RNA id: XM_039816390.1


Basic Information

Item Value
RNA id XM_039816390.1
length 1464
RNA type mRNA
GC content 0.53
exon number 17
gene id saga
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 4001441 ~ 4018262 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAAAGTTCACAGCCGGGTGACCTGATTGGCTGACAGAGGATGATGGGCTGTTTACATATAGAGCTCCTCTGACCGACGGCCGTCTCCCCCTCTCATCCAACAACACGTCTTCTTCCTCTGCTGCAACACAGGCGCTGCTCACTCGCTGCCCTCGAATCTGCACCAACATGACTCCAAAAAATGTTGTTTACAAGAAGATTTGCAAGGACAATTCGGTTGGCGTCTACATGGGGAGAAGAGATTTTGTCGACCGTGTTGACTCTGTGGATCCAGTGGATGGAGTCATCATCATTGATCCTGAGGCTCTGCAGCGGAGGAAagTGTTCGTCACCCTGTCCTGCACCTTCCGGTACGGCAGAGACGACATGGACGTGATGGGAATCGCCTTCCGCAGGGAGCTGTACCTGGCCACCCGCCAGGTGTACCCGCCTCTGCAGGACCTCGAGAAGGGAGTCCACACCAGGATGCAGGCCAAGCTGCTGCACAAGCTGGGCAACAACGCCTACCCATTCTTCTTTGAGTTTCCTGACAACCTGCCTTGCTCAGTGGCTCTCCAGCCAGGGCCCAATGATGTCGGCAAGCAATGTGCCGTGGAGTTTGAGATCAAAGCGTTCAGTGCTGAGAGCCAGGACGCTAAGGTACGCAAACGGAGCACAGTGAAGCTGTTGCTCAGGAAGGTCCAATACGCTCCAGACAGCGAGGGAGTGCAGCCCTCTGTTGATACCCCCAAGGACTTTGTCATGTCAGATAAACAGCTGCACCTCAAGGCCAGTCTGGACAAAGAGATTTACTACCACGGTGAGGTCATCAAAGTGAACGTCAGCGTCACAAACAACTCCAGCAAAAACATCAAGAACATCATTGTCTCTGTGGATCAGATCGCCAATGTGGTATTGTACTCCAACGACAGCTACGTCAAATCTGTGGCCATCGAGGAAACCGGGGATTCGGTGTCTCCCGGAGCGACTCTGCAGAAAGTCTACAAGCTGCTGCCTCTGCTGGCCAACAACACTGAGAGGAAGGGCATCGCTCTGGACGGCAAACTGAAGCATGAAGACACCAACCTGGCATCATCGAGCATtATCAAGGAAGGTGTTCTGAAGGAAGTTATGGGGATCATGGTTTCATACAGAGTCATGGTGAAGCTCATCGTCGGaggGATAATGGGATCAAGTGAGGTTGGCCTGGAAGTTCCCTTCAAACTGATGCATCCTAAACCTGATGCAGTGAAGGAGAACAGGGTGTGCACCaaggacgagagagagagagtgcacaTTCGCCGAAATGACGGCTTTTCGACGATACTAAAGGACAGCATCTCTTTAGCAATGAAGCGAGCTACACTGTCTtgaggaggaggacgagcTTGAGTTCCAGGAGTTCAAACGCTCCTACCTGAAGGGGATGGTCGATGACGAGGACGAAGATGGAAACGTGTCGGGCGGTGACGACATGGAGCCCAAA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150988 lncRNA downstream 32923 3967994 ~ 3969218 (-) True G111997
TU150892 lncRNA downstream 180951 3803176 ~ 3821190 (-) True LOC120568335
XR_005640700.1 lncRNA downstream 198635 3800195 ~ 3803506 (-) False LOC120568335
XR_005640699.1 lncRNA downstream 199646 3800195 ~ 3802495 (-) False LOC120568335
XR_005640708.1 lncRNA downstream 281019 3718266 ~ 3721122 (-) True LOC120568342
TU151003 lncRNA upstream 21622 4039884 ~ 4040197 (-) True G112007
XR_005640616.1 lncRNA upstream 56467 4074729 ~ 4082082 (-) False LOC120567799
XR_005640614.1 lncRNA upstream 61317 4079579 ~ 4082082 (-) False LOC120567799
XR_005640615.1 lncRNA upstream 61317 4079579 ~ 4082082 (-) True LOC120567799
TU151022 lncRNA upstream 72246 4090508 ~ 4138931 (-) True G112018
XM_039817021.1 mRNA downstream 18146 3972332 ~ 3983995 (-) False proca
XM_039817022.1 mRNA downstream 18286 3972332 ~ 3983855 (-) True proca
XM_039816101.1 mRNA downstream 112225 3883756 ~ 3889916 (-) True LOC120568530
XM_039815750.1 mRNA downstream 130326 3861329 ~ 3871815 (-) True LOC120568324
XM_039815746.1 mRNA downstream 242558 3752770 ~ 3759583 (-) False LOC120568321
XM_039814702.1 mRNA upstream 2905 4021167 ~ 4027586 (-) True cldn15la
XM_039815667.1 mRNA upstream 92484 4110746 ~ 4121351 (-) True si:ch73-170d6.2
XM_039815664.1 mRNA upstream 127601 4145863 ~ 4168656 (-) True slc39a6
XM_039815665.1 mRNA upstream 129501 4147763 ~ 4168316 (-) False slc39a6
XM_039814907.1 mRNA upstream 469066 4487328 ~ 4499789 (-) False LOC120567835
TU150514 other downstream 632202 3314646 ~ 3369939 (-) True LOC120568520
XR_005640646.1 other downstream 772994 3204287 ~ 3229147 (-) False LOC120568005
TU150424 other downstream 860271 2985332 ~ 3141870 (-) False LOC120568519
TU150430 other downstream 1010295 2985332 ~ 2991846 (-) False LOC120568519
TU150296 other downstream 1424127 2573304 ~ 2578014 (-) True G111573
TU150904 other upstream 17280 4035542 ~ 4036963 (-) True G111942
TU151047 other upstream 219840 4238102 ~ 4238670 (-) True G112043
TU151048 other upstream 219840 4238102 ~ 4238670 (-) False G112043
TU151050 other upstream 219840 4238102 ~ 4238670 (-) False G112043
TU151054 other upstream 219840 4238102 ~ 4238670 (-) False G112043

Expression Profile