RNA id: XM_039816394.1


Basic Information

Item Value
RNA id XM_039816394.1
length 1954
RNA type mRNA
GC content 0.44
exon number 11
gene id eif4a2
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 15409504 ~ 15414489 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTTTAAGTTAGTCAGTGAAAAAAGTGCGGCTGCATAAAGGCAGTGGGCATCGCCATCAGCGATCTTTCCAGTCGCATGTTGAAGTTAGGAACGGACCATGTCTAGCGATTCTGCTGATTTTAACAGCTCAAAAGACCATGGGGGGCCAGATGGAATGGAGCCTGATGGTGTTATCGAGAGTAACTGGAATGAGATTACGGACAACTTTGATGATATGAGCCTAAAGGAGACTCTTCTCAGGGGGATATATGCATATGGTTTTGAAAAGCCATCTGCCATTCAACAAAGGGCAATCATACCTTGCATCAAAGGCTATGATGTCATTGCCCAGGCCCAGTCGGGCACTGGCAAGACGGCCACGTTTGCCATCTCTATCTTGCAGCAACTGGACATAGAGGTGAAGGAGACTCAGGCTCTGGTGTTGGCTCCCACCAGAGAGCTGGCACAGCAGATCCAGAAGGTCATTCTGGCTCTGGGTGACTACATGGGGGCAGCATGCCATGCCTGCATCGGAGGGACCGATCTCCGTGCTGAAATAACAAAACTCCAGGCTGAGGCCCCTCACATAGTGGTGGGCACACCAGGACGTGTGTACGACATGCTTAGCAGGGGACATCTATCTGCAAAATGCATCAAGATGTTTGTTCTGGATGAAGCTGATGAGATGTTGAGTCGAGGGTTCAAAGATCAAATCTATGAGATCTTCCAAAAGCAGAGCACAAACATTCAAGTGGTCCTGCTCTCTGCCACCATGCCAGCAGAGGTGTTGGAGGTGACCAAGAAGTTCATGCGAGAACCCATTCGCATCTTGGTGAAGAAAGAAGAGCTTACCCTCGAGGGTATTAAGCAATTCTACATCAATGTGGAGCGAGAGGAGTGGAAGCTGGACACCCTGTGTGATCTGTATGAAACCCTGACTATCACCCAGGCTGTCATTTTCCTCAACACCAGGAGAAAAGTGGACTGGTTGACTGAGAAGATGCATGCTAGAGACTTCACCGTCTCTGCTCTGCATGGTGATATGGACCAGAAGGAGCGTGATGTGATTATGAGAGAGTTTAGGTCTGGCTCAAGCAGAGTGTTGATTACTACTGATCTTCTGGCTCGTGGGATCGACGTCCAGCAGGTTTCCCTGGTCATTAATTATGACCTTCCTACAAACAGAGAGAACTACATTCATAGAATTGGTCGTGGTGGCCGTTTTGGCAGAAAAGGAGTTGCTATCAACTTCGTCACTGAGGAAGACAAGAGGATTCTTCGGGATATTGAGACGTTTTACAATACTACCGTGGAGGAGATGCCCATGAATGTGGCAGACCTAATTTGAGCCctgagattattatttttttaaacgcgCAGTGATAGCGATCGTCCACTTGCATTGTGCTTATATTATtcgaagggggaaaaaaaaaaacttctcaaTGCTAAATCTTGGCTCTGAATTTTGGTATGTGTTAAAAGCGAGTTGATTTCTATGGTGGTCCCTCACGGACAGTTGTAGATTCTAACCTCGACAGGTGGCTGTTTGGCGCTACACAGCTATGGGGTCTGTAAACTTAAAGGTTCTTATCAGGTATTTTTTTCCATGTTCAATTAAGATGTGTGTATTCGATGTTCTCCATCATTTAGTAATTTACTTGTGGACTAAAAGGTATAAGTGCTGTATAAAGTCTGCAAATTATGTTATGCTAACATATGTGCAATGTATTGTGGGACTGCTTAATAGACACTTAATGTGTTACTGTAGGTTCACTTGCCTTTTTATCTTTtgtgaatgtttttaatttaatataccATATATTTTCTAATCCCACTTGCTCTATAAGAATTCCTGACATGTGATACCCTTACCAGAGTATATTGCTTcccttctcccctccccccactATCAGATTTTCTCTCCCCAGAATTGTATAAATGTCTTAATAAACTGATATTGCTCTAAGTACA

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K03257 EIF4A; translation initiation factor 4A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154969 lncRNA downstream 1877 15407377 ~ 15407627 (-) True G114883
XR_005640790.1 lncRNA downstream 16245 15387478 ~ 15393259 (-) True LOC120568803
TU154900 lncRNA downstream 143280 15264520 ~ 15266224 (-) True G114836
TU154790 lncRNA downstream 327524 15076141 ~ 15081980 (-) True G114752
TU154756 lncRNA downstream 406459 15001144 ~ 15003045 (-) True G114733
TU155136 lncRNA upstream 306530 15721019 ~ 15727229 (-) True G115017
TU155169 lncRNA upstream 320565 15735054 ~ 15735281 (-) True G115041
TU155170 lncRNA upstream 320991 15735480 ~ 15735895 (-) True G115042
TU155171 lncRNA upstream 322040 15736529 ~ 15736827 (-) True G115043
TU155176 lncRNA upstream 327335 15741824 ~ 15745228 (-) True G115048
XM_039816037.1 mRNA downstream 78540 15329264 ~ 15330964 (-) True LOC120568473
XM_039816035.1 mRNA downstream 81442 15311382 ~ 15328062 (-) False LOC120568471
XM_039816033.1 mRNA downstream 81442 15311382 ~ 15328062 (-) True LOC120568471
XM_039816036.1 mRNA downstream 81877 15311382 ~ 15327627 (-) False LOC120568471
XM_039816034.1 mRNA downstream 81877 15311382 ~ 15327627 (-) False LOC120568471
XM_039816567.1 mRNA upstream 2536 15417025 ~ 15418189 (-) True setd9
XM_039816775.1 mRNA upstream 29983 15444472 ~ 15451865 (-) True LOC120568994
XM_039816424.1 mRNA upstream 37950 15452439 ~ 15462599 (-) False LOC120568743
XM_039816423.1 mRNA upstream 37950 15452439 ~ 15462599 (-) True LOC120568743
XM_039816203.1 mRNA upstream 69701 15484190 ~ 15518928 (-) True LOC120568593
XR_005640598.1 other downstream 104894 15290186 ~ 15304610 (-) False mfsd8l2
XR_005640597.1 other downstream 104894 15290186 ~ 15304610 (-) False mfsd8l2
TU154687 other downstream 612460 14795918 ~ 14797044 (-) True G114680
TU154602 other downstream 793732 14613613 ~ 14615772 (-) False LOC120568687
TU153973 other downstream 2320941 13084561 ~ 13088563 (-) True G114152
TU155326 other upstream 729671 16144160 ~ 16148121 (-) True G115164
XR_005640638.1 other upstream 768165 16182654 ~ 16201698 (-) True cc2d1b
XR_005640639.1 other upstream 768165 16182654 ~ 16201257 (-) False cc2d1b
XR_005640637.1 other upstream 768165 16182654 ~ 16201257 (-) False cc2d1b
TU155443 other upstream 916464 16330953 ~ 16335932 (-) True LOC120568735

Expression Profile