RNA id: XM_039816399.1


Basic Information

Item Value
RNA id XM_039816399.1
length 4281
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC120568715
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 28498947 ~ 28590144 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGGAACAGGAGGGAGAGGTgggcagctctctctctctctctctctctctctgtctctctctctctgtctcagtcaGACTTGCCGGCTGCTGgtctcttcttcctcctgtcTGGTCGGGTTCTCTTCTTTGCCGGTGGCTGGCTGGAGGAGTTTAGCTGTCTCTTGGCTGGATTTGAACATGGACTGGACAGCTCCACGCAGCGAGACATGAGAAGAGTCACTGGAGCTACACTGTAAGCTGCTAGATCTGTCGTGTTGTCTACAAGGAGTGGCAGCAGCTCTGTCTTTCTGAAGACATTTGTGGCATGAAACCAGATCACATACGTCTTTCATTCATCACTTCCTCCTTAGTCTCCCTCCCCCACTCTCCAGTTAGAAACTCTCACCTCAGCTCCACCGCATTGATGAGGTAACGTCAAGCTCTACGTAACGCAGCACCCACCTGCACAAACACCACCTTCCCCTTGCTTCCCCTCCTTCTGTCAACCTTTCTACGCAGCCATGGGGCAGAAGATCTCTGGCGGCATCAAATCGGTCGACAGTCGCGGGGAAAGCGGCGGCTCCCCGTCCTACCGTCCTTTGGCGCACCGGCGGCAGCACCCAGAACTGAGGGGCCCAGATTTCTCCAAACCTCAAAGGCTGGATCTCCTATTGGACATGCCGTGTGCCGGACTGGAGACCCAGCTCCATCACGCGTGGAACCCCGACGACCGCTCGCTCAACATCTTTATCAAAGACGATGATAAACTGACATTTCACCGCCACCCGGTCGCTCAGAGCACGGACTGCATCCGGGGGCGGGTCGGATACACAAGGGGTCTCCACGTGTGGAAGATCCACTGGCCATCCCGGCAGCGTGGCACCCATGCCGTGGTTGGGGTGGCAACCTCCGACGCCGCTTTACATTCGGTTGGCTACACGGCGCTGGTGGGGTCGGACTGTGAGTCCTGGGGCTGGGATCTGGGACGCAACAGGCTCTACCACAACAGCAAGAACAGGGCTCACAGCACACTGCCCACGTACCCTTGTTTCCTGGAGCCGGAGGAGTCGTTCACACTGCCGGACTCTCTGCTAGTGATTCTGGACATGGACGAAGGGACGCTGAGCTTCATGGTGGATGGACAGTATCTAGGAGTCGCATTTAGAGGACTGAAGGGCAAGAAGCTGTATCCCGTCGTCAGCGCTGTGTGGGGACATTGTGAGATAGCCATGAAGTACATCAACGGCTTGGATCCGGAGCCTCTGCCTCTGATGGACCTGTGTCGGCGCGCAGCCCGCCTGGCGTTGGGTCGCGAGCGGCTTCAGGAGATTGAGGGCCTCCCTCTGCCCCAGTCCCTGAAAAATTACCTCCAATACCAGTGACTGACACCAGCAGAGCCAACTGGGAGTACAAGGACACAAACCAGACCACCAGAAAGTCTAAAGGATGAATAAAAGAGATGAGAGATGATACATGGGAAGCATGTCCACACTGAGAGCACCATAGCTCTACAAAAAAAGATGGATTTATGAAAGGATGGAGAGAAAGCTGATGGATGAACTGACGGAGGAGGTCCAGGCTTTCAAACAAAGACGGCACCAGCTTCTTCTTGGATTTCGAGctgctttttttaatttgttcttgacttgaaataaattattgatGATGGTATCCCATCAGCGCCTCACTCGTCCAGAAAGAAAAACCCATCCGGTGTGGTTAGTGTTCAGATGACCACCGCCTCCTACTGATGAGAATGAAAACTGCGCCGAGAAAGCACACTAATCCTATCCCTGGAGGCCTTTCTGACATACAGTCAGTGACCATATTATTGCTTGTTGGATACCATAGTGTGTATTCATGGTCTCCACTGGCACAGGTGAAAGGCTGCAGAGTCCAGATGTCCAAGAGCATTTTagcactgttgttgttttttatctgATTGACTTGGGGCCCGACCAAAAGCTCACATTGCATACAgagtagataaaaaaaaaaaaaaatggctgcaAGGTATATGCAAACGTTTAGTCATGAGAAAAAAGCATGCCAAATTTATCTCCTGGCTTTATGCAGACAATTGATGAGAGTTGAGCCTTTTTCAGACATGGAGTAAGTAACGTCCGTCAGTTAAAGTGATGGCTTTTTGTCGTTTAGAAGTGTTTAAGTACAAAAATGTTGTTATAGATTAATTCACAATGCTCGTACAGTATTTAGCGCCTGGTGCACGAGAAGAGCTGCTGAAAAGTAATGATGTGAAGGAAGAAAGCGCATCAGTGATGGATTTGAAAAATTTATTTTGCTATTTAAGTCTAAATCAATGACCATTGTCAGCATTACAGAAGCTAAACACTAGTTTCCACTCATGGATTTAATCATTTATTAGTTGGttttataacatttattttattttgctgcGTATTTCATAATAATGGCCAAGTACAGAATAACAAGACGTTATATTGGGACTCTTGTTTGCTAATATGCTGTATGTGAAGCATTTTTATATACAGGTTATTCTATCCATGCAGTTAGCCTGAATGTAACTCTGatgatttttttcatgtttttttaacctcTTTTGCCCCTTGCTGCATGGGTAAATGAAAAAAGCCTTATAATCTGATTTGACAGGACAACAATCTCCTCCACAACTTGAAATTGGCAAACTGACTTATTTTCTTTGTGCATAAAAATGATAATTAAGTGGTACATTTGTTACAGTGCCCCTAAAGCTCCTGAAAACAAGGCCTCAAATAGGAATTATTTCTCTGTAACATTAAATATTCATAACTTAATAAGCACCAAtcaaagttggaaaaaaataacttaaaaactCATCTAATCTGCTTCATCaggactgtgtttgtgtggtatGATTTGATTGACAATACCCCAAACAATCCATCAAATGCCGTCAGATTtgaattcatatatatatagtcgAATCATGATTGGTGGATGCAATTACCTTTTTCTAAATGAGCCCCGCCCACTTTAAGAGTCAGAAGAGCAAACAACCAGAACATTTCTAACTCCTAACAGACAACTGTGTTCTTGTAGGACCCCATTGATCATAAGATGAAtgagaaaatacatttttagggACTTTTTAATAAGGGAACAAGACATGCATTTAATCCTCTTATGTGCATAAATTGTGTTACTATGGCCTTTATGACAATGTGATGATATCCAATTAAAACTTGCGCGGTGTGGGAAGCGACCTATTAGGATTGCCGTCATGACTTTTACGTAACGAGCTGCGTGTCTGAAAGGGGTTTCATCACAGATATAGACAGGACAAAACTGCTTGCTGTTTAAAGTGTTAAGTGGCACTGAGAAGCATTCCTCACCGGACACTAAATCATGTGTTATGATGTCAATCAGGACCAAAGTATTCATACTAAGCCAtggagtgtgtgaatgtgtctgtATGAGCTGTAGGTCGCAGCCCGTCGCAGTGTAACTAGTGCTAACATGCTGCTGGCTGTAAGAAGAGCCTCGCCTGCTGTTGTAGCACCCTGCTGTAGCTCACAGGTACCAGACAGCTGTATCTGTCTGCTGTCCGCACAACTGTCTTAatgaccacaaacaaactggaccAGAGCAGATCTAGTCTCACTGGATCTATAATAAAGGCTGGAACAGAATGTAGGAACATTACTGCGACTGCAGTGGCAGATTCTGGCTTAGAATAGGATGCAGATGgccaatacatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactgtagaccAATCATGTTTTCTTTCCTAAAAAAAAGCTTGAGTCACTTTTTTAACGTCTGAGTTTGTATtctacatataataataataattgttattattattattattgttattattattattattattattattgtgagtGTGGAGTCTGATGATGGCAGGATGatgatgctgatgatgatgattattaatATTACCTGTCACAAGCTAGtcctatgtttgtttttttaactgatgATTGATGGTTACATTCAGGTAAATTTAATACAAAGATGCTGGTgatgaagggagagagaaatCAAGTTGTTTCTTCAATGctgcttttattattattattattattattattattattattattattatttgtgatGATAGTGGTCTCACCTCCTGTTTTCATCAGTTAGGATGGGGAGAAAAGGACCATTCCTAAAAGTAGTAGAATGTATGGACAGACGGCGCAGTTGAGATGTCAACAGATATGAAATGTGAATAAAAGCcaagtgaatttaa

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG:

id description
K10343 SPSB1_4, SSB1, SSB4; SPRY domain-containing SOCS box protein 1/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159959 lncRNA downstream 17050 28481639 ~ 28481897 (-) True G118671
TU159956 lncRNA downstream 25327 28470967 ~ 28473620 (-) True G118668
TU159916 lncRNA downstream 292706 28205711 ~ 28206241 (-) True G118636
TU159912 lncRNA downstream 298396 28200137 ~ 28200551 (-) True G118632
TU159884 lncRNA downstream 350690 28146370 ~ 28148257 (-) False metap1d
TU159970 lncRNA upstream 106301 28656661 ~ 28657022 (-) True G118678
XR_005640662.1 lncRNA upstream 147734 28698094 ~ 28699197 (-) True LOC120568122
TU159990 lncRNA upstream 192600 28742960 ~ 28743235 (-) True G118698
TU159992 lncRNA upstream 205227 28755587 ~ 28755883 (-) True G118700
XR_005640660.1 lncRNA upstream 245718 28796078 ~ 28802749 (-) True LOC120568120
XM_039814645.1 mRNA downstream 228291 28250633 ~ 28270656 (-) True LOC120567676
XM_039815058.1 mRNA downstream 239044 28255245 ~ 28259903 (-) True rbp1.1
XM_039815289.1 mRNA downstream 249860 28239490 ~ 28249087 (-) True copb2
XM_039815290.1 mRNA downstream 260430 28221880 ~ 28238517 (-) True LOC120568087
XM_039815287.1 mRNA downstream 282324 28206718 ~ 28216623 (-) False LOC120568085
XM_039815566.1 mRNA upstream 42978 28593338 ~ 28613393 (-) True LOC120568207
XM_039814646.1 mRNA upstream 86692 28637052 ~ 28647533 (-) True LOC120567677
XM_039814984.1 mRNA upstream 109472 28659832 ~ 28661149 (-) True LOC120567913
XM_039815383.1 mRNA upstream 324515 28874875 ~ 28876602 (-) True LOC120568118
XM_039816556.1 mRNA upstream 550650 29101010 ~ 29103793 (-) True LOC120568834
TU159738 other downstream 780188 27717551 ~ 27718759 (-) True G118524
TU159739 other downstream 784557 27713467 ~ 27714390 (-) False G118524
TU159721 other downstream 823587 27670976 ~ 27675360 (-) False LOC120568986
XR_005640672.1 other downstream 1674377 26819838 ~ 26824570 (-) False cirbpa
TU159298 other downstream 1832995 26661621 ~ 26665952 (-) True G118175
TU160079 other upstream 435731 28986091 ~ 28986319 (-) True G118764
TU160179 other upstream 870019 29420379 ~ 29420652 (-) True G118856
TU160248 other upstream 1094003 29644363 ~ 29649792 (-) False LOC120567741
TU160542 other upstream 2313886 30864246 ~ 30865494 (-) False LOC120568929
TU160545 other upstream 2313886 30864246 ~ 30876080 (-) True LOC120568929

Expression Profile