RNA id: XM_039816401.1


Basic Information

Item Value
RNA id XM_039816401.1
length 2442
RNA type mRNA
GC content 0.54
exon number 10
gene id amotl2b
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 24240706 ~ 24247620 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCTCCACAGTCATTTCACAGCGAGAGAGGACCGCGGCAGCCCGTCCGGGGGAGGAACATGAGACACGTTTGACTCGGAAAAAAAACTCATGGAAATAGTGGAATTACTCTGAATGTTTTTACTTCGAGATCAAGAATAGCATTTCGTTATGATGAGAGCGTGAGCTGGTCCAcagctgatttatttaaatattttcaaaataagagctcAACAGGTCTTTTGAGAAGATAACAACGTATACAAAGCATTATGTCGTCCACTGAAGAGCCGTCTGGCACGGTCCTGCACCGGCTCATCCAGGAGCAGCTGCGCTATGGAAACCCCACAGACACCCGCACCTTATTAGCCATCCAGCAGCAGGCCCTGCGTGGAGGCAGTGGAAGCAACAGTGGACCCAGCAGTGGAGGCGACATGGGCAGGAGCCCACGATCCTCTCTGGAGAGTCTCACCCAGGAGGACCCTCCGTTCCCTCAGCTCTCTGCAAGGCAGGAGCCCCAGGGCCAGGAGCACCAGGGTGACTACCACCACTCAGAGAGTGGCTACCAAGTCTACCAGCTACATGGGGAGGAGCTGCCAACTTATGAGCAGGCCAAGGTGCACTCTCAGTATCTGGCCTCTCACATGCTCCTGCATGAGGGGGCCTTCCACGAAGAGGCAGATTTGATGGACCTGAAGTGCAGCCATGTGCGGTCACTCAGTGAGCATTGCATGCAGATATCTCTGGAGAGGAATGATGCAGCTGCTAAAGCAGAGGCCATCAAGAGCACATCTCACAGCTATCCTGAACTTCCATACTACGCACCGCAAGTCCTCCAGAGCACGAGGCAGACTCTGGACAAGCGCAGCCCACCTCCAGAGTACTCAGCCCCCATCCAGGGCCAAGGATTTATCCCTCATCAGATCCAGGAGCCGGTGCAGGCACAGCAGCACAGGTATGTCCAGTCGGCTGAAGTCCCCTGCTACAGCACATTCACCACCCTGCCTTCTGTTGGCTTGGAGGAACCTAACCAGGTGGAGCTGCTGCTGATGGAGAATGAGAGGCTGAGGCAAGAGCTGGAAGCACACAGGGAGAAGACTGGCCGTATTCAGAAGTTGGAGCAGGAGATCCAGCGCATTTCGGAGGCATATGAGACACTGATGCAGGGCAGCTCTAAGAGGGAAAATCTGGAGCAGACACTGAGGAAGAGGCTAGTGGCTGAGATCAGgaggctgcaggattttaacaGAGACCTTAGAGAAAATTTGGAAAATGCCAGAACGCATGTTGCAAAAGAAGTAGAAGCAGCCGACCATAACCAGCACATCATGGCCAAACTCCTTGAACAAAATGAGGAGCAGAACTTTGAGCGGGAGCGCGTGGAGCGGGAGCTGGAGCGATTGCGTTCCACGGCGGAGGAGCAGAGCCAGAGGGCAAAGCGACTCGAGGAGGCCCTGGATGCAGCTCGTGGACGAGGTCGCCAGCTTGAGGAGGAgttgaggaggaagagggcTTATGTGGAGAAGGTGGAGAGACTTCAGAGTGCGCTGGCTCAGCTACAGTCCACCTGTGAGAAGAGGGAGAGCCTGGAGATGAAGCTGAGGACACGACTAGAGCAGGAGCTGAGGAGTTTGAGGGCCCAACAGAGGCAGTCACAGCCACCAGGAGTGACCATGAGCTCCCTCCAAGAGCGTCTGCATGAGCGCGAGGAGCGAATCCTGGCCCTCGAGGCCGACATGGTGCGCTGGGAGCAGAAGTACCTGGAAGAGAGCACCATGAGACAGTTTGCAATGGAGGTGGCTGCCACTGCCGCTGCCCAGAGAGACACCACCATCATTAACCACTCGCCTTGCCACTCCTCTAACAACAGTTTCAACGACGACCTGCCAGTTGCCGACTACAGGAATCAGGAGATGGAGAACAGGATCCGTGCTCTTTACGCTCAGATTTTGGAAAAGGACGCTGTGATCAAGATCCTCAACCAGCGGCTGCATCAGGACCAAGGACGGAAGGACGAACAAAGTCCCCGCACAAACCTCCTGAATACAGCGGGGGCACCTCTCCGGCCCGCCTCCTCCACCCCATCCATCAGCACCACCATGAGCAACACAAGGAGTAGAGGTAAGAGTCTTTCAGATGATCAGACTTTACCAAGCCATCAGTTCTCTTCTCAGTCTCAACCTGGAACGCTAGAACGGCAGGTGGAGGGAACAAAAGCCAAAGAGGCTGCCAGCAAAACTAAGCTCAACAGTGacaaGGCGCCTAAGAAGTTGCTATTAAACCCCTTCAGGGGCTTGGATGAGCTGGAGTCAGAGGCAGTGGAAATCTTCATTTAAAGAACAGAGAGGTTGATTTTGAATGGGGTGGGGGGCAATTCTGGGAATCTGTGAAGAGTGCAAGTCTTTGAATAGAGAGTGGATTAAATATTGGATGCAAGAATGTCGTGGAAAGAGGCCAacgcaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158350 lncRNA upstream 70753 24169668 ~ 24169953 (+) True G117488
TU158349 lncRNA upstream 71151 24164854 ~ 24169555 (+) True G117487
TU158338 lncRNA upstream 89935 24150458 ~ 24150771 (+) True G117476
TU158223 lncRNA upstream 165391 24073887 ~ 24075315 (+) True G117389
TU158250 lncRNA upstream 196222 24043969 ~ 24044484 (+) True G117406
TU158403 lncRNA downstream 9934 24257554 ~ 24258831 (+) True G117523
XR_005640665.1 lncRNA downstream 90073 24337693 ~ 24339256 (+) True LOC120568139
TU158431 lncRNA downstream 308799 24556419 ~ 24556657 (+) True G117547
TU158430 lncRNA downstream 321958 24569578 ~ 24576002 (+) False LOC120568789
TU158539 lncRNA downstream 590336 24837956 ~ 24838229 (+) True G117632
XM_039817014.1 mRNA upstream 17108 24220237 ~ 24223598 (+) True aire
XM_039817016.1 mRNA upstream 17108 24220237 ~ 24223598 (+) False aire
XM_039817019.1 mRNA upstream 17108 24220237 ~ 24223598 (+) False aire
XM_039817020.1 mRNA upstream 17108 24220237 ~ 24223598 (+) False aire
XM_039817015.1 mRNA upstream 17108 24220237 ~ 24223598 (+) False aire
XM_039815560.1 mRNA downstream 5768 24253388 ~ 24257335 (+) True LOC120568200
XM_039815561.1 mRNA downstream 11843 24259463 ~ 24267286 (+) True LOC120568201
XM_039815562.1 mRNA downstream 22064 24269684 ~ 24278078 (+) True LOC120568202
XM_039815425.1 mRNA downstream 126669 24374289 ~ 24545760 (+) True tnr
XM_039815423.1 mRNA downstream 129272 24376892 ~ 24545760 (+) False tnr
XR_005640839.1 other upstream 186002 24049764 ~ 24054704 (+) False LOC120569114
XR_005640838.1 other upstream 186002 24049764 ~ 24054704 (+) False LOC120569114
TU158239 other upstream 217047 24022441 ~ 24023659 (+) True G117400
TU158169 other upstream 326208 23912664 ~ 23914498 (+) True hes6
TU158168 other upstream 332305 23905870 ~ 23908401 (+) True G117353
TU158470 other downstream 420273 24667893 ~ 24675753 (+) False LOC120569045
TU158471 other downstream 426304 24673924 ~ 24675753 (+) False LOC120569045
TU158583 other downstream 702948 24950568 ~ 24954247 (+) True G117664
TU158802 other downstream 1507473 25755093 ~ 25755890 (+) False LOC120568894
TU158814 other downstream 1528271 25775891 ~ 25793954 (+) False LOC120568895

Expression Profile