RNA id: XM_039816413.1


Basic Information

Item Value
RNA id XM_039816413.1
length 4601
RNA type mRNA
GC content 0.51
exon number 11
gene id LOC120568730
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 30101634 ~ 30218722 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCAGCAGAGGCAGAGCAGAGTGAGTGCTGAAACGTTACTGACCGGAGGTGCTCTCCTCTGAACGTCGGTCTCATTTTCACGATGAGTTTTAATGTCAGCACACAGGGCGAACAGCTTTGGGGAAGACAGTGCCAGTCATGCGCTGGCACCATTTTTTGAACCCCCAAACACCGCATTTTAGGGGCGACCACGGACAAATCCCATTTACAGGCATCACCTCGCCAGGCGATGGAGGTCCTCCGTTAAGGGCTTGGTGGGGGAACCAAACTCTGTCGGAATTTCGCCAAAATTACGACGGGAATTAAGTACAGCTCCCTGTCTCCCGGCAACGGGAGAGACCACCTGCCGGTCGTGATGTCTCGTGCGAAGGAGCGGCTGAAAGGCGGGAATGAGACCAAGGACAGCGTCACTCTGCTGCCGTGCTTTTACTTTGTAGAGCTCCCTATCCTGGCCTCCTCTGTTGTCAGCCTTTATTTCCTGGAGCTAACGGATATTTTCCAGCCAGTGCATTCTGGGTACAGTTGTAATGACCGCAGTCTGTCTCTGCCCTACATCCTGCCCAGACAGGAAGTCTGCCCACTGCCTCTGCTCTTCAGCTTGGCCTTCGCCGCTCCCACTGCCACGaTTCTTATAGGAGAAGCCATTCTGTACTGCTATCTCTCCAGGAGGTCATCAGCCACGCAGACTGAGGCCAACATCAACGCTGCAGGCTGTAATTTCAACTCCTACATCCGCAGGGCCGTCCGCTTCATAGGTGTGCATAtctttggcctgtgtgtgacaGCACTGATAACTGATATTCTCCAACTGTCCACTGGTCAACACACACCCTACTGGTTGGATGTGTGTAAACCCAACTTGACCCACATTAACATGTCCACTTGCGATGAAGCTTTTATTCTGGAGGACATCTGCTCTGGACAAGACACTGGGCTCATCAATGCTGGGAGGAAGTCGTTTCCCTCCCAGCATGCAACTCTGGCTGCCTTTGCTGCTGTCTACATCTCAATGTACTTCAACACGGTGCTGACAGACTCTGCCAAGCTGCTGAAGCCTCTCCTGGTGTTCTCCTTCGTCATGCTGGCCATCCTGGCCGGGCTGACCCGGATCATCCAGTTCAGAAACCATCCTGTCGATGTCTACTGTGGATGGTTACTGGGAGCTGCCATTGCCTTTTATCTGgGTGTGTATGCAGTGGGGAACTTCCAGCCCAGTGAGGATCGGTCCAGAATTCGAGCACCCACCCCCACCCTGAGAgagccccccctctcctccttacCCAatgtcagccaatcagcaatTAGCAACAGCCACCAAGGTCACCACACTCTGGCTCCCAGCCAACCAGAGCCCATCATCACCAGGACCTCTTCCCACACTTTGTCCCCCAACCGACCACAGCCCATGCTGACGCGAAGTGCCTCCTACCGAGAGCCGTCTATGTCCAATTTGAAAAGAGCCAGTGCTGAGGTGGAGGTGATAACCCCATCCAGTCCCCTGGGCAACCATGACAACATGATGACCTtcagcagcagcacactgcCAAGGTCCCACGGAGGCTCCTCATTGGAGGAGGGTCGCATTCCACGCCGTCACGCCTCCATCCATGCATCAATGGACTCAACCCGATCCAAACAGCTGCTCAGCCAGTGGAAGAATAAAAACGACAATAGGAAACTGTCCCTGCAGGTGATGGATGGAATAAGACcagcctcctcctcatctcctcaGAGGAACATGGAGCTGCGCTGCTCCTCTGAACCTTCTGCCATGGGCCTGGAGGCAGAGCTCCGAGGTGGAATACACCTGCCTTCACTTATCGCTTGTCAGGAAACAGAGCTGCGTGCTGGGGCTCACATTCCCGTTCAATACATGAAACTAGCAGCAAGCTCTGTTCCTATGGCCAATCATAATCACCAGACCCATAATGGCAGCAGCGGAATGGCTGGTGGGGCCAGAGTGTCTATCCAATCCCGGCCTGGATCCTCCCAGCTGGTTCACATTCCTGAGGAGGAAAACCTTACCAGCAGGGATCAGGAGAGTGAATCAGAGGACAGCATTATGGATGGAGGTGGGTCAGTGAGGGAAAAGTGGCTGAGAGTGACTGAGAAGACCACCATCCCCTGCAGGCCGCTCAGTGCTGGAGGACAGCCTCGTCTTATGCAGGTGATAGCCTTATCCAAACAGCAGGGTCTGCTACACTCTCCTCGGTCGGAGGATGGTGGATCCATTCGGTACCGAGCCTTGACAGACCAGGACCCATCACCACCAGCCTCTACCACAGGAGCAGTGGGAGGAGGAGGAGGTTTGGAAAGAAGTGGCAGCATAGTCCGTGTTGAAGCCCACCCAGAGTCCAGATCAAACAAACCTGTGGTGAAACCTCCAAGCACCGACGGAAGTGGCTCCTGGCGATGGAAACCACCAGAACAACGAGCCTCGCTCCGGCAGTCAGCTTTCACCCTCAACGATCTGAACAGACACACTGACAGCTGTGATTCACTGAGGGATGGAGGGTCAGTGGATGGGCGGAGGAGCGTGGCAGGAACTGAAAGTGAGAGTGAAGcgggaggagatggaggaggagacggagggggaggaggagacggAGGGGGCGTGGGAGGAGGGGTATACACAAACCATCCACATGTTGTACACCCTTTACATCCTTTACATCCCAATAACCCCAACAACTTCCAGCACCCCAATTTTAACCCCAACAATCCCAACTATAATAACATTCACTTTAACTTCAACCCCAACTCTGCCAATTTCAACCCCAACTCTGCCAACTTTAACCCCAACTCTACCAACTTCAACCCCAACTCTGCCAACTTCAACCCCAACTCTGCCAACTTCAACCCCAACTCTGCAAACTTCAACCCCAACTCTACCAACCCACACATGCCATTCACCCCCACTGTCACCTTTGCTCCTCCCTTCCACCCCCACCCGCAGGCCATCACCACCATCAGGGTCACCCCGGTGGAGGGGACGGCTGCcagcagcgacggtggctcagACTGCCAGTCGGTTACCTCGTCCAGCCGTGAGTCCACCCTGAGGAGGAAGAGTGGCTCCCACATCGGCCATGTCCCAGATCGAGGGCCCACCCCAGATCTCCACAACAACCACCGCCTCTGTGATGACAGTAACCGCCTCGACAACGAAAGCAGCAACCGTTTCCACGAAAACCTTCGAAGTTTTCAAGAAAACCCCATCCACCTTAACCATCCAAGCAGGCAGATGCAGGGGATGTTTGTTCGTCCTAGCCCAACGCCTCCCCCTACCTTACCCCGCCCCATCCTGACTCACACTCCGCCTCCTACTCTGGGGTTGGCCTATAAAGAATGACATGCTCAGTGTAAAATAATCCATCTATACCTGTGATTAAATGTCCTACTTGACCAGGACAAAATGTCAATGGAGATGCTGCATGGGCCATTCCGAACTTCAGTTCGGACCAAATATTAAAGGAAATTTGGTTAAATCTGTCCACAAAAAAGTGCTAGTCCCATCCACAACCTTTTACCTGTCCAATTAGGGCACAATATATAGCCAATTAtgtccccctcccctcctccccccaacAACCCAGCTGGTTTAGTATCcaactaaataaatgttatgTCTTACTAGGAGACATACTGtaagctttttttaaaacaattagCAAGAGGTTCACAATCCTTTTTCGGTCAAAAGCTATAGAGAGTATTAACACAATTAGCCATGCCTACAAGCTCCAACTGGCCAATAAGAAATTACTATAGTGAGGGCCCACGTTTAGAGTAGTGAGTTTGATTCAACATTTttccttgtgttttttctgGATACACAGTTTTTCGTAAATGTAATGCTTGAGTGAATTTGCTTCATAGGCACAAGGATAATGAGCTTAATAAACTGCTGACCATTTGACTCACTCAGAAGGAGCGACTCCATCCTCCTTGCTTTGTCCCATACCTCCCTGCCAGCAAGGCTGGATTCAGCCTAATGACTCTGCCCCCCTATCCTCTGACTGCTAGATCAGCTGTCCATGGGATAACAATCTTTCCACAacatgtatacatacagtatattgtcagCTCTAATGCTTCTGTCAAACACAGGTaacaatatcaatatatatataacttaacTATGTAACCACATGCCATTAGATGGACGTTTGCATTCAAAGTCCATAACTGTGCTGTGTTTGTATATAGGAATGTGAGTGGCCACAGTGGAAATTAAACCCACAGTCTTTATTGCGTCTGGGCTACACACTGGGCAATAACAGTATCTCTTAGGTCATGGTggtattgtgtttgtgttggataAGAACAATATCATGGGACTTTGTGTTTAAATATAGTGCTCTATTTTTTACCTGTTGTGTTTTAATTATGTGCAGTATATGAATATGATTCTGACTGTGTAGTTGCTGTACTGTACACTGGCACATACAGCATTTGAGCCATCTGAACAAACTTAGACCATACACAAGTCCAAAGACTGAAGGAAGtcaagttttttcttttctttgtttggtttattttatCAGCTTATCATGTCTCCcagtattaaagtgatggtttggagtaattcaccctagggtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160307 lncRNA upstream 23424 30077818 ~ 30078210 (+) True G118965
TU160306 lncRNA upstream 23922 30077399 ~ 30077712 (+) True G118964
TU160293 lncRNA upstream 134017 29967378 ~ 29967617 (+) True G118951
TU160286 lncRNA upstream 187976 29913450 ~ 29913658 (+) True G118944
TU160285 lncRNA upstream 193155 29907833 ~ 29908479 (+) True G118943
TU160338 lncRNA downstream 44537 30263259 ~ 30263559 (+) True G118994
TU160393 lncRNA downstream 233405 30452127 ~ 30453137 (+) True G119030
TU160395 lncRNA downstream 234005 30452727 ~ 30462896 (+) False G119030
TU160442 lncRNA downstream 463359 30682081 ~ 30682321 (+) True G119064
TU160444 lncRNA downstream 474266 30692988 ~ 30693284 (+) True G119066
XM_039817025.1 mRNA upstream 44525 30055815 ~ 30057109 (+) True LOC120569133
XM_039816946.1 mRNA upstream 55444 30044894 ~ 30046190 (+) True LOC120569089
XM_039816652.1 mRNA upstream 68100 30031910 ~ 30033534 (+) True LOC120568908
XM_039814657.1 mRNA upstream 131721 29963415 ~ 29969913 (+) True LOC120567689
XM_039814656.1 mRNA upstream 358042 29735520 ~ 29743592 (+) True LOC120567688
XM_039816208.1 mRNA downstream 350373 30569095 ~ 30677352 (+) True LOC120568595
XM_039816206.1 mRNA downstream 350373 30569095 ~ 30643638 (+) False LOC120568595
XM_039816207.1 mRNA downstream 350623 30569345 ~ 30643638 (+) False LOC120568595
XM_039814660.1 mRNA downstream 789000 31007722 ~ 31011324 (+) True LOC120567691
XM_039816757.1 mRNA downstream 1213084 31431806 ~ 31453460 (+) True LOC120568980
TU160295 other upstream 131784 29968413 ~ 29969850 (+) False LOC120567689
TU159791 other upstream 1942045 28156973 ~ 28159589 (+) False LOC120568082
TU159680 other upstream 2491916 27602024 ~ 27609718 (+) False LOC120568838
TU159378 other upstream 3215604 26883559 ~ 26886030 (+) True G118234
TU159241 other upstream 3331723 26765492 ~ 26769911 (+) True G118149
TU160411 other downstream 350673 30569395 ~ 30574881 (+) False LOC120568595
TU160502 other downstream 952495 31171217 ~ 31196233 (+) True G119114
TU160516 other downstream 980238 31198960 ~ 31200014 (+) False G119123
TU160672 other downstream 1241142 31459864 ~ 31460908 (+) True G119257
TU160764 other downstream 1647033 31865755 ~ 31868793 (+) True dnaaf6

Expression Profile