RNA id: XM_039816423.1


Basic Information

Item Value
RNA id XM_039816423.1
length 4709
RNA type mRNA
GC content 0.44
exon number 11
gene id LOC120568743
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 15452439 ~ 15462599 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACCAACCCACCTGCCTTAAATGGCAGTGGCGATCAGCAGCTCGCTGTTGTCGTTCCTCTTTGACTATTTGCCTGTGACAGCTGGTTAGAAGCAGTCTGACAGCATAACATGAATACACGGGGAAGTGAAAGCGCATGCATTTAATTCTAGTCGTTGGGTGCTCGGCGTTTTTTTTGTCAGCAAACCATTTATCGGTTGCTCTTTTTCAGCCGTCCTCCTCCGctacgttaacgttaacgttagcttagcttggCTTGCTAGCAGTCAGCGAAGGTATGGCATGCGTATAAATGGAAGAGCTCTTCCTCGTTGGGTTTACCATAAGGAGCAGTTCTGTTTTAAGTAGCTGACTTGGATGATAAATCCTCAGAGACTTCCCGTAAAAGCCTCACAAACTGCTATGGAGCCACACGCGGCTATAGGGTGTGTGAACATTTGCAGTCTGACCAGCACCTTACCGGTGATCCCCTACCAGAAGCTGACAGACCTGTACTACCTGAGCAGAGGGGGCTTCGGCACCGTGTTCAAAGCGCAGCACTCCGACTGGAGGACCACCGTGGCCATCAAGTGTCTGAAACTCGATTGTCCTGTTGGAGAAAGAGAGAGGAACTGCCTGCTGAAGGAGGCCGAGGTGCTCCACAAAGCCAGGTTCAACTACATCATCCAGATCTTCGGCATCTGCAACGAGCCAGAGTTTTTCTGTATTGTCACCGAGTTCATGAGCAATGGCTCTCTGGACCTGTTGCTCCACGAGAAGGACATGTACCCCAGGCTTGCCTGGCCTTTGCGACTGAGGATCCTGTATGAGATTGCCCTTGGGGTTAACTTTCTTCACAACATGAACCCACCCCTCTTACATCACGACCTAAAGACACAGAACATACTGTTGGATGGTGAATTTCATGTTAAGATCGCTGACTTTGGCCTTTCAAAGTGGCGACAGCTGTCTGTCAGTAAAGGCTCGGGGTCCAAGCCCACAGAGATGGGGGGCACAGTGATCTACATGCCCCCTGAGAGGTACGAACCTTCCAAGAGCCGTCGGGCAGATGTGAAACACGACATGTACAGCTATGCCATCATTATGTGGGAAGTGCTGTCCAGGCAGATTCCATTTGAAGAGGTGACCAACCCAATGCAGATCATGTTCAGTGTGCTACGTGGGTTGCGTCCTGACACAAGTCTGGGCAGTCTGCCTGCTGACATCCCCAGTAGAGAAACCCTCATCAGTTTAATGACCTGCGGTTGGAGCGCTAACCCCGATGAACGACCTTCCTTCCTCAAGTGTTTGATTGAGCTGGAGCCCATGGTGAGGAATTTTGACGAAATCGACTTACTGGAGGCCGTGTTGGAGATCAAGAAGTCAAAGTTGAAGCAAGGATCGGCCTGTTGTTCAGCCCAGTCAGTGAGTGAGAAGAGAAGCGAGGAAGGATCCCTGAACATGCTGAAGGACAGGCTCAGCCCCTGGCCGGAGAGCTCCACTTCAGGCTCAGGCTCTTGTTCCTCCCAGGACACAGACATATCTCTACCAGGCGCCCTCACCAGCAGCAATGCTGCACCTTCTAAAGAGGGACATCTGTCGTCATATTTGGCTCATACTCTAGAGCGTCCTGAGTCTTTGATAGACAACTGCACAGTCAACAATCTGAATGGCTACCAGAGTGCCAGGCCCCTTAACTATTTGAATATACCCATCAAACCAGGCCTGCCTGTCACTGAATATGAGACACAGCTGGATAACCTCACCCTCAAGCCTCAGCAACAAGCAGATAACTCTCCTCTGTTGCGGCATTCCCCTCCCTCACAAGGCCCAATTGCCCAGTGGATCGCAACACGGCGTGAGGATATTGTCTCCCAGATGACAGAGGCTTGTCTGAACCAAAGCTTGGATGCCCTGCTGGCCCAAACCATGCTTATGCGGGAGGATTACGAGCTGGTGAAGACCCAGCCGACGCGCACCGCTAAGGTCCGCCAGCTCCTGGACAACTGTCACCGACACAACGAAGACTTCTGCCGCATTGTTGTCCGCAAGCTGTGTGACAACAAGCAAATGGGCCTGCAGCCGTTCCCATCTGAAATCGGCTCCCCTACTCTCGTCCCCAATGCGCCGCCGCTGTCCATGTCCTGCAATATCCCCAGGAACAAGTAGCAGCAGTCACAGCCAATCCATGAAAACAATCCAGATTATTAACTGTGCCAACTTTACACTACAACTCCTACCTGTTCTTTTTGTCGTCAAGATGGTCACTGTGGTTTCTGTCTTTCCCTCAAAGAGAAGGAGGAACTGAGGGCTGCGTGAGCAAAAAGAGTCACAGGTACAAAACTAAGCTTTTGGCTTTGAAGAATATCCACTCACGAGAGACAAAAGGTTTTATTCTGTATAATCAGAATCAAAAGTTTGAAggaatcaatgattttatttaacaatgtcctggatttattgatttatttattctgaGTGGATGTATCGCAGAGTTTCTCTCCTTTGTCTcagttacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatgcaaaCATCCCCGATACACTCAGTTGATCTGAGTAAGTGATATAAGGACTGTTAACAAGCTGGAAAACCTACAGCAAAAATAAGGTTAATTCCCATTAAAGCAGTCTTGGTCAAATGTTGGTTTACCGCCTGAGAAAGTGAGCGAGCATGTGGCCCTCACAGTGTCTTTGTATTGAAGCGAAGTATGTGGTCTTGTAGTGTTGGAAAGAGTTGTGATTTTGATAGAGTGTGACCGCATGGGAAGTTTTTGTCCCTGCCCCGGgctctttttcctcctcctccttttctttttactgCTGAACTAAAGAAAGTCGCTGGGACATTGAGTAAAGAGGAAGTTGAGATTGTAAGATATCACTCAAAATGAGAGGGAtgcgtgtctgtctgcatgtcttTGTCTAGATTAAAAGTGGACCAAAGTGATCTGATTTCTTTTGGTCTTCTCAGTAGTGGCCTCACCTCTCAGTATTTTTAATAGTGTTGTTTTAGTAGAGACACTTCAGACTCATCTGGATACTTCCAGAACTGCAGTTTATTGATGGGTTTCACATTTTTGATCCTGTTGAGCTGCTCAGCAGGAGAAATGCAACACATGAACAGATGAAATCAAACAGGCTTTGCTTGTAGCAACCTTTAGTTTACCTGCTTTATAAAGTGCACTCTAAGCAGCCAATGCTCAGTTTATCTCTCTAGACTCGTACATTTTCTACTGTAGCTGTGCTTCCTAATCTGCTCAAAACGACAGTAACACCTGTTTATAAAATCATTTTGGCTTAATGcaagaaaatacacattttcaCATTAAGACCGTAGCACCAGATTGTTTGTATAAGTAATACTGAGTAATACAGTTTTTGAATTACTTCAtgcattgtaaacaaattatttcTGTTTCCATGACACAGGTGTTACTTCCAGTCCTCCTTATAGccatgtttgtatatgtgtgtgtaataggactgcaactaacgattacttTGACAAGTATTTTCTTGAtcagttgtttggtctgtaaaatggTAGAAAATGCACTTCACTGTTTCCCaagcccaaggtgacatcttcaaattttgtctaaaacccaaagatatgtAGTTTACTGTCCTAGAAGACTATTCACTTATAAATGGCTGGAACCAGTCAATTTTGggtatttttgcttaaaaataacttaattgatttaaaaaaaaatagttgaaGATTAATTttcatattaattaattaattaattaattaacaaatCGATTCATCAACTGATCGTTTCAGCTCTAGTGTGTATGTTGTATGCAGGTATACATCCCATTAAGGGCCTTCATCACTGCCTTTACTTCCTGTGTAGCAGTAGTTAAATAGGTACAGTAGTGTAGCTGTGTCATTTACTGTCATTACATCCACAAATTCCCCACACAATAACCTTTGTATTGTTCCCCATCGTTGGGTCATTTTCAGTTCAATAAAGAACTTTAAAAAACACTGTGGGAAATGAGCCACAGCAGGTTATTCTTAGTAAGACACAAGAAATCGTACACAATTGTATCATGTCATTTAAATGACAACAGGAAGGCCAAGCAAGGTCGATATGTTTCCATAATGTTGCCTTGTCTTTGATAACTGTGcctcatattctgcttttggtctcaactatagaaatgtgcAAAAGCGTTTAACACATATCAAGAAACGTTGAGTAAAAATGCTACAAATTTGATAGCTTAAATATGTTGTAACATATTTTGTACTGTAGATGATAGTTtcatcttttttatatatattttcatttgtGATCTCTTGGTAAAAACTCATGCATTGTTTTTGTTAAGTGATGATTTGATATTCGTAGAATCCCCTTCTTCAAAACACCGGCCTCATTTGGTGCCCATGTCATTATCAGTGTCATAATGTGTTAGAGAACCATAGACGGACAGAACGTTAAGTTGATATGTAGCTGTGGTTTCAAAAGAAACTACATTTTTCATATATTGTATCAAACTCTTCATTAAAATGGGTTCTCTGTTTTAA

Function

GO: NA

KEGG:

id description
K08846 RIPK2; receptor-interacting serine/threonine-protein kinase 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154969 lncRNA downstream 44812 15407377 ~ 15407627 (-) True G114883
XR_005640790.1 lncRNA downstream 59180 15387478 ~ 15393259 (-) True LOC120568803
TU154900 lncRNA downstream 186215 15264520 ~ 15266224 (-) True G114836
TU154790 lncRNA downstream 370459 15076141 ~ 15081980 (-) True G114752
TU154756 lncRNA downstream 449394 15001144 ~ 15003045 (-) True G114733
TU155136 lncRNA upstream 258420 15721019 ~ 15727229 (-) True G115017
TU155169 lncRNA upstream 272455 15735054 ~ 15735281 (-) True G115041
TU155170 lncRNA upstream 272881 15735480 ~ 15735895 (-) True G115042
TU155171 lncRNA upstream 273930 15736529 ~ 15736827 (-) True G115043
TU155176 lncRNA upstream 279225 15741824 ~ 15745228 (-) True G115048
XM_039816775.1 mRNA downstream 574 15444472 ~ 15451865 (-) True LOC120568994
XM_039816567.1 mRNA downstream 34250 15417025 ~ 15418189 (-) True setd9
XM_039816394.1 mRNA downstream 37950 15409504 ~ 15414489 (-) True eif4a2
XM_039816037.1 mRNA downstream 121475 15329264 ~ 15330964 (-) True LOC120568473
XM_039816034.1 mRNA downstream 124812 15311382 ~ 15327627 (-) False LOC120568471
XM_039816203.1 mRNA upstream 21591 15484190 ~ 15518928 (-) True LOC120568593
XM_039816216.1 mRNA upstream 66559 15529158 ~ 15535803 (-) False si:ch211-13f8.2
XM_039816215.1 mRNA upstream 66559 15529158 ~ 15534187 (-) True si:ch211-13f8.2
XM_039816221.1 mRNA upstream 75297 15537896 ~ 15547357 (-) False zgc:55943
XM_039816220.1 mRNA upstream 75297 15537896 ~ 15546737 (-) False zgc:55943
XR_005640845.1 other downstream 39380 15412986 ~ 15413059 (-) True LOC120569143
XR_005640844.1 other downstream 39972 15412393 ~ 15412467 (-) True LOC120569142
XR_005640843.1 other downstream 40599 15411663 ~ 15411840 (-) True LOC120569141
XR_005640842.1 other downstream 41092 15411162 ~ 15411347 (-) True LOC120569139
XR_005640597.1 other downstream 147829 15290186 ~ 15304610 (-) False mfsd8l2
TU155326 other upstream 681561 16144160 ~ 16148121 (-) True G115164
XR_005640638.1 other upstream 720055 16182654 ~ 16201698 (-) True cc2d1b
XR_005640639.1 other upstream 720055 16182654 ~ 16201257 (-) False cc2d1b
XR_005640637.1 other upstream 720055 16182654 ~ 16201257 (-) False cc2d1b
TU155443 other upstream 868354 16330953 ~ 16335932 (-) True LOC120568735

Expression Profile