RNA id: XM_039816430.1


Basic Information

Item Value
RNA id XM_039816430.1
length 4668
RNA type mRNA
GC content 0.46
exon number 32
gene id LOC120568749
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 18988689 ~ 19013997 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACATCTCAGAAGAATACTAACAATGAAGATAACTTGCACAGCCTTGGTGCTTCTCATCCAAACATTACAATGTTTGGCCTCAGATGATTCACCATTTCTACTAACTAACAAGGCCACTGGTttttgtttggttaaaaaaaataacttctgcTTCGACGTACGCTGGACAACTGGTGACCGACTACTGTTTTTTTGGTTGAGTAAGTGCCTGGGAGTCCAGGGGAAAAGTGTGGGAAGTGAAATAGGCCTCTACGATTGTGATGAAAACAGCGACCTCCAAAAGTGGGAATGCAAGAATGGAACAGTGCTCGCCCTCAAAGACCAAGAGCTTTACATTGAGCTCACTGCAGATAACACAGCAGTGCTCTCCAAAACAATAGGACCCAATAACCACCTCACAATCTCAGGGACCTCCAGTGGTGCTTGTGCAAGAACATACAGAGAACTTTACACTATTGGAGGAAATGCAAATGGTAGGCCCTGCATGTTTCCCTTCCTGTACAAAGACCAGTGGTACTCAGCCTGTACTAAGACTGACTCCCCAGGCCGACGTTGGTGTGCAGTTCAAACTAGATATGAACATGAAGTCTGGGGCTACTGCCCAACTAACTCCAGAGAACACTGGAGCAAACACCCAACAGGAGCGTATTaccagctcaacacacaggcaGCTCTGACTTGGCCCCAGGCTGAAGCCAGCTGTAAACAGCAGGGGGCCTCCCTGCTCAGTATCACCGATCCTAACGAGAAGGCTTACATCACGGCACTACTAGGGACAGCGGGCAGGGGACAGGGGGACAAGCTTTGGTCTGGACTGATCCGGAACCCAGAACATGGCTGGCAGTGGTCTAATGGAAGGCCTTACCGTTATCTGAATTGGGACTCAGGACATCCACTTCCTAATCCGGGACACGACTGTACAATTGTTGATGGTGCTGTACAGTATGCCTGGCAAAGTTCATCATGCACCAAGAAACTGGGCTACATCTGCTACAGTGAAGGACCTGGGGCTCCTCCTACTGAAGCTGTTGAGACAGGATTTTGTTCAAGCCCTTGGATTCCCTACAATGGCCACTGCTTCCACCTCCAACGTACTCAGAAAACATGGTCTGATGCTAAGAAAGCGTGCCGCAAAGAAGGAGGGGACCTAGTCAGCATCCGCAATGTGGAGGACCAAAGCTTTGTCATCTCTCAGCTTGGCTATGCATCCACTGATGAGCTTTGGATTGGACTGAATGACAAGAAGACAGAAGGGCTGTTTGACTGGAGTGACCACTCTACTGTCAGCTTTACCAGCTGGGAGTTTGGGAAACCTGCTGTCTTTACTGACCAAGAAGACTGTGTTCTCATCAGGGGAGAGAATGGGAACTGGGCTGACCGTACGTGTGACGAGAAACATGGCTTCATTTGTATGAAGATGAGCGCCTCTGAACCCTCTGGAGATGAAGTGGAGCAGAATGTAGGCTGCAAAACTGGTTGGAAAAGACATGGTTCCTACTGCTACTTTGTAGGAACGGAGACAAAGACGTTTGATGAAGCTAAAGATGACTGCAAGACCTCAGATGCTTACTTAGCTGATGTTTCAAATGGGGTGGATAATGCCTTCCTCGTCAGCTTGGTGGGGATGAGACCAGAGAAGTACTTCTGGCTAGGCCTCTCAAACCAGAAAGACATTGATCAATTTGTGTGGACCAACACAGACTCTGTGAGGTTTACTCACTGGAATGCTGAAATGCCAGGTTACCAACAGGGCTGCGTTGCCATGACAACTGGGTTTTTTGCTGGCCTCTGGGAAGTTATGCCATGCACCAATAAGACAAAATACATTTGCAAACACCTGGCAGAGGGGGCTGTTTTAACGCCTGCACCACCAACTCCTACCCCTCTCAAGTGTGCAGACGGCTggaataaaatacaaacaagaAACTTCTGCTATAAGCGGTTTCCAGAGTCATCTTCAAACAAGAGGACCTGGTATGAGGCCAGAGATTACTGCAGGGCCATCGGAGGAGACCTGCTCAGCATCCACAGCGCTGCTGAGCAAATAATTGGACGCTTTGGAACAGTCTGGATTGGACTTAGTGCCCCTGACCCAGGAAGCGGTTACGTATGGAGCGATGGATCCCCAGTAAACTTCCAACACTGGAAGGACGGAGGGCCAAATAATAGAAACAATGTGGAATCTTGTGCTGAATTTATACCATATCTGCATGATCATGTAGGGTCTTGGAACAATGTGCATTGTGAGAAGTACAACAGATGGCTGTGTCAGATCCGAGCAGGGGCAACTCCAAAGGCACCTCCAGACCCCGTCACTCCTGACTACAATAAGACGTCAGATGGGTGGCTAGAATGGAATGGGAATCAGTATTATATTAACAGTGTGTCGATGGCCATGGAAGAAGCTCGTAGCTTCTGCCAACGGAGGCATAGTGACTTGGTAACTATCAACACTGAAGCTGAAAGTGTCTTTTTGTGGAAACAGatATCCCAACATAATAAACATTACTGGATAGGCCTGACACTAGATCTCGATCAAACACTTGAGTGGGTGGATGGTTCTCAAGTGGTGTTTCAAAGGTGGGATGAAGGTCAGCCTGATTTCCATAACTATGATGAGAACTGTGTTGTGATGACCTATTCTACTGGGTTCTGGCACGATTATAATTGTGGTTATGAGCACAGTTCCATTTGTAAACGCAGTGGATCACCACATGCCAACACCACTGTGGCACCCACAGTGGCCCCTAAAGGTGCCTGTCCATCCCAGTGGAAGAGATTTAACTCAAAGTGTTACAGAATCTTTAATGACCAGAAGGTAACATGGCGTGAAGCGAGGACACAATGCCAAGATGTGGGTGGAAACTTGGCCTCTATTCCCTCCAGACATGTGGAAGtgtttttgatgACTCAAATGGCTGACACACCTGCTACTACAGACGTTTGGATTGGTTTGCGCAGAACAAATACACGTGAATTTTATTGGACTGATGGGCGACCGAGGCAATATGTCAACATGGATTTAGCAGAACGCCGTATATTCAATCCATTTGGATCAAGATTTCTGGACCGAGAGAGTGCTCGCAGATATTATCAGTGGATATATAATCAACAAAAGGAACAGTGTGCTGTAATCAAAAGTGATCATTCGATTGGTATTAGGCAATGGATACCAAAGTCCTGCAATGACACAAATGGATTTGTCTGTCTTCAAAATATTGACCCATCCCTCTCAGACTCCCCTGAACCAACAACTTCAACCAACTATGTCAAAATATTTAATGACTCTATCAAGGTTGTTACTCAACAAATGAACTGGGATGAAGCCAAAAAGCACTGCGAAGGTGATGGTGCCACACTGGCTAGCCTGCGAAACAGGTGGTTACAGGCCTATGTTGAGCTGCTGGCTTTGAATCTCAACGCTCCTCTGTGGATTGGACTAAACAAAGTGCAGACAAATGGGTACTTCACATTTACTGATGGCTGGCACATGAGCTTTTCTCACTGGGGTAAAAATGAACCAAGCGGTGACCGACCTTGTGTCTACGTAGATCTGGATGGAAAATGGAAGACTGCTGACTGCAATCGGACCATGAACAGTGTTTGTATGAGGTCTACAGATTTGCCACCAACAGAGTCAAGTGGTTTTCCAGGAGTTTGCCCTGAAGATCCAGATTCATCAAATACAGACCAGCATTACTTCTGGCTACCATTTAAAGGTTACTGTTACATATTTTTCACAGAAGAAAAAGAGTGGGCAGATGCATCTACTAGCTGTGTAAGACATGGTGGATCACTAGCCAGTATTGAAGATCCCTTTGAGCAAGAATTCATTCAAAGCAATGCAAACATGTTTAAAGACAGCCACACCTCGTTCTGGATTGGCCTGTTTCAAACTCACAAAGGGGAATGGTTGTGGTTGGACAAAACGGTCATGGACTACACTAACTGGGCTGAAGGTCAACCTGGTGATCGCAGCTACGGCAGGATTAGCACTTCAACTGGGAAGTGGAGTGCAGGCCATCGGCAGTATTCTAGACCATACATTTGCAAAACAGCCAAAgTATTACCACCAACACTTCCAACATCACCAGCTGCTGTAGTTGATCTTGGTCAACGTGGCCACATACCTTTGGCAATTGTGGTGGTCATTACTGGGATTGCCATTGGGGTGGTCACTGCCTTATTCCTCTTCAAGAAGGTCGCTCGTCGCTTACCCGTCCCTGACACGTTAATCACCTTTGACAACCCAGTCTTCAGCAATGAGTGGTCACAGCCTAATGTGGTTGACACCAATGATCATGTAGAGAACTTAGAGGAAAAGAGCCCTGAGCCCCTTATAACACAAAAATGAACAGAATCAGAATCTAATGGTACACATACTCTTATCGAGGGCTCATGGTTAGTGGCTTCTCTTTTGCACGGCCAATGATTTCACATTCTGTTCTGAGAGGAGTTGGCAATGAGTGGCTATAATGGCCAAATCTATTTAGACTGTAGGATGTCTTTATTTGGAATGATAGTTTGAAATCATATTAAATCATATCTTTGTAATGACTAAGGGACTGGGAAGAATTCCATACACATTTTGTACTTCATTATAACTGTTATAAACTGTGAtaaaattatgtattttaataCTTGTTACAGATCAGCTGCTGTGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156382 lncRNA upstream 2756 18985728 ~ 18985933 (+) True G115971
TU156334 lncRNA upstream 54777 18931926 ~ 18933912 (+) True G115934
TU156330 lncRNA upstream 65519 18922753 ~ 18923170 (+) True G115931
TU156312 lncRNA upstream 122555 18865126 ~ 18866134 (+) True G115923
TU156310 lncRNA upstream 145895 18842572 ~ 18842794 (+) True G115921
TU156470 lncRNA downstream 152518 19166515 ~ 19168570 (+) True G116042
TU156472 lncRNA downstream 159061 19173058 ~ 19174369 (+) True G116044
XR_005640783.1 lncRNA downstream 338092 19352089 ~ 19354967 (+) True LOC120568775
XR_005640777.1 lncRNA downstream 353483 19367480 ~ 19373819 (+) False LOC120568772
TU156504 lncRNA downstream 353636 19367633 ~ 19373820 (+) False LOC120568772
XM_039816431.1 mRNA upstream 3813 18969309 ~ 18984876 (+) True LOC120568750
XM_039816432.1 mRNA upstream 3813 18969309 ~ 18984876 (+) False LOC120568750
XM_039815885.1 mRNA upstream 68646 18868089 ~ 18920043 (+) False si:ch211-106h4.9
XM_039816472.1 mRNA downstream 3042 19017039 ~ 19052242 (+) True LOC120568770
XM_039816438.1 mRNA downstream 53453 19067450 ~ 19104441 (+) True LOC120568752
XM_039816439.1 mRNA downstream 53454 19067451 ~ 19104441 (+) False LOC120568752
XM_039816457.1 mRNA downstream 206208 19220205 ~ 19226563 (+) True clul1
XM_039816467.1 mRNA downstream 246198 19260195 ~ 19266270 (+) True adcyap1b
TU156233 other upstream 314627 18672562 ~ 18674062 (+) False LOC120568691
TU156065 other upstream 634345 18305149 ~ 18354344 (+) True G115729
TU155940 other upstream 958794 18027280 ~ 18029895 (+) True LOC120567767
TU155758 other upstream 1548226 17407491 ~ 17440463 (+) False LOC120568596
XR_005640724.1 other upstream 2462261 16439025 ~ 16526428 (+) False LOC120568419
TU156400 other downstream 3061 19017058 ~ 19018726 (+) False LOC120568770
unassigned_transcript_559 other downstream 502856 19516853 ~ 19516945 (+) True trnar-ucu_13
XR_005640618.1 other downstream 1359238 20373235 ~ 20375633 (+) True LOC120567833
TU157037 other downstream 1868709 20882706 ~ 20915288 (+) False LOC120568904
XR_005640709.1 other downstream 2856956 21870953 ~ 21897391 (+) False LOC120568354

Expression Profile