RNA id: XM_039816434.1


Basic Information

Item Value
RNA id XM_039816434.1
length 5382
RNA type mRNA
GC content 0.50
exon number 38
gene id myom1a
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 19486691 ~ 19509566 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATTTTTGTTCAGTGGACTGCCATCCTGTCCACTGCCCCTCACCCTGCTGCTTTGCCCAGATCTGGACTTGCTTTAGCTACTTTTGGAATAGCACACTCTTTCTCTTATTGTCAACTATTTTGGATTGGTAAATTCTTAATCGTGGTGAGTGATTGAAGCTGGTTAAGTAACGAACAGTCAACATATAAGTTGGCGGAGTGGCCCTCAGGATGTCAGGATCAGTACAAGTGACGCAGAAGCTgcagcatcagcatcagcatcaacagcagcagcagcatcactATGAGAGCAGCTGTCACCTAAGCACCAAGTCGTCTGTTAGCAAGCAGTCTTTCTCCACTTACAAGACTTCCAGCCGTCGCCTGCAGACCACTGTGAAGACAGAGAAGGGGAAGGAGGTGGTTAAACTGAGCCCGCTACCCAAGAGAGCCAAACGCACCTACCTGGCGATGGACACAGACAAGGAAGTTATCGGCTATGTCATTCCCGTATTTAGAGCCAGTCATGATGTTGTCCGCGGTCTGACGGAGGCCCAGGAGGAGAATGTTACTGAGGAGGGGATTAACTATGTGGCCATGAGGAACCTGTTTGTCAGGGAGGCCAGGGAGGCTATGGAGGTTAAAGTGGAGAAGAGAACAAGAACAACGCATATCAGGGAATCTGCCGAACGCATGGAACTAGGCAAGACGATGGAGGAGTGGGCAGAGTTCCGTAAGAAAATGAACCCAGACAGCCTGACACACCGTCCAGAGTTTATCGTCAAGCCCCGTGGACAGACTGTCTGGGAGGGCAAGACTGTCAAGCTGCACTGCACAGTGGCTGGATGGCCTAAACCCAGGATTGCCTGGTACAAAAACAATGTGCTCATTGATGCCAAGGCTCACCCCGAGAAGTACGCAATCGAGAGCAATTACAACATGCACTCCCTGGAGATCAAGAActgTGATTTCATCGACACTGCTCAGTATCACGTCTCTGCCCTCAACGTGAAAGGGGAAGTTTCCTCTGTGGCTACTATTGTTGTCAAAAGGTTCCAGGAGGGCAAGGAAGCAGGCCCACTTGATCCTAAACCACATGGTTTCTGCGCTGAGCATGGTGTCACCTTTGAAACAACCATCATTGACAAATTTGAAGTGGCTTTTGGCCGTGAAGGCGAGACATTGAGTCTGGGCTGCACTGTCATCGTTTATCCCACCGTGAAAAAATACCAGCCTGAAGTCGTCTGGTACAGAAACTCTGTCCCCTTGAAGCCCTCTAAAtgggtacacacacactggtctGGGGAGCGTGCCACATTAACACTTGTCCACCTCAACAAGGAAGATGAGGGCATGTACACCCTGCGCGTCAACACCAAATCTGGCTTTGACACCTACTCTGCTTATGTGTTTGTCAGAGATGCCGATGTGGAGGTTGAGGGGGTTCCCGTGGCCCCCCTGGATGTGCGCTGTCATGATGCCAACAAGGACTATGTGGTGGTGACCTGGAAGCAGCCAGCGGTGGAGGGCAGCAGCTCCATCCTGGGATACTACATTGACAGGTGTGAGGTGGGCACTCACCACTGGGCTCAGTGTAATGACGCCCCAGTGAAGTATGCGCGCTTCCCTGTCACAGGACTGGTTGAGGGGCGTTCTTACATCTTTAGGGTGCGGGCCTTGAACAAGGAAGGAGTCAGCCGTCCATCCCGTGTCTCCGAGGCCGTGGTTGCCATGGATCCCTCCGACAGAGCCCGTCTACGAGCTGGCCCCTCAGCTCCTTTTACTGGGATGATCAAGTTCACAGAGGAGGATCCCACTGTGGGTGTTGTCCCCGGAGAACCCAGTGATGTTGTGGTTACCGAGGCAACCAAGAGCTACGTGGTGCTCGCCTGGAAGCCTCCAGTTCAAAGGGGTCATGAAGGAGTCATGTATTACATTGAGAAGTGTATTTCAGGGACAGACATCTGGCAGAGGGTGAACACTGGTATGCCAGTCAAGTCTCCCCGCTTTGCCCTGTTTGACCTGGCAGAGGGGAAATCCTACAGCTTCCGTGTGCGCTGCTGCAACTCCGCTGGCGTGGGCGAAGCCTCTGTATCCACAGGAGAGATCACGGTCGGAGATAAACTGGACCTGCCCTCAGCTCCAGGCAATCCAGTGGCCACCAGGAACACTGACACCTCAGTGGTGGTCACCTGGGGGGCCTCTCAGGTCAAACACCTGGTCGGCTACTATATTGAATATACCGTGGTGGGCACTGATAAGTGGATGCCTTGTAACAACAAACCTGTCAAGCAGACCAGGTTTGTGTGCCACGGCCTGACTACCAGAACAAACTGCGTGTTTAGGGTCAAGGCAGTCAACGCTGCAGGTTACAGCCAGAGCTCCCCCGATTCTGATGCGGTGGTTGTGCAGGCTGCCATCTCCGTCCCTGGAAAACCCACCGGTGTGAGCCTGGTGGAGGCTGTAAAGGACTACATGGTGCTGGCCTGGACTGCGCCTGCTAGCACTGGAGGAGCCGATATCAGGGGATATTTTGTGGACTACAGGGCCGTAAAGGGAGACGTTGTTGGAAAATGGCATGAAATGAACCACAAGGCTTTGACTACTACCTCCTATAAAGCTGAAAACCTGAAGGAGAACGTCTTCTACCAGTTCCAGGTGCGCGCTATGAACATGGCCGGCGTGAGTAAAGCCTCTCTGGCCAGTGCAGCTCTGGAGTGCAAGGAGTGGACCATTACTGTGGCAGGTGCTCCTGTTGGTCTTCATGTGCTGGAGGTCCGTGACACCTCTGTCGTGGTCCTGTGGGAGCCACCTGCATTTAATGGCCGCACTCCTGTCAATGGCTACTATTTGGATGTCAAGAAGGCCTCTGCTGGAGAGGAAGGCTGGAAGGCTGCTCATGAGAAGACCAACAAGATGAAATACATGAAGGTGACAGGGCTGAAGGCTGGTACATCCTACGTCTTCCGTGTGCGTGCTCAAAATCTTGCTGGAGTTGGAAAGCCCTCAGCAGTCTTAGGTCCAATCCTGGCCCAGACTCACCCTGGCACCAAAGAGATTTATGTGGATGTCGATGATGATGGTGTGATCTCTATGATCTTTGAGTGCTCTGAAATGAAGGAAGGCTCTGAGTTTGTTTGGTCCAAGAATTACCAGACTATAACTGACACCTCTCGCTTGACTATTATCACTGAGCAGGGCAAGTCAAGAGCTATCTTCAACAGTCCCTCCCTGGAGGATCTGGGCATATTCTCCTGTGTGGTCACCAACACTGATGGCATCTCCTCCAGCTACACACTCACTGAGGAGGGTCTCAAGCGTCTTCTGGACATCAGCCATGACCACAAGTTCCCTGTTATTCCCTTTAAGAGTGAAATGGCCATGGACTTGCTCGAGAAGGGTCGCGTGCGATTCTGGACTCAGGTGGAGAAATGCACTTCTGCCTGCCAAGTGGAGTATGTCTTTAATGATGTCATCATTACTGAGGGAAAGAAATACACAATGAACTTTGACAAGTCCACCGGCATCATTGAAATGTTCATGGACTCTCTGGAGGTCACAGATGAGGGAACGTTCACCTTTAACCTGGTGGATGGCAAGGCTAAGGGTACAACCAGTCTGGTGCTCATTGGAGATGAGTTCAGGGAGCTTCAAAAGAAATCCGAATTTGAAAGGGCAGAATGGGTCAGGAAACAAGGTCCTCACTTTGTCGAGTATCTCGGCTTCACTGTTACTCCAGAATGTAATGTGCTGTTGAAATGCAAGATAGGAAATGTCAGACCAGAGACTGAGATCACCTGGTCTAAGGACAGCATTGAGATTGCAGAGGATGATGAGGACGCTCAGAAAATTGAGAGGAAGGACGGGGATCTGACCTTTAATATCGGAAAGTGGGTTATTAAGCAGGAGAAAccgaaagaaaaaggaaaaaagccaACTGCAGAGGATGTTCCCCCACCACCAAGACCCAAAATCTCCAAGGCGGATGCAGGTATTTACGGGGTCATCCTGAGGGACGACAGAGGCAAAGATAAGAGCACCTTCAATCTGACAGACGCAGGATACCAAGCTGTAATGAATGAGCTGTTCAGGGTTATTGCCAACTCCTCCTCTGAAATCACAGTCGTCAGTACTGAACATGGCATCATCCTCTCCTCCACGGTCACATATTACAATGAGGAACTGCGTGTTGGTTGGCTCCAAAAAGATGCTAAGATTGCCGCCTCAGAGAGAGTTAAGTCTGGAGTCACAGGAGAGCAGCTTTGGCTTAAAATCAATGAGCCCACTGAGAAGGACAAGGGCAAATACACCATGGACATCTTTGATGGCAAGGACGGTGTAAAGAGAGTCTTTGATCTGAGTGGCAAGGCATGGGAAGAGGCATTTGAAGAATTCCAAAGGCTCAAGGCAGCAGCAATCGCAGAGAGAAATCGCGCTCGTGTTGTTGGAGGCTTGCCAGATGTGGTTGCGATCCAAGAGGGCAAGtCCCTGAACCTGACTGGCAATGTCTGGGGCGAGCCGGTACCTGAGGTCAGCTGGACGAAGAACGATAGAGAGCTGGTATCTGACGAGCGCTACAAACTCAAGTTCGAGCACGGCAAGTTTGCCAGCATCACAATCGCCGCCGTCACCACGGCTGACTCAGGCAAATACGCCCTCCTGGTCAAGAACAAGTACGGCACAGAAGCTGGCGAGTTCACCGTCAGCGTCTACAAcccagaagaggaggagaacaaggaggagaagaaaggcTAAAGGATGATGCAGTGTAATGAAATAAAGTAGAAAAGATGAACGATTGGGCTATCTCCAAAGCATTTTACCCCCGGCACATGCCGGTGCACTTAGCAgtttaaataaatgattaatacagctgcttcctcctcctccttctttatGTGCTGGGCTAAAGAGCTTTGGGCATTGCTTGTCGAGGAAGCAAACAATGAATGTGATAGAGAGGATAATTGTGTGCTTGTAGTTGCTTGACAAGTCTTCTATCACTTCTGATTGCTATCAGCAGTACATGTGATGTTTAATCATTGGAGGTGGTTGATCTATCATTAATCTTTGTTTTAGCAATGAAAGCCAGCAAGATTAAGGTTGTTTTTAACTATTCTTACATTTGGAAAACCTTGAACCTGTGAAACCAAGTTATGCCTGAGGTTTATTCactgtaaaaagaaataaagggaaaaacccTGATGTAATGACCTTCCCACCAGCTATTTGCTGTGTTGTGTGGCACTGGAAAATGTGTTAGTGGATATGTCCCATGCTCCACTGATAAGAGCTCTTGGTGTCTATTTATAAACAGCTATTATGTTTAAATTgtactgtgtgcatgtatgttatGTGCCGTACATTTTGGAAGTGTCAATCATTACAACAATTTGTAGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156524 lncRNA downstream 76415 19410049 ~ 19410276 (-) True G116091
TU156515 lncRNA downstream 262611 19223828 ~ 19224080 (-) True G116082
TU156518 lncRNA downstream 263202 19223263 ~ 19223489 (-) True G116085
TU156513 lncRNA downstream 265048 19220715 ~ 19221643 (-) True G116080
TU156480 lncRNA downstream 318199 19166515 ~ 19168492 (-) False G116050
TU156634 lncRNA upstream 97101 19606665 ~ 19617420 (-) True G116182
XR_005640774.1 lncRNA upstream 121933 19631497 ~ 19632872 (-) False LOC120568771
XR_005640773.1 lncRNA upstream 121933 19631497 ~ 19632872 (-) True LOC120568771
TU156643 lncRNA upstream 121934 19631498 ~ 19632869 (-) False LOC120568771
TU156632 lncRNA upstream 129962 19639526 ~ 19640657 (-) True G116180
XM_039816443.1 mRNA downstream 735 19465952 ~ 19485956 (-) False lpin2
XM_039816446.1 mRNA downstream 3669 19465952 ~ 19483022 (-) False lpin2
XM_039816442.1 mRNA downstream 3670 19465952 ~ 19483021 (-) False lpin2
XM_039816441.1 mRNA downstream 3670 19465952 ~ 19483021 (-) True lpin2
XM_039816445.1 mRNA downstream 5270 19465952 ~ 19481421 (-) False lpin2
XM_039816466.1 mRNA upstream 3979 19513543 ~ 19516574 (-) True bag1
XM_039816465.1 mRNA upstream 9972 19519536 ~ 19524482 (-) True chmp5a
XM_039816458.1 mRNA upstream 18599 19528163 ~ 19532230 (-) True oprk1
XM_039816452.1 mRNA upstream 33286 19542850 ~ 19573287 (-) False atp6v1h
XM_039816455.1 mRNA upstream 33286 19542850 ~ 19573273 (-) False atp6v1h
TU156578 other downstream 21311 19464700 ~ 19465380 (-) True G116138
TU156517 other downstream 263965 19221791 ~ 19222726 (-) True G116084
TU156358 other downstream 551214 18931974 ~ 18935477 (-) True LOC120568972
TU156342 other downstream 640414 18844905 ~ 18846277 (-) True G115941
TU156258 other downstream 768147 18716882 ~ 18718544 (-) True LOC120568909
TU156767 other upstream 284270 19793834 ~ 19795709 (-) False xcr1b.1
TU157096 other upstream 1498485 21008049 ~ 21010569 (-) False higd1a
TU157655 other upstream 2752434 22261998 ~ 22263498 (-) False G116969
TU157659 other upstream 2753559 22263123 ~ 22268559 (-) True G116969
TU158039 other upstream 3920802 23430366 ~ 23430992 (-) True G117259

Expression Profile