RNA id: XM_039816442.1


Basic Information

Item Value
RNA id XM_039816442.1
length 4725
RNA type mRNA
GC content 0.47
exon number 20
gene id lpin2
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 19465952 ~ 19485956 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTTTATGACAGTGTTGCACAATCGCGTCCGATAGCAGTGTAGTGGTATTTAGCCTTGGAAGGGTTATTCTAACGTTATTAGGTGGGCAACATTTGAGATTGGATTCAGGATGGCAGGGAGGCATTATTATCGTAATCTGAGGGTGGAAAACATTGGTCCCAGTGGAGTATCCTGAGGTGGGTAAGGTAAGAGAGCTGGTGCTCTACTAACTGTGATGAAGAGACAGAGATCCTGGGGGGACAGGGAGCTCCTGGGATGCAACACAGACAACAGTGAACAGGATGAGTCCTCATCTCTGAGGTCATATTGGTCCTTGGCGGACACCATGAACTACGTGGGCCAGCTGGCAGGTCAGGTGCTGGTAACTGTCAAAGAACTGTACAAGGGCATTAATCAGGCCACGTTGTCGGGCTGCATTGATGTTGTGGTTGTCCGCCAGAGAGATGGCACCTACCAGTGCTCACCATTCCATGTGCGCTTTGGCAAGCTGGGTGTACTCCGCTCCAAAGAGAAAGTGATTGACATCGAAGTGAATGGAGAGCCGGTAGAGCTGCACATGAAGCTTGGTGACAATGGAGAGGCCTTTTTTGTCCAGGAATCTGAGCAGCTGAATATTGTCCCTGCCCACCTGGCCACCTCTCCAATCCCCACCGAGAGTCACCTGTTCTGGATCTCAGAGGTTGAGCACAGGGCACCGAAAGATCTGGAGGATGACCCCGCTGACCCCGAGGACCCACCCGAGCTCCCTGCTCCGAACACCATGTccacaaaaaagaagaagagacgGAAGAAGAAGCACAAAGGAGACCCCCGAAGAGAGGAGCTGACCCCGCCCATGTCAGTGACGACGGGTAATGCTATTGCTGCTAACGCACCTGCTGCTACGACTGCTGCTATGTCCAGCACTGGGCAAAATGAAGAGATCTTTGAGATGGACATGAGCTCTGACGAGGAAGCTGCAGCACATGTCTCGAGGTCACCTTCAGTGACCACAATGCGAGACATTGACCCCAAATTACCCGCAGCCAGACACAGCCTCGATGGTTATCCACTGTCTGATGGGGACTGGCCGTCAAATGACAGTCATGGCTTGTCTCAGGCCTTTTCCCCAAAGAGTGACTCTGAACTTATGGTCAGGCCCTCAGAGTGTTTGCTCAGAGCGGAGTCCCACATGCAGTGGACCTGGGGGGAGTTTCCAGAAACAACCAGGGtcaccaaaaaagaaaaaccagaACTACTAAAAACAGTGACCATCACCCCATCAGAGAACACCCACTTCCGCGTCATCCTCAGCTCTGAGGCCATGGAGAACGACACTGAGATTGAAAGGGGAGGTGGTGCCTCCTCTTCCGTGTGTACCATCGTCAAGCCCGAGCCACGCACCCCTATCACCACTGTAACACCCGTGATTCCTCTCACATCTGTTGACACCATTACATCTATGAGTCCTGTAACCCCCACAGAGCCCCTGGATGTCCTGCCACCCAGTGTGGCAACCTCCACCCCTTACAACAGTCAACAGAGCGATTCACCCTCTAAGAAGAAAGGTGTCCCAAAGAGGAGCCAGCATCAGGGTCCCGAGGATATCTACCTAGATGACCTGAATGTACTTGAACCTGATGTTGCTGCACGATATTTTCCTAAGAGTGAGTCTGAGGCAGCGACAAAGCACTGGATGGACTCAGAGATGCACTCTGGTTCCCAGTCTCCACAGTCAGTGGGCAGTGCAGCAGCTGACAGCGGGACAGAGTGTCTTTCTGACTCGGCTAGTGACCTCCCCGATGtcactctttctctgtgtggaGGCCTCACAGAAAATGCTGAAATATCCAAAGAAAGGTTCATGGAGCATATCATCACCTATCTGGAATTTGCTGAAAATCCAGCAATAATAGATAACCCCAACCTGGTAGTAAAGATAGGAAATAGATATTATAATTGGACACTAGCTGCACCCTTGATCCTAAGTCTACAAGCATTTCAGAAGAACTTACCAAAGGCTACAGAGGAGGCCTGGGTGAAGGAGAAAATGCCAAAGAAGTCAGGCCGCTGGTGGTTCTGGCGAAAAAGGGCAGATAGTACAATCAAGCAGTCTGAGACTAAGCTTGAAACCAAGGAGGAGTCTCAACTGGAGGAGGAAGGACCCTCCATGTCTCAGGAGAAACTGCCCTTACAGCCTAAAGCAGGAGACTCGTCCAGTGATGAAGAGGCCAAGGAGGTGAGCGCTGCATCCTGTCAGGAGAGACTGCAGTCAGTAGATAGTCAGCACCACACCAGCCCACACACTTACAGGAAGTCACTACGCCTCTCCTCTGATCAGATAGCCAGTCTGAAACTGAAGGAGGGACCTAATGATGTGACCTTTAGCATCACCACCCAATACCAGGGCACATGCCGCTGCGAGGGCACCATCTACCTGTGGAACTGGGACGACAAAGTCATTATCTCTGACATTGATGGCACCATCACCAAgTCAGATGTGTTTGGACAGATCCTGCCACAGTTGGGGAAGGACTGGACCCACCAGGGCATTGCCAAGCTCTACCACTCAGTAGCTGAGAACGGCTACAAATTCTTGTACTGTTCAGCGCGGGCTATTGGCATGGCTGACATGACAAGAGGTTACCTGCAGTGGGTCAATGATGGAGGCACCATTCTACCCCGGGGACCTCTAATGCTGTCTCCCAGCAGCCTCTTCTCTGCCTTCCACAGGGAGGTCATTGAGAAGAAACCAGAGATCTTCAAGATTGAATGCCTTACAGATATCAAGAACCTGTTCCAGCATAACAAGCAGCCATTCTACGCCGCCTTTGGGAACAGAGCTAATGATGTGTTTGCCTATAAGGAGGTGGGAGTTCCAGTGTGTAGGATCTTCACAGTCAACCCCAAGGGAGAGCTGATCCAGGAGCAGACCAAGGGCAACAAGTCCTCTTACAGCAGGCTTAGTGAGCTGGTGGAGCATGTGTTCCCTCTGTTGAGTAAAGAGCAGAACGAGGCCTTTGTCTTGCCGGAGTTCAGCTCTTTCTGTTACTGGAGACAGCCCATACCAGACATCAACCCTGATGAACTGCTCTAATCCAGCACATATGGATGCCCAGGTGCTCATATACATGCAATTGGACTGTGCACTTGAATGCATCTCCAGGAAACACATGGATTGAAACCCAAACTTTCCTATATAGCACtcatatgcacacacagtgTCAGGGTTATgaccataaaacacacacacaaaaaaatggtgAACAGTAATTACCCATTCAAGAGGAATGGGAAATTACGAAGTTATCTCCAGAATTTTACCCCAGTGAGCACTCTAGTCCCCATCAAAGTACTGGGATAAATATCAGAGACTAATCCTTTCACTTGGTAACTTCTAGCAGGGAAGCGAATGAAGCCCCACACCAGGCACTAGCCCCTTAGCACCAGAGTCTGTGCTGCGCAGAAGGGAAAgacattgtttttattgaatCAAGTTTTTCCACATTTATCGAACGCCCTGAAGAAGTGAATGTTCAaagcgacaacaacaacaaaaagacacacaggGTAGGCATTTAACACTGGCCACTGGTCACATGCCGGTAATATTTAGCTGTGGCTGCTATGTTTACCTAGACACAGGTATCCAGTCTTTATTCGGTTCTAAAACATGAAGTAAAACAGTGGTTAATGGCTGGAGAGTAACTGCTGCACCACCTATGAACCGTAGACTGCAGTTAGTTACTGTAGGTGTTCAGTTTTGTTCCTGACTCTCTCGACTCTGGACTGAAGTTCAGTTCTGCTGCTGGAGCAGCTTTCAGATCGCCACTTTATCCTTGGAGAGCTTATGAGTCATGTTTGGTATTGTTAATATTCATGGTCATAGCAGGGATATTCGTTTGCCAACAAGTATGTGAAGATACACATTTAGGTGTGACTTAAAAACAATATGAAGCAGCTTCATGGTATATTGTCTCGCTGTTATTTTAACATGATTATTGTGTTATACAAGCTCTGGCAAAATCAAGTGCGTTTTGTTAACAATGCAGTCATTATTTAAGATAATTGGTATGTTTTTAAGTTATTGATTTCTATCGTGATTGCCTTTGCTTGTCTGAAAAAGTAATTTATCGCCAATGAAATGTGGATATACTTCAAATTGGTATTTTGTATGGTTGGTCATACTGTAGGTTAACATGCTCCTAACCGTAACTGCTAGGCCTTGTgtacaatctttttttctttttagcctTGTATCCCATTTTCACAACGATTTTGTATTCCTTGTTTTACAGTGAAACTTTCAACATGTAAGGTCTAAACACATTCCTCAACCTCATAATCCACAGCTTTAGTATTAaaatattcatttaaatgtaaatgataGCACTCAAACTGGAACAGTGGAAATAAGCAGATCTGGAGAGAAGGCTTAAAATGAAGGATTTTTGGTTCGCAAGGTCCTCTGTAGGACTATGGGAAGATGCAAGTTTGTCTGTGCGCGCATGCATACCTAATCACTgagtgctgctgctgttggggTGACAGGATTCATTCACGCTTTTCTTATGTTCCCTCAGTGGCTTTGCCGAGACTTATCCTACGCACTTTGTCTAAGCTGCACTCAGAACACTTCTCCCCACAAGCACTTCACTGAAGGTCTCTATAGACATCAGACCAGAGTATGCAATTAATGCAGAATGGAAGAGTTCTAGTTTTACCTCTTTGTTGTGTGAGTGACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156524 lncRNA downstream 55676 19410049 ~ 19410276 (-) True G116091
TU156515 lncRNA downstream 241872 19223828 ~ 19224080 (-) True G116082
TU156518 lncRNA downstream 242463 19223263 ~ 19223489 (-) True G116085
TU156513 lncRNA downstream 244309 19220715 ~ 19221643 (-) True G116080
TU156480 lncRNA downstream 297460 19166515 ~ 19168492 (-) False G116050
TU156634 lncRNA upstream 123644 19606665 ~ 19617420 (-) True G116182
XR_005640774.1 lncRNA upstream 148476 19631497 ~ 19632872 (-) False LOC120568771
XR_005640773.1 lncRNA upstream 148476 19631497 ~ 19632872 (-) True LOC120568771
TU156643 lncRNA upstream 148477 19631498 ~ 19632869 (-) False LOC120568771
TU156632 lncRNA upstream 156505 19639526 ~ 19640657 (-) True G116180
XM_039816450.1 mRNA downstream 210417 19226837 ~ 19255535 (-) True yes1
XM_039816447.1 mRNA downstream 249702 19182182 ~ 19216250 (-) True colec12
XM_039816451.1 mRNA downstream 284584 19168623 ~ 19181368 (-) True stam
XM_039816459.1 mRNA downstream 299809 19160906 ~ 19166143 (-) True si:dkey-32m20.1
XM_039816448.1 mRNA downstream 338757 19119142 ~ 19127195 (-) True LOC120568757
XM_039816436.1 mRNA upstream 3670 19486691 ~ 19509566 (-) False myom1a
XM_039816433.1 mRNA upstream 3670 19486691 ~ 19509566 (-) False myom1a
XM_039816437.1 mRNA upstream 3670 19486691 ~ 19509564 (-) False myom1a
XM_039816434.1 mRNA upstream 3670 19486691 ~ 19509564 (-) True myom1a
XM_039816466.1 mRNA upstream 30522 19513543 ~ 19516574 (-) True bag1
TU156578 other downstream 572 19464700 ~ 19465380 (-) True G116138
TU156517 other downstream 243226 19221791 ~ 19222726 (-) True G116084
TU156358 other downstream 530475 18931974 ~ 18935477 (-) True LOC120568972
TU156342 other downstream 619675 18844905 ~ 18846277 (-) True G115941
TU156258 other downstream 747408 18716882 ~ 18718544 (-) True LOC120568909
TU156767 other upstream 310813 19793834 ~ 19795709 (-) False xcr1b.1
TU157096 other upstream 1525028 21008049 ~ 21010569 (-) False higd1a
TU157655 other upstream 2778977 22261998 ~ 22263498 (-) False G116969
TU157659 other upstream 2780102 22263123 ~ 22268559 (-) True G116969
TU158039 other upstream 3947345 23430366 ~ 23430992 (-) True G117259

Expression Profile