RNA id: XM_039816465.1


Basic Information

Item Value
RNA id XM_039816465.1
length 1198
RNA type mRNA
GC content 0.44
exon number 8
gene id chmp5a
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 19519536 ~ 19524482 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTCAACCAATGGGAACCGTTTGCGTCTGAACCGTTGCTTCCGGGTGTGTTAAATGAAGAAATCCTTTTTCATTTGAtgctttttgtattttgtaaagtaactaaaagctACAGGGACACAAAACGTTTAGAAAATGAACAGAATATTTGGACGCGGAAAGCCGAAAGCGCCTCCCGCGAATCTGTCGGACTGTATCGGCAATGTGGATGCGAGATCAGAGTCCATAGAGAAGAAGATTGGCGGACTAGACGCTGAACTTGTCAAGTACAAGGATCAGATGAAGAAGATGAGAGATGGGCCCTCCAAGAACATGGTGAAACAGAAGGCCATGAGAGTCCTGAAGCAGAAGAGAATGTATGAAGGTCAAAGAGAGCAGCTGGCTCAGCAGTCTTTTAACATGGAGCAGGCAAACTACACCATCCAGACATTAAAGGACACCAAAACAACAGTGGAGGCCATGAAGATCGGTGCAAAGGAAATGAAAAAGGCTTACAAGGATGTCAAACTTGATCAGATTGACGATTTACAGGACCAACTGGAGGACATGATGGAGGACGCCAATGAGGTACAAGAGGCCCTGAGCCGCAGCTATTGCACTCCGGAGATAGATGAGGATGATCTTGAAGCAGAGCTGGAAGCACTGGGTGATGAGCTGCTGCTGGATGATGACAGCTCCTACCTGGATGAGGCCTCGGCTGCCCCCTCTATCCCTGAGGGAATCCCCAGTGACAGCAAGACAAACAAGGATGGCGTTTTGGTGGACGAGTTTGGCCTGCCACAGATTCCTGCCTCATAAACAAGGAATGGATTAAAACAACTGCACTTCAACTGAAAACACTTTTTATATGTAGAGTAACATTTATACATGCAAAacatttgacctgaggacacgAGGATTTTAATGCTATCGTGGTGTTGGGTTGTGTATCGTTACCACTACCGTGCTAGCTTGTGGCCTTGTAACATactgaacctttttttttaaaaacattattcCTGTCTAACATTTGTCTGAATTGTCAGTCTCGTCCATCTCCAGTATTACCAAGCTTAATTTATTTGTCTTATTTGTATTCTAGTTTTGTGTGTTGTCATTACTAGTGTTCTGAGTTCTCAAAAGTGGAGAGGGTTCCCACTGAGCCTGTTCAAATATCTGCAGGTTATTTGAAAcatgcaaaaataaatgttttaatgtaa

Function

GO:

id name namespace
GO:0015031 protein transport biological_process

KEGG:

id description
K12198 CHMP5, VPS60; charged multivesicular body protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156524 lncRNA downstream 109260 19410049 ~ 19410276 (-) True G116091
TU156515 lncRNA downstream 295456 19223828 ~ 19224080 (-) True G116082
TU156518 lncRNA downstream 296047 19223263 ~ 19223489 (-) True G116085
TU156513 lncRNA downstream 297893 19220715 ~ 19221643 (-) True G116080
TU156480 lncRNA downstream 351044 19166515 ~ 19168492 (-) False G116050
TU156634 lncRNA upstream 82183 19606665 ~ 19617420 (-) True G116182
XR_005640774.1 lncRNA upstream 107015 19631497 ~ 19632872 (-) False LOC120568771
XR_005640773.1 lncRNA upstream 107015 19631497 ~ 19632872 (-) True LOC120568771
TU156643 lncRNA upstream 107016 19631498 ~ 19632869 (-) False LOC120568771
TU156632 lncRNA upstream 115044 19639526 ~ 19640657 (-) True G116180
XM_039816466.1 mRNA downstream 2962 19513543 ~ 19516574 (-) True bag1
XM_039816436.1 mRNA downstream 9970 19486691 ~ 19509566 (-) False myom1a
XM_039816433.1 mRNA downstream 9970 19486691 ~ 19509566 (-) False myom1a
XM_039816437.1 mRNA downstream 9972 19486691 ~ 19509564 (-) False myom1a
XM_039816434.1 mRNA downstream 9972 19486691 ~ 19509564 (-) True myom1a
XM_039816458.1 mRNA upstream 3681 19528163 ~ 19532230 (-) True oprk1
XM_039816452.1 mRNA upstream 18368 19542850 ~ 19573287 (-) False atp6v1h
XM_039816455.1 mRNA upstream 18368 19542850 ~ 19573273 (-) False atp6v1h
XM_039816454.1 mRNA upstream 18368 19542850 ~ 19572640 (-) True atp6v1h
XM_039816456.1 mRNA upstream 18368 19542850 ~ 19572020 (-) False atp6v1h
TU156578 other downstream 54156 19464700 ~ 19465380 (-) True G116138
TU156517 other downstream 296810 19221791 ~ 19222726 (-) True G116084
TU156358 other downstream 584059 18931974 ~ 18935477 (-) True LOC120568972
TU156342 other downstream 673259 18844905 ~ 18846277 (-) True G115941
TU156258 other downstream 800992 18716882 ~ 18718544 (-) True LOC120568909
TU156767 other upstream 269352 19793834 ~ 19795709 (-) False xcr1b.1
TU157096 other upstream 1483567 21008049 ~ 21010569 (-) False higd1a
TU157655 other upstream 2737516 22261998 ~ 22263498 (-) False G116969
TU157659 other upstream 2738641 22263123 ~ 22268559 (-) True G116969
TU158039 other upstream 3905884 23430366 ~ 23430992 (-) True G117259

Expression Profile