RNA id: XM_039816474.1


Basic Information

Item Value
RNA id XM_039816474.1
length 793
RNA type mRNA
GC content 0.61
exon number 3
gene id dusp28
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 3959592 ~ 3964053 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGCTCACCGTTTTGAGAGTGAACCTGATCAGCACTAGGACCCAGAGCGGGAGCTGTCGGAGTCCTTGCAGTAAATatagaagcagcagcagcggggTGTTGATCGGAGCAGTTTGGGGGTCACGAGCAGACCTGAACAGACCGGATCAGCCGGAACCGTCCCCGGTCTGCAGGCGCGAGCAGGAAGACCTTTTCCTCTGAAAACCCCGGAGACGGTTTATCTGCAAGGAGCCGCACGGCTGCACTTCCCCTTGCGAGTAAGGAAGCCCGCGAGGCTCAGTTCACCAGGATGCTGCAGCTGTGTAAAGTGACCCGCGCCCTGTTCATCAGTAACGCGCGCTCGGCCTGCAGCGACGAGCTGCTGCAGCGCGAGGCCGTGACGCTCTGCATCAACGTGTCCAAGCAGCAGCCGTTTCCCGCCGCCGCCGCCGTCTCCAAGCTGCAGATCCCCGTCTACGACGACCCCAACGAGGATCTGTACGCCCACTTCGACCGCGCCGCCGACGCCATCCAGAAGGAGGCGAACCGCGGCGGGCGCAGCGTCGTGTACTGCAAGAACGGGCGCAGCCGCTCGGCCACCGTCTGCATCGCCTACCTGATGAAACACCGCAGGCTGACGCTCGCCGAGGCGCTGCAGAAAGTGAAGACTGCTCGTCACGAGATCGATCCGAACCCTGGCTTCCTGTCTCAGCTGCAGAGATACGAGCAGGAGCTGAAGAAGAgacggagaggagagacagagagataggcagactgagaaacagacagagaggacagacagacagagagactg

Function

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0000188 inactivation of MAPK activity biological_process
GO:0017017 MAP kinase tyrosine/serine/threonine phosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150674 lncRNA upstream 2319 3950944 ~ 3957274 (+) True G111819
TU150565 lncRNA upstream 107559 3850107 ~ 3852034 (+) False LOC120568521
TU150579 lncRNA upstream 108718 3850107 ~ 3850875 (+) False LOC120568521
TU150647 lncRNA upstream 158895 3799802 ~ 3800698 (+) True G111792
TU150645 lncRNA upstream 163361 3795823 ~ 3796232 (+) False LOC120568336
TU150690 lncRNA downstream 37961 4002014 ~ 4005335 (+) False G111832
TU150691 lncRNA downstream 37961 4002014 ~ 4003733 (+) True G111832
TU150692 lncRNA downstream 43363 4007416 ~ 4010693 (+) False G111832
TU150705 lncRNA downstream 121049 4085102 ~ 4087986 (+) True G111844
TU150719 lncRNA downstream 126974 4091027 ~ 4139026 (+) True G111851
XM_039816709.1 mRNA upstream 10027 3936631 ~ 3949566 (+) True vcpip1
XM_039815756.1 mRNA upstream 134159 3815820 ~ 3825434 (+) True LOC120568332
XM_039816100.1 mRNA upstream 151903 3803898 ~ 3807690 (+) True LOC120568529
XM_039815753.1 mRNA upstream 243638 3715566 ~ 3715955 (+) True LOC120568326
XM_039816096.1 mRNA upstream 359021 3596415 ~ 3600572 (+) True LOC120568524
XM_039816102.1 mRNA downstream 22392 3986445 ~ 3992589 (+) True LOC120568531
XM_039816103.1 mRNA downstream 31564 3995617 ~ 3997859 (+) True LOC120568532
XM_039816306.1 mRNA downstream 87267 4051320 ~ 4065021 (+) True crfb16
XM_039816105.1 mRNA downstream 248071 4212124 ~ 4323581 (+) False tmeff1a
XM_039815669.1 mRNA downstream 373032 4337085 ~ 4349158 (+) True cavin4a
TU150599 other upstream 434544 3500679 ~ 3525049 (+) False LOC120568327
TU150598 other upstream 434544 3511653 ~ 3525049 (+) True LOC120568327
TU150236 other upstream 560410 3388094 ~ 3399183 (+) False LOC120567769
TU150165 other upstream 883692 3016958 ~ 3075901 (+) True G111494
TU150715 other downstream 124591 4088644 ~ 4137543 (+) True G111848
TU150718 other downstream 126455 4090508 ~ 4138933 (+) True G111850
TU150765 other downstream 301449 4265502 ~ 4326186 (+) True tmeff1a
TU150809 other downstream 534941 4498994 ~ 4539205 (+) False dnaaf11
TU150808 other downstream 563862 4527915 ~ 4529749 (+) False dnaaf11

Expression Profile