RNA id: XM_039816476.1


Basic Information

Item Value
RNA id XM_039816476.1
length 1419
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC120568778
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 34862052 ~ 34863627 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGTGCTTCAGACTCGCCCGCTTTTCGAGTCGCACACTGGTACAAACTTAGCTGATGTTTTAAAAGCGACCGTACAAGAGTGGGAGCTTGAAAGATCTGCTCATAGCATTGCTGTTGTTACAGACAACGCACGCAACATGATTGTGGCAGTGAGGGAAGCAGGGATGTCGCCTCATATTAAGTGTTTTGCACACACTTTGAATCTTGCTTCGCAAGCAGGATTGCATGTTCCCCGCGTCAGTCGCTTGCTTGGCCGTGTGAGGAAAGTCGTGGCTTTCTTTCACCGCAGTACCACAGCAACAGCTGTGCTCGCGGCAAAGCAAAATATGCTTGAGATCGCATCACACAAGCTCATCATGGATGTTGTAACAAGATGGAACAGCTCAATGGATATGCTGGAACGCTATCGTGAGCAACAATCTGCTATAACGGCAGCCCTCTTGAGCACAGAGGTGTGCAAAAATGCACGTCAACTCGATACTATGGATAGCGCTGACATCAGTGATGCAGAGGAAATCGTAAACCTTCTTAAACCGCTAAAAAAAGCCACCGCTGTCCTGTCTGATGAAAAGAGCCCCACGCTGTCACTCATTGTGCCCTTGAAAGCCATGATCGAACAGAGCATGACACCGGACGAGAAAGACTCCACAACTATTGCTAACATGAAGACGGCCATCCTGCAAAACCTCTCAAGCAGATTCACAGAGGAACAGGATTATCTGCTAGAGGGTACTGCCTTGGACCCCAGATTTCGGTCATTGCCCCACTTACTCCCTGAACAACGTGAAGAGGTTTTCCACCGGTTGAAGAACAAATCAAACCAGTTACAGCAGgCTGTCACTGTGAAGCAAACGAAGGAGGGAGGTGCCAGTGCTGGAGATCCCACTGATGCAGCAGATCAGAGAGATATAGCACACAGAGTTGAGCCAGAACAGCCACCTAGCAAAAAGACAGCACTTGAAGAGCTCTTTGGTGCAACTTTTTCTGAACCACAAGTCACCCAGTCCAAAAGTAGGATAGAAGTAGAGATTGAAATGTACAAAAAGGACACTTCTATTCCCCTCACTAGCTGTCCACTGAAATGGTGGAAAGAAAATGCTCAAATGTACCCACTTCTTTCACCTCTTGCAAAGGCTTACCTCACAGTTCCAGCAACTTCCGTTCCTAGCGAATGTGTTTTTTCTACAGCAAGGGATATTGTAAATGCACAAAGATCCCAGCTACTGCCAGAAAATGTAGATATGCTGGTTTTCTTGCAAAAAAACCTGTAAGTAAtcaaaaaaaaagctctttgTGTTGAAATTACTTGAACAGGACACTActtgtgtggtgttttttttttgttgcacttTTACTGCTTAAAGAAGTTATCTCTTGGGCTATCCTAATTCTAATTTCATGATACAAGCAGTTTTATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162108 lncRNA downstream 35289 34826520 ~ 34826763 (-) True G120379
TU162103 lncRNA downstream 42463 34809896 ~ 34819589 (-) True G120374
TU162100 lncRNA downstream 69287 34787208 ~ 34792765 (-) False LOC120568808
TU162091 lncRNA downstream 117394 34741217 ~ 34744658 (-) True G120365
TU162057 lncRNA downstream 228915 34632905 ~ 34633137 (-) True G120341
TU162123 lncRNA upstream 41530 34905157 ~ 34905380 (-) True G120394
TU162124 lncRNA upstream 53673 34917300 ~ 34917535 (-) True G120395
TU162147 lncRNA upstream 101518 34965145 ~ 34965538 (-) False G120416
TU162148 lncRNA upstream 101518 34965145 ~ 34965538 (-) True G120416
TU162152 lncRNA upstream 105515 34969142 ~ 34969564 (-) True G120420
XM_039814712.1 mRNA downstream 11403 34849309 ~ 34850649 (-) True LOC120567735
XM_039816668.1 mRNA downstream 27662 34827113 ~ 34834390 (-) True LOC120568916
XM_039816520.1 mRNA downstream 47925 34801856 ~ 34814127 (-) True LOC120568811
XM_039816519.1 mRNA downstream 69285 34787168 ~ 34792767 (-) True LOC120568808
XM_039816512.1 mRNA downstream 80046 34771789 ~ 34782006 (-) False LOC120568806
XM_039814671.1 mRNA upstream 8157 34871784 ~ 34873121 (-) True LOC120567702
XM_039814672.1 mRNA upstream 27274 34890901 ~ 34892250 (-) True LOC120567703
XM_039816720.1 mRNA upstream 60439 34924066 ~ 34925378 (-) True LOC120568955
XM_039814673.1 mRNA upstream 148725 35012352 ~ 35014245 (-) True LOC120567704
XM_039815867.1 mRNA upstream 195154 35058781 ~ 35069748 (-) True LOC120568374
unassigned_transcript_566 other downstream 93538 34768441 ~ 34768514 (-) True trnan-guu_9
TU161906 other downstream 458039 34400823 ~ 34404013 (-) False G120230
TU161838 other downstream 633002 34228626 ~ 34229050 (-) True G120168
unassigned_transcript_565 other downstream 676964 34185016 ~ 34185088 (-) True trnak-cuu_2
TU161606 other downstream 1202776 33654302 ~ 33659276 (-) True G119989
TU162119 other upstream 31952 34895579 ~ 34895913 (-) True G120390
TU162164 other upstream 148781 35012408 ~ 35014214 (-) False LOC120567704
TU162546 other upstream 1847583 36711210 ~ 36737250 (-) False LOC120567714
unassigned_transcript_582 other upstream 2136190 36999817 ~ 36999899 (-) True trnal-uaa_10
unassigned_transcript_583 other upstream 2140333 37003960 ~ 37004042 (-) True trnal-caa_5

Expression Profile