RNA id: XM_039816484.1


Basic Information

Item Value
RNA id XM_039816484.1
length 1250
RNA type mRNA
GC content 0.47
exon number 6
gene id LOC120568781
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 13232096 ~ 13236247 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTAGCACCGAGAGGGTGGAGCTAAACATGAGGAGTTAGCCTGAACTTGTCCTCCTGCttctttgttatgtttttatatcgGGATCGGGAAGTAAGGCCGAAATGGTTGGCGAGGAGCTGGCGGTACGTCTCAACGACAAGGAGTATAAAAACTGGCTGAAAGCTGGACGGTGTCTTCTCATACTGAAGGATGGCCTGCATCCCTTCATAACCGACCACGTGAGAGCTTTCCACCGAGATCTGCTTAATCAAAACACTCTGCTACGGAAACCGTGTGTGACTTCTTGCAAACCCAGAGGGAATAGGCTTTCCTCAGCATGCAGGGTGTGTTCCGAGTGGCAGACAGTGATCCTAAAACACCACAGACAGCCAGATTCCACAGTGAACTGGGACAACTGTTTCCCTCCCAACTGGAGAACAGACCACTGGGAACTGGCCAAGgcctacatgccaCGGGGTCAGGGGAAGGTCAAGGGGGCAGATCAATGCGATGCCTCGGCTCTGCTCAACCTAATCAACTACTGTGATTGTTTCTGCTCTGTGGATCCAAAATTTGTGAGAGAGGTGATCCGGTTCAGGAACGAGTTGATGCACTCTTATGAGTTCCGTGTGACGGATGAATGGATGAGGCAATACCAGACCACTGTGAAAAAGCTTGTGCGGCAGTTCAGACACGTACCACAGATGGCAAAAGTTGGCCAACAGATCGAGGAGATGCTCAGCGTTGACTTGTCAATATGTGTCTCTGGTTTGGACCAAATGGATTCTACTACCCTGTATGGAATAGAGTGTGATTCTGTCAGCCAATGGGAGGCCAGCGCTGACTTAATCTGCCAATGGGAGGCTGAGTTGCTACAAGAGAGTCTGCAGGAGTTACTACATGCTGCTGATGATGATACAAAGACACCGGACACTGAGCAGCTGAAGAGGCTGGGTGGTTTCCTGCAGACCAACAGAGACCTGAGTGAGAGGTTTTCTGAAGAGCTCCGAACCATCAACTCACTAGAGGCCGGAGAATAAACAggagaaaatggtgaaaaagaCAACAAGGAGCATATTGCGCATGATGTCTTTATATTTACTATCTGagttccttgtatgtgttaaaaaatgtacttggcaataaaaaaaaactttctgattctgaaataaGTCAAAGTCAGAATTGAAGCAGATCAAGGGATTTGTGACAGATTGTGCAcgtgtatagtatgtcattgaaaatgtaaataaaaaatctgaCAAAACCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154019 lncRNA downstream 8231 13197745 ~ 13223865 (-) False G114183
TU154021 lncRNA downstream 8231 13219277 ~ 13223865 (-) True G114183
TU154011 lncRNA downstream 54345 13176803 ~ 13177751 (-) True G114177
TU153994 lncRNA downstream 114646 13114645 ~ 13117450 (-) False G114166
TU154040 lncRNA upstream 44686 13280931 ~ 13286164 (-) True G114196
TU154045 lncRNA upstream 50406 13286651 ~ 13287220 (-) True G114199
TU154049 lncRNA upstream 51937 13288182 ~ 13288993 (-) True G114202
TU154070 lncRNA upstream 158216 13394461 ~ 13406160 (-) True G114215
TU154071 lncRNA upstream 158216 13394461 ~ 13396368 (-) False G114215
XM_039814515.1 mRNA downstream 1192 13224897 ~ 13230904 (-) True LOC120567607
XM_039814516.1 mRNA downstream 1226 13224897 ~ 13230870 (-) False LOC120567607
XM_039816334.1 mRNA downstream 14026 13214880 ~ 13218070 (-) True LOC120568677
XM_039816356.1 mRNA upstream 53113 13289358 ~ 13310084 (-) True sugt1
XM_039816354.1 mRNA upstream 53113 13289358 ~ 13310080 (-) False sugt1
XM_039816355.1 mRNA upstream 53113 13289358 ~ 13310079 (-) False sugt1
XM_039815493.1 mRNA upstream 75556 13311801 ~ 13318339 (-) True LOC120568165
XM_039815495.1 mRNA upstream 75556 13311801 ~ 13317699 (-) False LOC120568165
TU153973 other downstream 143533 13084561 ~ 13088563 (-) True G114152
XR_005640810.1 other downstream 463471 12760915 ~ 12768625 (-) False LOC120568934
TU153584 other downstream 629187 12601180 ~ 12602909 (-) False nedd8l
TU153382 other downstream 1013829 12218062 ~ 12218267 (-) True G113805
unassigned_transcript_557 other downstream 2343144 10887089 ~ 10888952 (-) True LOC120567758
TU154602 other upstream 1377368 14613613 ~ 14615772 (-) False LOC120568687
TU154687 other upstream 1559673 14795918 ~ 14797044 (-) True G114680
XR_005640598.1 other upstream 2053941 15290186 ~ 15304610 (-) False mfsd8l2
XR_005640597.1 other upstream 2053941 15290186 ~ 15304610 (-) False mfsd8l2
XR_005640842.1 other upstream 2174917 15411162 ~ 15411347 (-) True LOC120569139

Expression Profile