RNA id: XM_039816486.1


Basic Information

Item Value
RNA id XM_039816486.1
length 4044
RNA type mRNA
GC content 0.54
exon number 3
gene id LOC120568782
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 13274162 ~ 13278429 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGGTGCCAAGTTTCTCCGCACAGTCCAGGAATCTCTAAACAGGGTTTAGAGGTCTTTCAGAAGTCCCTCTTTCCCCCCATCTCAAAGCCCGGATTGGCCACAGTGCGGCTCATTTGCATGGCTCGCCGTATAAACCCTCCTGCAGACACTGCAGCCCTCTTGCGCTGAAAGAGCAGCACACCtccagtagagagagagagagagagagagagagagggagagagagcggagcGCATCCAGAGTGCGCATTGAAAGACATATGGAATATTTATTACTGGctttataaaaagaataaacaacCCCGGAGAGTCGAGGAGAGCGGGGAAGGAATAGCTTTTTGTAGGTTCGttttgttttaactttaaaTCGGACTTAGTGCGGGCAGTTTGCTGAATTTCAGATTATTTCGGATTGAAGGTGTCAAGATGGGAGAAATAGGGTGGAACGGGCTGTTGGTGCTAGCGTGCGTCTCTTGGGCAAGCCTGGCTGCTGTCACACAAGGAAAGACGGTGAAATATCAGACATTCGAGGAAGACGCACCAGGGACAGTGATTGGAAACTTGGCCAAGGACATCTCCTCCACTGCCTCTTCCTCGGGGGGCTCCAGGACCAATTTCAGGATGATGAAACAGTTCAACTCCTCTTTCATCCGGCTGAGGGAGAGCGACGGGCAGCTGACCATCGGAGAGAGGATAGACAGGGAGCGGACCTGCAAACACATGCTGCAATGCCTCATCGCTTTTGACGTGGTCAGCTTCTCCAAAGAGCAGTTCAAACTCATCCACGTCGAGGTGGAGGTCAAGGACATCAACGACAACTCCCCCGAGTTCCCCCGGAAAGAGTCGAGTCTGGAGATCTCCGAGAACACAGCGGTGGGCACGCGGATACCGCTGGACTTTGCCGTGGATGAGGATGTTGGGGCGAACTACATCCAAAGCTACCAGATCTCCGTCAACAGCCACTTTTCAATCGACGTGCTCAGCAGGGCCGACGGGGTTAAATATGCGGAGCTGGTGCTCATGAAGGAGCTGGACCGGGAGACGCAGGCTTCTTACGCGCTGGAGCTGGTCGCTATGGACGGTGGCAACCCGTCCCGCACCGGAACAACGCGCATCAACGTCAAGGTGAAAGACTATAACGACAACAGCCCGGTGTTCGACAGGAACAGCTTCTCCGTGGACCTGCCCGAGGACGCACCGGTGGGCTTTCTCTTGCTGGACCTGAACGCGGAGGATCCAGACGAGGGGCTGAACGGCGAGGTGGTGTACGGCTTCGGTAACCAGGTGCCCACAGAAATACGGCAACTCTTCAGAGTGGACAGGAAGACCGGACGGCTCACCGTCGAGAGCGCGATTGACTTTGAAAGTAAGAACACGTACGAGTTTGACGTTCAGGCAACCGACCTGGGTCCGAACCCGAGCCCGGCCATCTGCAAAATTGTAGTGCAGGTGCAGGATGTTAACGACAACGCACCGGAGATCTCCATCACTCCTATGACGTCCATAACGGCGGGGATAGCGTACATTACCGAGGCGGCGGCCAGAGAGAGTTTCGTGGCTCTGGTCAGCACCTCGGACAGAGACTCCGGCGCTAACGGGCAGGTGCACTGCACGCTCTACGGACACGACCACTTTAGACTGCAGCAGGCGTACGAGGACAGCTTCATGATTGTGAGTACCAGCCCGTTAGACCGGGAGAAAATCCCCGAATATAACCTCACAGTAGTGGCGGAGGATCTGGGCTCCCCTCCCTTCAGGACCATCACTCAGTACACAATCAGACTGACTGACGAGAACGACAACGCTCCGGTGTTCAGTAAACCGGTGTATGAAGTGGCCGTGGTGGAGAACAACGCACCTGGCGCATACATCACCACTGTGGTGGCGCGGGACATGGACATGGGGTCAAACGGGAAGGTCAGCTACAAACTGGCAGACACATATTTCATGGGCTCCCCCATTTCCACCTTCGTGTCGCTGGACCCCGCCAGCGGGTCGCTTTACGCGCTCCGGAGCTTCAACTACGAGATGATGAAACAGCTGGAGCTCCGTATCACGGCCAGCGACGGCGGCTCCCCGCCTCTGTCCGGCAGCGCTAACGTCTACGTGAGGATAGTGGACCAGAATGATAACACACCGGTCATCACTCAGCCGCCTCTCAATAACGGCTCCGCTGAAGTCCTCCTGCCCCGGGACGCACCGAGCGGCTACGTCATCACCCGGGTGGAAGCGCGGGATGCGGACGAGGGCGTGAACGCAGAGGTGTCCTACGGGCTGGCCACCGGTGAGCCCTCCGTGTTCTCTGTTAACAAAGCCACGGGGGAGATCTACCTCAACCAGGTGCTCAGCCATGACGTGGACGAAACTCTGAGCGTGACCGTGACGGTGAGCGACAACGGGAGGCCCGCGCTCACCTCCACCGCCACGCTCCACTTCCTCATCATCGCGGGCTCCCCGCCGAGCGACAGGACAGTGTACCAGTCGGGCGGCGGGGACGAGGTGCACGCGCAGTGGGACCTGTCCGTGGTGATTATCGTTGTCCTCGCGGGGAGCTGCACGCTCCTGCTGCTCGCCATCATCCTCATCGCCACCACCTGCAACCGGCGCAAGCGGGACAAAAGCGGAGAAGACAGCGACTCGTACGGGGAGAAGGGCACGCTCGAGCGGGGCAGGAACCACGTGGGGGACAACCCGCTTCTGCCACTCCACGGGGCCGGGGGAGGAGCGGGCTTTGAGGGACACTCCTATAGCAGCCAGCCCGGTGGGTTCACCTCGGCTCACCCCGGGGGCAGCGACATGTGCTCGGCCTCAGAGGACGGCAGCGAAGTGCCCTGTGTGTATGACTCAGACAGCAACAGTAAGCCTAGAGGGAACAAACACGAGGGCTACTCCACTCTGCCCGGCTATGGGAACGCCAAAGAGGCTGTGAGGCCCATCACTATCTGGAAGGGGAACTCTTACACCACCATCTCTGCCAGGGACCCGGCCTTCAGTGGCAAAGACAGTGGCAAGGGAGACAGTGACTTCAatgacagtgacagtgatgtcAGTGGGGACACTGGCCTGAAGAAAGATGGGGCAGTGGTTCCTCCCATGGGTGGCCAAAATGCTCTGTGGGCTTGCACCAGTGAATGTAAGGTCCTGGGTCACTCAGATCGCTGCTGGAGCCCCTCGGCAGTAAGAGCCAACGCAGCGCCCTCTCCAGCCCCCACCCTCTCCTCTTTCAGCAGCCTCTCCAAGACAGCCTCCCTGCCCCGGGACCCCCACCGCCGGGACAACTACTACCAGGCGCACATCCCCAAAACCGTGGGTCTACAGAGCGTGTACGAGAAGGTGCTGCACAAAGAGTACGACTACGTTCTGGTCACCCCATCCAGGCCTGTGCGGGTGCAGGAGATCAGTGATATAACCATCCCTGTTTACACCCCCACCCCAACACACTGCCCCAACAATGACGTCTAAAACAGACattgcacaaacacaaacacacacacacacacacacacacacacacacacacacacaccacacacacaaatctaagCTCACTCTCAAAGAAATGTATAGTGTATTCAAAGTTTTAATTTATGATCCATTGACAATGAGAATACTGTAACGTTTTGAAGTTATTCGTTGCTGTGGAGAGTGCATATATAAGTTTATATCCTAATATTcgtgtgtttctgttttattgtaaaAGCCACATTTAATGGccattcaatcaatcaattgatacattttgttttgttgacatgaagtgTATCATATGCAAGTTTTGTACATGcagagattttatttttttataaaagtaatAATTAAGCAAAGATATGTACATATAAATTGTAATTATTGATCTTTAAGCACGACTATTTAAAATGGCCCCAGAAACTGTGCTGTTGGATGGCCGGTGACCCACAATGTATCAAGTTGATAACGATGTATGATGTTATTTGAATGCAATAATAAGTAATTgtacagaatgttttttttatcatcacaaTATTCTGAGAGAAAATAAACTTTGAAATAATGTTCTGAACATGG

Function

GO: NA

KEGG:

id description
K16499 PCDHD2; protocadherin delta 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640785.1 lncRNA upstream 19577 13250751 ~ 13254585 (+) True LOC120568783
TU153804 lncRNA upstream 67139 13204825 ~ 13207023 (+) True G114037
TU153802 lncRNA upstream 73416 13199768 ~ 13200746 (+) True G114035
TU153799 lncRNA upstream 75428 13196261 ~ 13198734 (+) True G114033
TU153788 lncRNA upstream 87799 13183339 ~ 13186363 (+) False si:ch73-71c20.5
TU153826 lncRNA downstream 8221 13286650 ~ 13287219 (+) True G114055
TU153797 lncRNA downstream 9764 13288193 ~ 13289003 (+) True G114032
TU153838 lncRNA downstream 75825 13354254 ~ 13356050 (+) True G114063
TU153872 lncRNA downstream 191082 13469511 ~ 13472357 (+) True G114094
TU153873 lncRNA downstream 194585 13473014 ~ 13473251 (+) True G114095
XM_039816336.1 mRNA upstream 50308 13213316 ~ 13223854 (+) False LOC120568679
XM_039816335.1 mRNA upstream 50308 13216960 ~ 13223854 (+) True LOC120568679
XM_039816338.1 mRNA upstream 50308 13217658 ~ 13223854 (+) False LOC120568679
XM_039816320.1 mRNA upstream 87798 13183284 ~ 13186364 (+) True si:ch73-71c20.5
XM_039816866.1 mRNA upstream 90955 13176825 ~ 13183207 (+) True mcm6
XM_039816353.1 mRNA downstream 647 13279076 ~ 13286178 (+) True LOC120568688
XM_039814776.1 mRNA downstream 110792 13389221 ~ 13392603 (+) True LOC120567765
XM_039814775.1 mRNA downstream 110799 13389228 ~ 13392603 (+) False LOC120567765
XM_039816255.1 mRNA downstream 116059 13394488 ~ 13410455 (+) True LOC120568628
XM_039816256.1 mRNA downstream 116062 13394491 ~ 13410455 (+) False LOC120568628
unassigned_transcript_558 other upstream 55952 13218139 ~ 13218210 (+) True trnae-cuc_17
TU153770 other upstream 148699 13123055 ~ 13125463 (+) False ndufb3
TU153768 other upstream 156806 13114649 ~ 13117356 (+) False rpl37a
TU153727 other upstream 298525 12929215 ~ 12975637 (+) True G113979
TU153737 other upstream 316806 12952580 ~ 12957356 (+) False LOC120569010
TU154336 other downstream 1008721 14287150 ~ 14295268 (+) False LOC120568245
TU154337 other downstream 1009926 14288355 ~ 14290960 (+) False LOC120568245
TU154338 other downstream 1011108 14289537 ~ 14295993 (+) False LOC120568245
TU154339 other downstream 1014331 14292760 ~ 14295268 (+) False LOC120568245
TU154847 other downstream 1873367 15151796 ~ 15157199 (+) True G114789

Expression Profile