RNA id: XM_039816489.1


Basic Information

Item Value
RNA id XM_039816489.1
length 4792
RNA type mRNA
GC content 0.49
exon number 22
gene id LOC120568786
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 13421548 ~ 13437449 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gccatcCCCCATCGCGCTGCTAGGTGCGCGCCAGCCTCGCGATAGCCTCGCCTACTAGAATCAAAGCTCCGTTCGCGAACTGGATGCTGACAGGCGCGCGGGGCGGTCATCATGCAAAGGTTACATTGGATCCGTTTCAGCGAGTCTCTAAAGAAGCCGCTCCTCCGCAGGACCCGCACGGGTCACAAAATGCGAGACGTCTAGCAACACAAAAACGATAGGACTCAACGTTTCCTGGCCTGTTTGGCTACAGCAGGTGTCATCGATGGACGCAAGTTTGGGATTTCCACGAACGGCAGTGTGTACGCTGGCTCCACTCGGCGGTAAAGTGGCTTCATGAGTGTCCAAAGTAACAGTGGAAGTGGTGGTGGAAGTTTGGAGGCGACGCCATCTTGGTCGCAGCTCTCCTCGTCCCCAACGATTTCTCAACAACATATAACGGCGACCGCAAAGAGCAAGGAAGGCCCCATGGAGGAGCTGCACAGCCTGGACCCCAGGAGACAGGAGCTGCTGGAGGCCAGGTTCACAGGAGCTGTCACTGGCAACACAGGAGGCAGCACTGGGAGCACCAGTGGAGGTGCTAAGGGTCTGGCCAATGAGTCCTCTAACCACAGCTATGGCAGTCTGGGCTCATCTAGCGACAAGGAGTCCGagaACTCTGATTTGAAAAGAGGGAGCTCCCCTGCCTACTCAACCCCGGAGAAGAAGCACTCTGAATCGTCCAGAGGGAGGAAAAGGAAAGCTGAAACCTATTCAGAGAGTAGTCAAGGTAAGACTTCCACACGTGGGCCCAAGATCAGCGACTACTTTGACTTCCAGGGTGGAAATGGTTCCAGTCCAGTCAGAGGCCTCCCATCGACTCGTCGCTCTCCACAGAACTCGCACTCTGCCCCAGGCTCAATCGTCCGGCAGAATAGCTCCTCTCCTACAAGTCTGTGTTTTGGGGAGCACAATCCTAAAGCTTCCTCCAGCAAGTGTGTCCAGACGGAGTTAACAGGCCTGAAACTTGCTGCTCTGGAGAGCAATAAGAGTCTGGacctggaaaaaaaagaagggcgAATAGATGACCTGCTCAGGGCTAACTGTGACCTGCGGAGACAGATAGATGAACAGCAAAAACTGCTGGAGAAATACAAGGAGAGGCTCAATAAGTGCATCACTATGAGCAAGAAACTGCTTGTAGAGAAGAGCACCCAGGAGAAGCAGTCGTGTCGTGAGAAGAGCATGCAGGACCGTCTCCGTCTCGGTCACTTCACCACTGTCAGACACGGAGCGTCCTACACGGAGCAGTGGACGGACGGATACGCATTCCAGAACCTGATCAAGCAACAGGAGGGCATCAACCAGCAGAGGGAGGAGATAGAGCGACAGAGGAAGCTGCTGGCCAAGAGGAAGCCTCCAAACCCTgcatctccctccctctcggTGGCCTCCACCTCTGAACCCAAGCAGCGCAAAACTAAGGTGGTCAACGGCAACGACTCTGACCCCTTCCTCAAGCCCTCCTTGCCCCAACTACTGACCCTCGCTGAGTACCACGAGCAGGAAGAGATCTTCAAGCTTCGCCTTGGACATCTGAAGAAGGAGGAAGCTGAGATCCAGGCGGAGCTGGAGCGGTTGGAGCGGGTGAGGAACCTCCATATCAGAGAGCTGAAGAGGATAAACAACGAGGACAGCTCGGCttttaaagaccATCCTACCCTGAATGAGAGGTACCTGCTGCTGCACTTGCTGGGCAGGGGCGGCTTCAGTGAAGTCTATAAGGCTTTTGACCTGTTTGAGCAGCGATACGCAGCTGTTAAAATCCACCAACTCAACAAGAactggagagaggagaaaaaggagaaCTACCACAAGCATGCATGCAGGGAGTACCGGATACACAAGCAGCTGGACCATCCCAGAATAGTCAAACTTTATGACTATTTCTCCCTGGATACTGACACGTTCTGTACAGTTCTGGAGTTCTGCGAAGGCAACGACCTGGACTTCTACCTGAAGCAAAACAAGCTGATGTCGGAGAAGGAGGCACGCTCCATTGTCATGCAGATTGTCAGCGCCCTGCGCTACCTCAATGAAATCAAACCCCCCATCATCCACTACGACCTCAAACCGGGTAACATCTTATTGGTCGATGGTACTGCGTGCGGAGAAATCAAAATCACAGACTTTGGCCTGTCAAAGATTATGGATGATGATAACTATGGTGTGGACGGGATGGACCTCACATCACAGGGAGCAGGCACCTACTGGTACCTTCCTCCAGAGTGTTTTGTAGTGGGGAAGGAGCCACCTAAAATCTCCAACAAGGTTGACGTCTGGTCTGTGGGAGTGATCTTCTTCCAGTGCCTCTACGGACGCAAGccgTTTGGTCACAACCAGTCACAACAGGATATTCTCCAGGAAAACACCATCCTCAAAGCCACAGAGGTCCAGTTCCCTGCCAAACCACAGGCTAGCACAGAGGCCAAGGCGTTTATCCGGCGCTGTCTGGCCTACCGCAAGGAGGACCGGTTCGATGTTCACCAACTGTGCTCGGACTCCTACCTCCTCCCTCACATGAGACGTTCAAACTCCTCCGGCTCCCTGCAGCCCTCCgcctcatctctctctaccTACTGACTGGCTCTCTCAACGTAACTGACAGGACCCTCTGGCCAGTCTCAAGGCAGGATTGTTGGAATCTGAGGATAATGGATCTagtggatctttttttttttttacctgagcTGTTCCCAAATGGTCGAATAAGCAACAGAGTGGAATTAAATGTAGAGCATGAGATGGAAAAGAGTTAAGAAGTACAAGTGGGATACTCCCCTTTGCATATGTTGTACAGAGTTGTGCCCCTGAACTCAACAGCGTGAGATGGGGGGAAAGAACATAACTGGAAAatggaaaggaaagagagaggggcaaGAATAGAAAGACAGACTCGGCATTGTTTGGAGCCAGAAAAGAAAACGTTGAATCTAGAAGATTTCTTTGTGGACTTAATTAAATAAACCCCTTAGGTGACATTTCAACAGCTGTAGGAGCGCCTAGATGCCCTGTCCACCTCGTTTAGCCCATCATAATACACTTCACAAGATGGCTTAGAATTTCTTCAGCATGAAGCCACCGTTCTAGATGTTCTCTTGTTGCTGATGTGAGGGTGGCGTTGACCAGCTGGAGATCAGAAGACAGGGGTGAacaggtgtgtgttttgcagaGACGGTATGAGTGTCTGTGTATTAAATATGGGCCACCTGCTCATGTATACTCTGCAATCCGTTGTTATGAGGTACAGAGCGATGGTGTCATTGAATTTACCCTTGAAGTCCCTCTGCACATGATGGGGGTTCACTTAAATGTGATGTAACTTTGATGGGAAGcgactaaaacaaaaaaaaatagttccaGATTAAATTTCTGGGGTTGATTTGCACTTCCGGTCCAGATAATGCTAATCTGGTTTTATAAATTTGGCATGAAGTACTACAGCGTGGGCTTGTTCTGAACTTATCACTAGCCCAATCCTCAGTTCACATTCTCCTTCAGTTGCAAAGCAATTCAGATCTACTACTGGGTTTGCAGGAAGTGGATCTGTGAATCAGTCTTAAATCCATTTTCGTTGTTCAGATGAGAGTCGAAATGTTTCAAACGGCAGAGTATTACAGTAACATGTTGTCATTGATGTGCTCAACCTGCCAGAAGAGAGTTGGATTGAACTGAGGGACTTGATCAGCTGTTGGGACACAGAATTTAGTGTACATTTCATGTGCAGGAGACATTATTCACTAGCAAATACATAATAATGAGGCTTATCCTTGCTTCCCAGTGTCTCACTTTGCTCCGTTTCTTTGTGTTTCCTCCTGAAAGCTGTTCTCAGTTTGCTGCTATAAATGTTGCTTTTAGTTTGTAACGTGCGAATGGTTTTCACCTCGCATATGTGCATACTTGAACTGTGTTGAgaggaaccacacacacacacacacacacacacacacaaatgttgtTCACATGGGGTTTTTGTTTACTTTCATGTACAAGTTCAACAGACATTATATTGAGCGAAGTCCCAGTATGCTGTGTAGTGAGAGTTGACCACACCTGTTCATGCCAGTAAAACTGGGCACGCTCCAGTTTGGCTGTGTTGCAGCATGATTCACTGCAGCTAGAAAGCAAATGGATATATCCAAATGTTGTTGTCCTGTAAATAAAACACCAACCTGTACGTTGTTGTGGCATTATAAAAACCCTCTCACATACAAGCTAACCTGAACTCGCCCGCGACTAGACGTCAGATAAAAAGACAAGTGGGGGCAGTTCACAGCAAGTTGTGGTGTCTTATCTTCTCGCTGCACTCTTGCCTGCATTAAgtcttataatttttttttatgtgcaagCCGTTAGGTGAACAAAAAACCCAAACAGTGATGTACTTTCAGTAACATGCAGGAAGTACCTGCTCACGGTTTACTGCTCCCATATGAGAGCAAGTGATGAAGTGCAATGGAACAGGTAAAGTGTCCAGTTTGATAAATTGTAATTGTACCTACTTGAGTGCAGTAAGGCATAAAACAAACTTCTCCCCTTCTGTCtaaattttgtatttgcttcTACTTGACAAAAGAACAGTAGAAAATGGGTGCTAGCATCAACTGCAAATACCACGTGATTAATGAGAGCCGTGTGTAGACAGATGCAAGTAAAGACGTTGGCGAGCTGCGTGTCAGATTACATTAGCGATGGGGTTGCGACGCTAGGCCATGTCACTCATATGCAATAAAAATTGCCTTACAAGTCTTAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08864 TLK; tousled-like kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154072 lncRNA downstream 14718 13405234 ~ 13406830 (-) False G114215
TU154070 lncRNA downstream 15388 13394461 ~ 13406160 (-) True G114215
TU154071 lncRNA downstream 25180 13394461 ~ 13396368 (-) False G114215
TU154049 lncRNA downstream 132555 13288182 ~ 13288993 (-) True G114202
TU154045 lncRNA downstream 134328 13286651 ~ 13287220 (-) True G114199
TU154064 lncRNA upstream 32084 13469531 ~ 13472351 (-) False dis3l2
TU154088 lncRNA upstream 95691 13533138 ~ 13549466 (-) True LOC120568710
XR_005640752.1 lncRNA upstream 99027 13536474 ~ 13549442 (-) False LOC120568710
TU154108 lncRNA upstream 119157 13556604 ~ 13564803 (-) True G114247
TU154127 lncRNA upstream 185456 13622903 ~ 13625479 (-) True G114256
XM_039815498.1 mRNA downstream 59506 13354229 ~ 13362042 (-) True LOC120568167
XM_039815497.1 mRNA downstream 88543 13326841 ~ 13333005 (-) False ednrba
XM_039815496.1 mRNA downstream 88543 13326841 ~ 13333005 (-) True ednrba
XM_039815493.1 mRNA downstream 103209 13311801 ~ 13318339 (-) True LOC120568165
XM_039816179.1 mRNA upstream 3242 13440689 ~ 13465710 (-) True LOC120568580
XM_039816180.1 mRNA upstream 32207 13469654 ~ 13482225 (-) True dis3l2
XM_039815730.1 mRNA upstream 131902 13569349 ~ 13575574 (-) True si:ch211-252f13.5
XM_039816531.1 mRNA upstream 157731 13595178 ~ 13619698 (-) False LOC120568814
XM_039816529.1 mRNA upstream 157731 13595178 ~ 13619698 (-) False LOC120568814
TU153973 other downstream 332985 13084561 ~ 13088563 (-) True G114152
XR_005640810.1 other downstream 652923 12760915 ~ 12768625 (-) False LOC120568934
TU153584 other downstream 818639 12601180 ~ 12602909 (-) False nedd8l
TU153382 other downstream 1203281 12218062 ~ 12218267 (-) True G113805
unassigned_transcript_557 other downstream 2532596 10887089 ~ 10888952 (-) True LOC120567758
TU154602 other upstream 1176166 14613613 ~ 14615772 (-) False LOC120568687
TU154687 other upstream 1358471 14795918 ~ 14797044 (-) True G114680
XR_005640598.1 other upstream 1852739 15290186 ~ 15304610 (-) False mfsd8l2
XR_005640597.1 other upstream 1852739 15290186 ~ 15304610 (-) False mfsd8l2
XR_005640842.1 other upstream 1973715 15411162 ~ 15411347 (-) True LOC120569139

Expression Profile