RNA id: XM_039816506.1


Basic Information

Item Value
RNA id XM_039816506.1
length 1329
RNA type mRNA
GC content 0.51
exon number 1
gene id LOC120568799
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 33408688 ~ 33410016 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCAAAAAGACAGAGGAAATATTTCTGAACTGACCACTTTTTCCTTTTACGCACGAGAGGAGCATGAGCTTCTTGGGGAGGTGACTTGATTTAAAGTaggactggtgtgtgtgtgtgtgttttattaatgaatGTGTCAGTTCCTGAGATGGCCAAACCTTTAGATCACATAAAAAGACCCATGAATGCTTTCATGGTGTGGTCCAGAGGCCAGAGGAGGAAAATGGCCCAGGAAAACCCAAAGATGCACAACTCTGAAATCAGCAAGAGGCTCGGCGCGGAGTGGAAGCTGCTGTCCGACTCCGAGAAACGGCCGTACATCGACGAGGCCAAGAGGCTGCGGGCTCAGCACATGAAGGAGCACCCGGACTACAAGTACAGACCACGGCGCAAAGCCAAGAGTCTCCTGAAGAGGGACCGTTTCGTTTTCCCGCTGCCGTCTGTACTTGGGGACGCGGCGGAGCATTTGAAGGGATTCCCCATGGACTCCTTTCTTGTCCCCGGGGATAAAGCCAGAGCTTTCCTCGCTCCCgtctcctccccctcttccttCTCGCTGCTGGAGCCGGTGGCGCAATTCAGCACCGGAGCTGTCCAGCGGATGGCGGAGATACCGCACGCTCTGGCCGCCGGCGCTTTGCCCTACAGCGCACACACGTTCGGATACCAGACTGGAGGGATTGGGGGTCTGGCTTGCCACGGACagcacacccacacccacccccacccccacccgtCCTCCAGCCCGGGGTACGTGGTGCCGTGTAACTGTAGCGCCTGGTctgctgccagtttacagcctCAGTTAGCCTATATTCTCTTCCCTGGAGGGATGGCCAAGAACGGCATGGACTCGTACACTTCCCCTAGCTCCAGTGTGTGACACGCTGGATACACTTGAAGCTGCGCGGTCCCAACGGGGGGAAAGTTTGCGCGCACAGGATCTCCCCCTCCCCGTAacatgacaaaagaaaaaagaactgGGCTACAACACATGTTTTCATCCTACATAACATCACAGCAAAACTGAATATTAGGCTAGTGTTTCTGCagatattatatacattttaaaatgccataaatGGCTGCTTACAGCTGATTAGcaacatcattttttttccaacccAGGCTATCTTACTTTACTTCTACTTAACTTTTTATTTCTTGCACTGTAGCTATGTTACATTATAGACTTATTGACCATCTTTTTTCTTACTCTCATTTGTACCTTTAATCTGACTGTGAGCCACAGCAATTTAACAATTTCCCTGAGGGGGATCCATAAAGTATTCTGATTGTGATTGCCTGCTGCTGAGCAGTCTTACTCGGT

Function

GO: NA

KEGG:

id description
K09267 SOX1S; transcription factor SOX1/3/14/21 (SOX group B)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161341 lncRNA upstream 118108 33290330 ~ 33290580 (+) True G119767
TU161328 lncRNA upstream 139486 33268370 ~ 33269202 (+) True G119763
TU161305 lncRNA upstream 215489 33192587 ~ 33193199 (+) True G119744
TU161290 lncRNA upstream 222796 33181456 ~ 33185892 (+) True G119733
XR_005640730.1 lncRNA upstream 242590 33163933 ~ 33166098 (+) False LOC120568463
TU161485 lncRNA downstream 103995 33514011 ~ 33515423 (+) False pkn2a
TU161502 lncRNA downstream 128156 33538172 ~ 33562071 (+) True G119901
TU161526 lncRNA downstream 187857 33597873 ~ 33598657 (+) True G119922
TU161561 lncRNA downstream 401060 33811076 ~ 33851937 (+) True gng12a
XR_005640825.1 lncRNA downstream 451422 33861438 ~ 33866996 (+) True LOC120569016
XM_039815127.1 mRNA upstream 43366 33356507 ~ 33365322 (+) False stk25b
XM_039815125.1 mRNA upstream 43366 33356508 ~ 33365322 (+) True stk25b
XM_039815269.1 mRNA upstream 109902 33292188 ~ 33298786 (+) True atp1b3a
XM_039815267.1 mRNA upstream 123222 33273117 ~ 33285466 (+) True gk5
XM_039816011.1 mRNA upstream 228100 33126780 ~ 33180588 (+) True LOC120568455
XM_039816488.1 mRNA downstream 4059 33414075 ~ 33419694 (+) True cldn18
XM_039815452.1 mRNA downstream 24186 33434202 ~ 33473617 (+) True hs2st1a
XM_039815451.1 mRNA downstream 24186 33434202 ~ 33473617 (+) False hs2st1a
XM_039814669.1 mRNA downstream 67320 33477336 ~ 33515424 (+) True pkn2a
XM_039815355.1 mRNA downstream 123058 33533074 ~ 33549879 (+) False lrrc8da
unassigned_transcript_564 other upstream 6366 33402251 ~ 33402322 (+) True trnap-ugg_4
TU161343 other upstream 100824 33304822 ~ 33307864 (+) True G119769
TU161294 other upstream 242588 33163916 ~ 33166100 (+) True LOC120568463
XR_005640727.1 other upstream 361554 32989790 ~ 33047134 (+) False tep1
TU161084 other upstream 627217 32780988 ~ 32781471 (+) True G119585
TU161565 other downstream 448526 33858542 ~ 33859847 (+) True G119957
TU161681 other downstream 545167 33955183 ~ 33957504 (+) True LOC120568585
TU161769 other downstream 754087 34164103 ~ 34165846 (+) False mrpl34
TU161873 other downstream 907132 34317148 ~ 34317766 (+) True G120200
TU161901 other downstream 990785 34400801 ~ 34404001 (+) False rps28

Expression Profile