RNA id: XM_039816511.1


Basic Information

Item Value
RNA id XM_039816511.1
length 2017
RNA type mRNA
GC content 0.46
exon number 11
gene id LOC120568806
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 34771789 ~ 34782006 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACACCTGAACCGGGATGACTGAACTGTGGTGAAGTCGTTAGGGTTACAGCGGTCCTGAGGCGCATTAGCAGCCAAATAATTGGCTCAAACAAATTCACAGCTTGATTTATTCTTCTGTCCTCAAGATTTATCAGTTCATCATCTCCGTACAGCTGCCGCCAGCAGAATGGACCTGCTGCCTGACATCTGGAGGGAGGACTACTGGCTTCCTCCAGGAGTAACCTGGAGAGACGTGGAGCAGCTGGCAGACTCTGAGCGAGCACGACCCCGGGACCTTCTCATAGCTCTGCCTCTCGCTCTGGGCTTTGTTGCGCTACGCTACGTGTTTGAGAGgttttttgcCCCACCCATGGGCCGATGTTTGGGGGTGAAGAACAGAATACAAGCGACTGCTGCCCCCTCCCCGAAGCTGGAGTCGTTTTACACCCAGAGGAGCAGACAGCCGACACAGAGTGAAATTGTTAATTTGATGTCGCTGTGTGGCAAAACGCAGAGGCAGATTGAGACCTGGTTCAGACTTCGCAGAAACCAAGACAGGCCCAGTCAAACCAAGAAGTTTGGTGAAGCTGCTTGGAGGTTCTTTTTCTACATCACAGCCTTCACGGCTGGACTGGCCTGTTTGATTGATAGACCATGGTTCTGGGACCTGAGGGAATGTTGGAGGAAATATCCAGTTCAGATCATGGAGAGAGCTCATTACTGGTACTACATGCTAGAGTTGGGTTTTTATGGCTCTTTGCTACTCCGAATCTCTGTGGACGTCAAGAGGAAGGATTTTAAAGAGCAGGTGATCCACCATTTGGCTACCATCTTCCTTCTGAGTTTCTCCTACTGTGCCAACTACCTTCGCATCGGCACCTTGGTCATGCTGCTTCACGACTCCTCTGACATCCTGCTCGAGTCTGCCAAGATGTTCAACTACGGCACTGGCTGGAGGAGAACTTGTGACACGCtgtttgttgtgtttacttTGGTCTTCCTTGTGACTCGACTGGTGATTTTTCCCACCAAAATCATCCATACCACTCTGGTACTGTCCATGGAGGATTTTAAACCTTTTCCCGGCTACTACTTTTTCAACGTCCTGCTGATGGTGCTGCAGGTTCTTCACATCTTCTGGGCTGGCCTAATCTTGCGCATGGTTTATAAATTCCTGAAAGGCAAGCTGGAAAAAGATGAACGCAGTGATGAAGAGAGCGACgttgaagaagaagaggacaatAACGGGAGAAATGTGGATCAAGGAGGAGATCATTGTTGGGAGAGAAGTAAAGACAAACTGGACTCCAAACTGTCTAGGCTGACCAACAATTGTGTCCTAAATAACTTGACCAACCACAGGGAGTCTGTAGCCGACAAGATGCGAAAAGCTGATTAAAGTCTTGATGATTACCTTTTACAGAAAGTCACAGTTTTTGAAAATTGAAACGGCCTTGGTTTACATTGAGTGGTACAAAATGAAAGGTGTGATTCTTCACGTTTACTACAGATTGTGTATGGTGATGCCACTGCTTCACACTTAACGGAGAGGAGAATTAGACAAGTGATTACAGTTTCATCATTAGTCTTTGTAAAATACAGACATAGCAGAGGATAGTTTCGATCTATCGACCTCTGGGTTATGGGCCCAGCACGCTTCCGCTGCGCCACTCTGCTACACACCCCAGATGGGACTCGAACCCACAATCCCTGGCTTAGGAGGCCAGTGCCTTATCCATTAGGCCACTGGGGCTGCTGCAGTTGTTGCAGAACAACTGTTCACAATTCATTGCTCAGTGATAGTTACACAGACActataatgctttttttttttgtcactttgcttgttttctttctttaattGTAACTAAGAAATATCACAATAGCAAAACAAAAGATGAAAACTTATATTAGAAAGCTGATGTAAGACCCAGTTATAGACAGAAGTGTTTGTTTAATattgtaaaataatgaaattgTTACACAACATGCAGTAGACATTTAAATGCAGGAAATAAAATCACGATTTTACTCTTTC

Function

GO: NA

KEGG:

id description
K23727 CERS5_6, LASS5_6; sphingoid base N-palmitoyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162091 lncRNA downstream 27131 34741217 ~ 34744658 (-) True G120365
TU162057 lncRNA downstream 138652 34632905 ~ 34633137 (-) True G120341
TU162045 lncRNA downstream 162339 34609086 ~ 34609450 (-) True G120332
TU162038 lncRNA downstream 202945 34568078 ~ 34568844 (-) True G120325
TU161908 lncRNA downstream 367776 34400823 ~ 34404013 (-) True G120230
TU162100 lncRNA upstream 5202 34787208 ~ 34792765 (-) False LOC120568808
TU162103 lncRNA upstream 27890 34809896 ~ 34819589 (-) True G120374
TU162108 lncRNA upstream 44514 34826520 ~ 34826763 (-) True G120379
TU162123 lncRNA upstream 123151 34905157 ~ 34905380 (-) True G120394
TU162124 lncRNA upstream 135294 34917300 ~ 34917535 (-) True G120395
XM_039815554.1 mRNA downstream 59202 34710574 ~ 34712587 (-) True LOC120568197
XM_039814837.1 mRNA downstream 258752 34510848 ~ 34513037 (-) True LOC120567794
XM_039814834.1 mRNA downstream 269097 34486051 ~ 34502692 (-) False crtc1a
XM_039816519.1 mRNA upstream 5162 34787168 ~ 34792767 (-) True LOC120568808
XM_039816520.1 mRNA upstream 19850 34801856 ~ 34814127 (-) True LOC120568811
XM_039816668.1 mRNA upstream 45107 34827113 ~ 34834390 (-) True LOC120568916
XM_039814712.1 mRNA upstream 67303 34849309 ~ 34850649 (-) True LOC120567735
XM_039816476.1 mRNA upstream 80046 34862052 ~ 34863627 (-) True LOC120568778
unassigned_transcript_566 other downstream 3275 34768441 ~ 34768514 (-) True trnan-guu_9
TU161906 other downstream 367776 34400823 ~ 34404013 (-) False G120230
TU161838 other downstream 542739 34228626 ~ 34229050 (-) True G120168
unassigned_transcript_565 other downstream 586701 34185016 ~ 34185088 (-) True trnak-cuu_2
TU161606 other downstream 1112513 33654302 ~ 33659276 (-) True G119989
TU162119 other upstream 113573 34895579 ~ 34895913 (-) True G120390
TU162164 other upstream 230402 35012408 ~ 35014214 (-) False LOC120567704
TU162546 other upstream 1929204 36711210 ~ 36737250 (-) False LOC120567714
unassigned_transcript_582 other upstream 2217811 36999817 ~ 36999899 (-) True trnal-uaa_10
unassigned_transcript_583 other upstream 2221954 37003960 ~ 37004042 (-) True trnal-caa_5

Expression Profile