RNA id: XM_039816513.1


Basic Information

Item Value
RNA id XM_039816513.1
length 4317
RNA type mRNA
GC content 0.44
exon number 11
gene id LOC120568807
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 34743728 ~ 34766331 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atatatatatatatatatatatatcaccccTGTAAATTATATTAAGGCTTAAAGTTCTGCATAATTAAGGGAGTTACACTTTGAGTGACAAGTGCCCCCCCCCGTCACAGGATAGCATAGAGAggcaaagtccctccccttccagtGGACCTCATGGGAACTTATTTCGTTAAAAAATATGTACGGTAGTGAACagggaaagatttttttttttttttacaagtttgTCAATTTAAAGATCATTTTGTGAATCTAGAAAGTCCCATAGTGGTCTCTCGAAATGTACGTCACCTTGCTTGCTGCTTGGCTTGCTAGCTATCTAACTTagctgttccacaacacataaAACCTAATGTGATTCATCCAGTGTCTTTTTATCGGTCgggaagcaaaagaacaagcaagatccGTTGCTTGTGCGAGCAACATATTACGTACGAAACACAGGCATcatagcttcagcgagacgtcacaACTTTGGAGTGAGTCTTCTACTTCAACAGTTTTccaacacatacaaactttacTAAAATAAGGTCCATGGTGatccaccggaaggggagggactttgccTGGCAGGATGTATAATAAGAACTGGGTATGGTGCCACCACTCAGTCTTCAAGCCAATTTTTCTGGATAAGATCATCATTACTAACTAGATGCTCCTGTTCGTTGACATATTTTAAACTATATAAATTCTTATCcatttcttaaaaaataaaaaacttttttaattCTACCAAATGACCACCCCATCCCCTATAGTAGTCTGTGCATGTCCCATTACTTGAGGGTAACTATTGAGTTGGATGTTTTCCTCTTCTATATTTTTGCTATGAAAACATTTGTTTGGCTTATTGCTGTTTAGAAATGATTGATGTTAGTAGTGATTAAAATTATGCTCACAAAGATTCTCCTGTTAATGATCTTGGAAAATTaaagttttcttcttttttgctaTTTCAACTTGACCTCAcagttgtatttctgtttttccCACTTATGTTGCAGATGGATTGGCAGACTGCCACATTTGTAAGCATGTAAGGCTCTCTTCGATCAGAACTACTTGCAGTTATAAATAAAAACCCATTTTGTTACAGCTGTAGTCCCGTATGGGCTGTAGTATGATTCTTAAGAAGTCTTTTTAGGTCAAGACTTTTCCTTCGGGACGCCTTAAAACTGCGGCAAGCAGACCTATAAGACCCAGTTTGCAGTATGCACAAATGCAGGCTCATTGGCTGCAGGCGGGTTGACACAGTTCGCTGCCTCATGCAGCTCTAGCGGGGGCTCGGAGCATGTAGAGCCGGAAGGTGCTACTCTACTGTCCGACTGTTGAATGCGTGCAGCCGGCTGAACGAAGAGCCTGAAACTAGACAGGAGAGCGGAGAAATCGGACCACCGGTACGAGGTCAGAAAGAGAAAGGGGAAAGCTGCTTCATCTTTTCTGGTGGAGGATGGACACACGCCGGACCGCGGTCACTTCAGTCACCGAGGTCAGCAGCTCTTCCTCCGCCGGGTTGTGACTCTCCGGGCTCCGCGGAGGTGTTCGGTGGACGCCGCTGGCCAGGACAGCACAGGACGGTACGGACACTTAGCGGGCTGCAGCAAACTGTGTGCACCACCTTGCAGTGAAACCCCCTGGAGAATAAAGCATCTGGTAGCTCAGACTGAAAGAAAGAGCAGACTGGTACAGCGACAGTAGCGAGGAATTATTGACAGATAGGCTACAACACAAGCTCACCAAGGCTTTACTGTACACCAAAATGGGAAAAGAAGTGTCAGTCACCTTGTAAGATGTTTCCTCACCACAGAGAAAGGGAGCAGCCGATCTTCTGCTCCCGGGCCCATGTTTTCCAGATCGACCCCACCACCAAGAGGAACTGGATCCCCGCCAGCAAACATGCCGTCACCGTGTCCTTCTTCTATGATGCCAACCGTAACGTCTACCGCATCATCAGCGTGGGTGGGACCAAGGCAATCATCAACTGCACCGTAACACCCAGCATGACGTTTACCAAGACGTCCCAGAAGTTCGGTCAGTGGGCGGACAGCAGGGCCAACACTGTGTACGGGCTTGGTTTTGCTACCGAGCAACAGCTGCACCAGTTCTCCGAGAAGTTTAAGGAGGTGAAAGATGCAGCTCGTCTGGCACGGGAAAAGTCGCAGGACAAAGAACTGGCCAACACGGCGCTAAGCATCGCTGCTCCTCAGTTTTCGCAGGACCTCTCGGACGAACTCCAGTCTCCGCCGGTGATGTGCGTGAACGGACCCGAGGACAAGCTGTTCCGCAGCCAGAGCGCGGACATCACGCTGTCTTCTGAAAAGGAGCGCATTAAAAAGATGCTCTCTGAAGGGTCTATCTGTGAGATGAACCTGGAAGCAGAGTTCTTCTCTCTGCAGGACAGCAACACCAAACTGGTGGCAGCTTTGCATGAGGCTAATGCTAATGTGGAGCAGTGGAAGAAACAGCTGACAGCATATCAGGAGGAGACGGACAGACTCAGAGAGCAGGTGGCTGAGTTAGAAGCCCACGGAGGCCACGGCCCCAGTGAGCGGCTGAAGGATGAGCTGACGCAGTCCCTGGAGGAGCTGGAGGCCCTGCTCAAGGCCAAAGATGAGGAAATCCACATTTTGCAAAGCAAGAAAGTAGAGTACCACGAGATGGAACATGACAGGGATGAGGCCATTCACAGATTACGGGAGACAGAGATGCGTAATGCAGAGTTGGAGCGCCGCATCCAGAACACAGAGCAGAACCTGAATAACTCTCTGGAGGATCGGGATCGCATGGACTCTGAAGTCCAAAGGGCCATCGAAATTCTGGACATCAAGATCTTTGACCTTAACGATCTTCGCCAGAGCCTGGTTAAACTCATCGACAAATAATCCAACCCAAGAAGGAGAGATGGAACAGATGACGGATTTGACTTCGTCGTGGCCAGTGCAGCgagtggggggtgggggaggaggggggagaggagaaGATGGAGCTAGACCGGTCCTCTTCAAGCACAAGAAGCATCTTCTCAGCTGCAGGGAGAGTGCTCCATGTCTGTGTTGCAGCAGTACTCTGCAACACACTGCAGGTGTTGGCCTAAAGCAACAGCACATAAATGCTTGTCCAGTCTAATGTAACGCTTCATGTTGCTTTCAAGGGGTAACACTTAATGCAATAAAAACCAACTTTAAGGTAAGTATTTAACACGGCTAGACATTTCATATTGAGAATTGGTGCTTGTAGTTTTCCATAAGTATGACTTTTTGTACACCAAATGGCGATGCAGTGTCAGTATGAGTGATAAGAGGCCtttgtttttctccttttcaactgacatgtttatatttaaacatCTTTACAACAAAATGAGACCATGAAGtgaatgcaaataaaaaaaagagcacaaGACAAAATGACTTCTAAGGGATTTGCCTATTAAACAGCCTGCATACAATATAATTGTTACAGAATTAACAGATAACAAAGTTCCATTTGTGCAGACATAAACATGTATGGTCTCGTAGTTCCCCATGCATAAAGTAGCAGTGTGGTTCCAAATAGTGCTTTTTTTCCATAGGAATAAGCAATGAAACAGATTAAAGGTCAGTAAAAAAAGTGCGCTAAGTGTTTTATATTTAAGTAAGGCATGGTTACACAGCTTCCCCTTGAACATTAGATCTGAATATTGACACCAAAGATCGAATGTTAAGAGCAGAGTCGTCTATAAGGTCTTTCAGCAACGTGGCCGTTACATCTTCATTTAAGCTCGTAAGAAACCTTTAAACCTAAGATATGTGACAGTAACTTGTAAGTAGATAAGACAcaataaataattacatttagGGTAAATAAGTATTTTCCACATTGATATAAATCAATAATGCTACAGCTATGAGGtaaacacaagtaaaataagTAATCACTTATCACATAAGTTTAACTGGTCCCGTCTGAATAATCGTCTTGTGCATCATCTCTTTACAAACCACTGACTTAGTAATGTATCTACGCATTCAAGGaaatttaagacattttctgCCTTCTGTCATATTTCAGCACGTTACCTTTAGCTTTGGACAACATGGCACACGCCTTGAGAGTGGAGCTGTACTGTATGAAATGTGAATTTATTTAAAAGCAATGTCTACTTCACACAGACTGTATTGTTTGACATAGTCCATAATGATATGTTTGCATTATTTTGTCAAGCCTTATTGTTGATAGTTATGCCAGCTGTGTCTCAAACTTTGAGCTGTTGTCATGACAGTTTGGAAATAAAAGCAAAGAATGACATCACTCGGTCATTTTAATGTA

Function

GO: NA

KEGG:

id description
K15010 HOMER; homer

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU162009 lncRNA upstream 78514 34645692 ~ 34665214 (+) False pde4ca
TU162002 lncRNA upstream 125516 34617774 ~ 34618212 (+) True G120295
TU161997 lncRNA upstream 135972 34603860 ~ 34607756 (+) False pik3r2
TU161998 lncRNA upstream 174963 34568185 ~ 34568765 (+) True G120291
XR_005640612.1 lncRNA upstream 251351 34486228 ~ 34492377 (+) False LOC120567793
XR_005640791.1 lncRNA downstream 1770 34768101 ~ 34771677 (+) True LOC120568809
XR_005640792.1 lncRNA downstream 26427 34792758 ~ 34797847 (+) True LOC120568810
TU162120 lncRNA downstream 130204 34896535 ~ 34897133 (+) True G120391
TU162122 lncRNA downstream 138815 34905146 ~ 34905390 (+) True G120393
TU162125 lncRNA downstream 186994 34953325 ~ 34954407 (+) True LOC120568917
XM_039816510.1 mRNA upstream 718 34721550 ~ 34743010 (+) True LOC120568804
XM_039815559.1 mRNA upstream 23858 34715076 ~ 34719870 (+) False pgpep1
XM_039815558.1 mRNA upstream 25670 34714976 ~ 34718058 (+) True pgpep1
XM_039815555.1 mRNA upstream 35755 34692627 ~ 34707973 (+) False LOC120568198
XM_039815556.1 mRNA upstream 35755 34692762 ~ 34707973 (+) True LOC120568198
XM_039816523.1 mRNA downstream 43561 34809892 ~ 34824821 (+) False LOC120568812
XM_039816521.1 mRNA downstream 50119 34816450 ~ 34824821 (+) True LOC120568812
XM_039816995.1 mRNA downstream 399327 35165658 ~ 35168716 (+) False LOC120569116
XM_039816996.1 mRNA downstream 399816 35166147 ~ 35168716 (+) True LOC120569116
XM_039814983.1 mRNA downstream 495227 35261558 ~ 35262902 (+) True LOC120567912
TU161934 other upstream 286117 34453722 ~ 34457611 (+) True G120249
TU161901 other upstream 339727 34400801 ~ 34404001 (+) False rps28
TU161873 other upstream 425962 34317148 ~ 34317766 (+) True G120200
TU161769 other upstream 577882 34164103 ~ 34165846 (+) False mrpl34
TU161681 other upstream 786224 33955183 ~ 33957504 (+) True LOC120568585
unassigned_transcript_567 other downstream 5743 34772074 ~ 34772146 (+) True trnar-ccu_3
unassigned_transcript_568 other downstream 5819 34772150 ~ 34772221 (+) True trnam-cau_25
unassigned_transcript_569 other downstream 9747 34776078 ~ 34776149 (+) True trnam-cau_26
XR_005640811.1 other downstream 837057 35603388 ~ 35609359 (+) False LOC120568940
unassigned_transcript_570 other downstream 1461493 36227824 ~ 36227906 (+) True trnal-uaa_3

Expression Profile