RNA id: XM_039816521.1


Basic Information

Item Value
RNA id XM_039816521.1
length 1415
RNA type mRNA
GC content 0.51
exon number 5
gene id LOC120568812
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 34809892 ~ 34824821 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCCTCCCGCTGCAGAGTTGGGAGCTCTCCCTTTCTGCGACCAGCTCGCCTTGACAGCCAACACTGGCGCAGAGTCTCAGCGCAAACCTTTACCATATTTTTTTCTGGCATATAACGATAATTCATACGCACACTTTTCACACATCCTCTTCCGGAGACAAGCGTTGGAGCGGCCTCGTCTAGAATGGGGAACCGAGACGACGAATACGATTTCTTGttcaaagTTGTGTTGATTGGGGACTCGGGCGTAGGGAAGAGCAACCTTCTCTCTCGCTTCACACGGAATGAGTTCAACCTAGAGAGTAAGAGCACCATCGGGGTGGAGTTCGCCACGCGCAGCATTCAGGTGGACGGCAAGACGATAAAGGCTCAGATCTGGGACACAGCAGGACAGGAGCGCTACAGAGCCATCACCTCGGCATACTACAGGGGAGCGGTGGGGGCGCTCTTAGTGTATGACATCGCCAAACACCTGACCTACGAGAATGTGGAGCGCTGGCTGAAGGAGCTGAGAGACCACGCCGACAACAACATCGTCATCATGCTGGTTGGCAACAAGAGCGACCTGCGCCACCTCAGGGCCGTGCCGACCGATGAGGCCCGGGCCTTCGCAGAGAAGAACAATCTGTCCTTCATAGAAACGTCAGCCTTGGACTCAACAAACGTTGAAGAAGCCTTCAAGAATATCCTTACAGaaatctaCCGCATCGTCTCGCAGAAACAGATTGCTGAGCGGTCCGCCCATGACGAGTCCCCGGGAAACAACGTGGTGGACATCAGCGTGCCACCCACCACGGACGGCCAGAGGGGGAGCAAACTCCAGTGCTGTCAGAACCTGTAACCCGCGGCAAACGTCCCTCCTCACCTGGGTCGATTATTCATTGAAATCCACAGTGTTGGCATGTTTCCATCCGCCTGGGGTGCAATATTGTCTGAATCTGCACTTTTTTAGATCAGTGGAGTCAGTTCCGTTATGCCACAACCGATCAGTTCCAGAAAGAAGTGTTTTGACTTGATTTCAAATGGTAATCTGACCCAGGTACAATCTGCTACATCCCAGTGCAAAAACAGGACTGACGGTACTGCGTACAGTATGTAGCTGCCACAGTTACCCATGATAGCGTAGCAGAATAGCTTTGCCTGAGACCTTGTAAGCCTAGACGTCTCCCTGGTAGACGGGTCCTGCCGCGTGTTGGAGGCCTGGGTTTGAATCCTTCCTGTTTCAGTCGTACCAGCAGTCCTGTTTTTGGGCTTTCCTCTTCCTCGTTCAGTCATCATCTCAAAAGTGGCTATGACGCTGCTGATGCTTATTTCATTTTGTGTAAAATatattctttttgttttgttttgattttgataGCTTGTCCGCTCACATACATTATATTAATGCCATGAAATTAAATTTTACAATATTA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07905 RAB11B; Ras-related protein Rab-11B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640792.1 lncRNA upstream 18603 34792758 ~ 34797847 (+) True LOC120568810
XR_005640791.1 lncRNA upstream 44773 34768101 ~ 34771677 (+) True LOC120568809
TU162009 lncRNA upstream 151236 34645692 ~ 34665214 (+) False pde4ca
TU162002 lncRNA upstream 198238 34617774 ~ 34618212 (+) True G120295
TU161997 lncRNA upstream 208694 34603860 ~ 34607756 (+) False pik3r2
TU162120 lncRNA downstream 71714 34896535 ~ 34897133 (+) True G120391
TU162122 lncRNA downstream 80325 34905146 ~ 34905390 (+) True G120393
TU162125 lncRNA downstream 128504 34953325 ~ 34954407 (+) True LOC120568917
XR_005640805.1 lncRNA downstream 128720 34953541 ~ 34954407 (+) False LOC120568917
TU162127 lncRNA downstream 140325 34965146 ~ 34965540 (+) True G120397
XM_039816513.1 mRNA upstream 50119 34743728 ~ 34766331 (+) True LOC120568807
XM_039816995.1 mRNA downstream 340837 35165658 ~ 35168716 (+) False LOC120569116
XM_039816996.1 mRNA downstream 341326 35166147 ~ 35168716 (+) True LOC120569116
XM_039814983.1 mRNA downstream 436737 35261558 ~ 35262902 (+) True LOC120567912
XM_039814677.1 mRNA downstream 606858 35431679 ~ 35443813 (+) True LOC120567707
XM_039816699.1 mRNA downstream 770057 35594878 ~ 35642033 (+) True LOC120568940
unassigned_transcript_569 other upstream 40301 34776078 ~ 34776149 (+) True trnam-cau_26
unassigned_transcript_568 other upstream 44229 34772150 ~ 34772221 (+) True trnam-cau_25
unassigned_transcript_567 other upstream 44304 34772074 ~ 34772146 (+) True trnar-ccu_3
TU161934 other upstream 358839 34453722 ~ 34457611 (+) True G120249
TU161901 other upstream 412449 34400801 ~ 34404001 (+) False rps28
XR_005640811.1 other downstream 778567 35603388 ~ 35609359 (+) False LOC120568940
unassigned_transcript_570 other downstream 1403003 36227824 ~ 36227906 (+) True trnal-uaa_3
unassigned_transcript_571 other downstream 1403634 36228455 ~ 36228537 (+) True trnal-uaa_4
unassigned_transcript_572 other downstream 1404232 36229053 ~ 36229135 (+) True trnal-caa
unassigned_transcript_573 other downstream 1410262 36235083 ~ 36235153 (+) True trnal-uaa_5

Expression Profile