RNA id: XM_039816526.1


Basic Information

Item Value
RNA id XM_039816526.1
length 1765
RNA type mRNA
GC content 0.50
exon number 12
gene id casp8
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 13196739 ~ 13207620 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGAGTAAAGGGCTTTAAAACAAGTACAGTGAGCTTAACACCAGGCCTGTGCTGGAGGGAGTGGGTGTGTGATGGATAGGCTGAAGCTGTCCCGCATAGATGAGGAGCTGGTGTCGTCTGAGGTGGCAGCTCTCTGCTTCTTGTGTCGTGATGTCATCAATAGGAAACGCCTGGAGGGGATCGTGGATGCAAAAGGCCTGTTCTTGAGACTAGAAGAGAAAGGACAGTTGGAGAACGATTTCTTCCTGAGTCAGCTGCTCCAAACTATCGGTCGAGCAGATCTCCTCAACCTGCTGGAGACAGACAGCAGGCGACCAGAAGAAACCGACGCAAATCCCGTGCTGTCGGATTACAGGGTGATGCTGTACCGAGTATACGAGGACATGACAGGGGAAAATCTTGAGAAGATGAAGTTTCTGTTGTCCAACAAACTGGGCAAAGCAAAAATTGAGGCATGCAATACAGCACTGGATGTGTTTGCTGAAATGGAACAGGCTGGTTTACTGTCAAACACAAACCTACATGAGCTGCATACAATGCTGCTGGAGTTTGATCAACAACTGGCATCGACTTTACAGCGCTACAGGGAAGCAACCCAGCTGCCTCGAGTTCCTCGCAGCAGTGTGGATTCCCAGAGGGTCAACACCTTTCAGCCATCACAACCCAGCGACGCAGGACCATCCGATGCATTCGTTGTCTCCGATGCAGAACCAAAGACCTCCCCTCTTTTTGATCACACAGACTACTACTCCCTGAGTCATATCCCAcgtggtttgtgtgtggtcatcAATAATGAGAACTTCTGGGGAACAGGATTGAAAAATCGAGGCGGGACTCAGGAGGATGCAAAGGCTCTGCACACAGTGTTCACCCGCCTTGGCTTTGAAGTGGAGGTACACGACGACCTGACTGCCCGCGAGATGCGTCTTGTACTGGAAAAGCTGGGCTCAAGGAATTTTTTGGATGATGATGCCTTGGTGGTTAGCGTGCTGTCCCATGGAGAAAAGGGATGTGTCTATGGGACTGATGAGAAGGCGGTGCTTTTGCAAGAACTCTCCAAGCCCTTCACTAGTGGGAGAGCTCCCACCTTGGCAGGGAAGCCCAAACTCTTCTTCATCCAAGCGTGTCAGGGAAACAACTACCAGAAAGGATCCCTGCCGTGTCCTCCAAAGCCAAGACAGGAGGAGGGGGAAAGACAGAGCCGCCTGGAGGAAGATGCAGGTCGCGTGGAGGGTGAGACAGTGCCTTGGGATGCTGACTTTCTGCTGGGCATGTCCACCGTGCCAGAGTGCAAGTCGTTTCGAAGCACTGCCACAGGCTCCATCTACATCCAGGAGCTGTGCAGGCAGCTGATGAGGTCAGCAGAAAGCTCGGAGATGGATGATGTGCTCACTGTGCTGACACGTGTGAACAGGGAGGTCAGCAAAAGAGAATATTTAAACTACAAACAAATGCCAGAGCCCAAGTACACCCTCACCAAGAAGCTCGTCCTCAAATTTGTTTGAGCTGACCGGGACCAAGTGCAACGCTGAAAATGTGCCATATTCACATAGAGTCACATAGACCCAACTGGTTTACTGtgtgtatgactttttttgtttgttttttaatccgACTTCATGATACAACTTAAAGGATGAATTTGAATGTAGGCGTCTCTGTCTGGAGAGTCTGATATCTCTTAATCTTGCAAAAGCATCATGTTATATAAAATGTAACAGAAGCCACTCCCGTGTGATTTaggaaaaataaacaatcagaCCTCA

Function

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0006508 proteolysis biological_process
GO:0004197 cysteine-type endopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154011 lncRNA downstream 18988 13176803 ~ 13177751 (-) True G114177
TU153994 lncRNA downstream 79289 13114645 ~ 13117450 (-) False G114166
TU153995 lncRNA downstream 79289 13114645 ~ 13117450 (-) True G114166
TU153981 lncRNA downstream 92342 13103242 ~ 13104397 (-) True G114159
TU153940 lncRNA downstream 100371 13095333 ~ 13096368 (-) False G114129
TU154021 lncRNA upstream 13051 13219277 ~ 13223865 (-) True G114183
TU154040 lncRNA upstream 74705 13280931 ~ 13286164 (-) True G114196
TU154045 lncRNA upstream 80425 13286651 ~ 13287220 (-) True G114199
TU154049 lncRNA upstream 81956 13288182 ~ 13288993 (-) True G114202
TU154070 lncRNA upstream 188235 13394461 ~ 13406160 (-) True G114215
XM_039816319.1 mRNA downstream 782 13186254 ~ 13195957 (-) True tmbim1a
XM_039815657.1 mRNA downstream 38449 13152095 ~ 13158290 (-) True LOC120568263
XM_039815658.1 mRNA downstream 45261 13132932 ~ 13151478 (-) True LOC120568264
XM_039815660.1 mRNA downstream 81450 13112363 ~ 13115289 (-) True cfap410
XM_039816177.1 mRNA downstream 221411 12966466 ~ 12975328 (-) True LOC120568578
XM_039816340.1 mRNA upstream 1804 13208030 ~ 13214290 (-) False LOC120568680
XM_039816339.1 mRNA upstream 1804 13208030 ~ 13214290 (-) True LOC120568680
XM_039816334.1 mRNA upstream 8654 13214880 ~ 13218070 (-) True LOC120568677
XM_039816333.1 mRNA upstream 8654 13214880 ~ 13218069 (-) False LOC120568677
XM_039816331.1 mRNA upstream 8654 13214880 ~ 13217698 (-) False LOC120568677
TU153973 other downstream 108176 13084561 ~ 13088563 (-) True G114152
XR_005640810.1 other downstream 428114 12760915 ~ 12768625 (-) False LOC120568934
TU153584 other downstream 593830 12601180 ~ 12602909 (-) False nedd8l
TU153382 other downstream 978472 12218062 ~ 12218267 (-) True G113805
unassigned_transcript_557 other downstream 2307787 10887089 ~ 10888952 (-) True LOC120567758
TU154602 other upstream 1407387 14613613 ~ 14615772 (-) False LOC120568687
TU154687 other upstream 1589692 14795918 ~ 14797044 (-) True G114680
XR_005640598.1 other upstream 2083960 15290186 ~ 15304610 (-) False mfsd8l2
XR_005640597.1 other upstream 2083960 15290186 ~ 15304610 (-) False mfsd8l2
XR_005640842.1 other upstream 2204936 15411162 ~ 15411347 (-) True LOC120569139

Expression Profile