RNA id: XM_039816531.1


Basic Information

Item Value
RNA id XM_039816531.1
length 1527
RNA type mRNA
GC content 0.58
exon number 9
gene id LOC120568814
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 13595178 ~ 13619698 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCTGGTTGTGAATCGGAGGCCAGCGGCCCCACAATGCCAGGCGGGGGAGCCCCTCTCTCAGCTACACACCACAGCATCACCGCCGCCTCGCCTCACTGAaaaggacagagaggagagaaatgCAAAGGGATGTAAGATGGCAGAGCTACAAATGCTATTAGAGGAGGAAATCCCTGCCGGTAAAAGAGCTCTTGTGGAAAGCTATCAGAACCTGTCCCGAGTTGCGGAATACTGTGAAAACAATTATGTTCAGGCTCAAGACAAGAAGAAGGCCCTGGAGGAAACCAAGGCCTACACCACCCAGTCTCTGGCCAGCGTTGCCTACCAGATCAATGCCTTAGCTAACAATGTGCTGCAGCTGCTGGACATCCAGGCCTCGCAACTACGACGCATGGAGTCCTCCATCAACCACATCTCCCAGACAGTGGATATCCACAAGGAGAAGGTGGCACGTCGAGAGATTGGCATCCTGACCACAAATAAGAACACCGCTCGCACCCACAAGATCATCGCCCCGGGCAACATGGAGCGGCCGGTGCGCTACATTCGAAAGCCCATCGACTACACACTGCTGGATGATGTGGGACACGGTGTCAAACAACATGGGAACAATGCGGCAGGACGAGGAGGGACGCTTTCCAGGACCACCCCACCTACACAGAAACCCCCGAGCCCCCCCATGGCTGGTCGTGGTACCCTGGGGCGTAACACTCCCTACAAGACCCTGGAGCCAGTGAAGCCTCCGGTAGTGCCCAATGACTACATGACGAGCCCGGCCCGACTGGGCAGCCAGCAAAGCCCTGCACGCACAGCCTCTCTCAACCAGAGGCCCAGGACACACAGtggCAGCAGTGGGGGTAGTGGCGGCAGGGAGAACAGTGGAGGCAGCGGAGTTGGTATGCCTCTAGCAGTtcccaccccctcccctcccagTATGGGACAAGTGGCGACATCCTCTGCCTCAGTGCCCCAGGGCCCTGGCTTGGGTCCCATACCCATGTCCCAGTTTGGCACCATCTCCCGCCAGATCTCCCGTCACAActcctccaccacctcctcGGCCTCCATGGTGTCGGCCACCGGCACCTACCGCCGCGCACCCTCAGTCTCCTCCCAGCAGCCACACATCAACGGGGGCCCCGCCTACCCACAGAACTCAGTAACAGACAGCCCCGCCCCGCCTCCTCCGCCTCCCCCAGAGGACATGGGTGTGTTTGAGGagccctctcctcctcctcctcccccacctGTGGACTATGAAGAAGAGGAGGCCGCAGTGGTTCATTACAGCGATCCCTACGCTGACGGCGACCCCCACTGGGCCCCCAAGATTTACTTAGAGAAAGTTGTGGCCATCTATGACTACAGCAAAGACAAGGAGGATGAGCTGTCCTTCATGGAAGGAGCCATCATCTacataatcaagaaaaacgacGACGGCTGGTTCGAAGGTGTCTGTAACGGCGTCACCGGACTCTTTCCAGGAAACTACGTCGAGTCGATCATGCACTATGCTGactaaaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154108 lncRNA downstream 30375 13556604 ~ 13564803 (-) True G114247
TU154088 lncRNA downstream 45712 13533138 ~ 13549466 (-) True LOC120568710
XR_005640752.1 lncRNA downstream 45736 13536474 ~ 13549442 (-) False LOC120568710
TU154064 lncRNA downstream 122827 13469531 ~ 13472351 (-) False dis3l2
TU154072 lncRNA downstream 188348 13405234 ~ 13406830 (-) False G114215
TU154127 lncRNA upstream 3205 13622903 ~ 13625479 (-) True G114256
TU154129 lncRNA upstream 6078 13625776 ~ 13628667 (-) True G114257
XR_005640644.1 lncRNA upstream 322357 13942055 ~ 13948115 (-) True LOC120567953
TU154347 lncRNA upstream 330173 13949871 ~ 13952153 (-) False tfr1a
TU154346 lncRNA upstream 330269 13949967 ~ 13952153 (-) False tfr1a
XM_039815730.1 mRNA downstream 19604 13569349 ~ 13575574 (-) True si:ch211-252f13.5
XM_039816180.1 mRNA downstream 112953 13469654 ~ 13482225 (-) True dis3l2
XM_039816179.1 mRNA downstream 129468 13440689 ~ 13465710 (-) True LOC120568580
XM_039816491.1 mRNA downstream 157729 13421548 ~ 13437449 (-) False LOC120568786
XM_039814918.1 mRNA upstream 20824 13640522 ~ 13644542 (-) False LOC120567843
XM_039814919.1 mRNA upstream 20824 13640522 ~ 13643432 (-) True LOC120567843
XM_039814920.1 mRNA upstream 23662 13643360 ~ 13645194 (-) True LOC120567845
XM_039814923.1 mRNA upstream 31570 13651268 ~ 13659457 (-) True LOC120567847
XM_039814928.1 mRNA upstream 41840 13661538 ~ 13687808 (-) False LOC120567848
TU153973 other downstream 506615 13084561 ~ 13088563 (-) True G114152
XR_005640810.1 other downstream 826553 12760915 ~ 12768625 (-) False LOC120568934
TU153584 other downstream 992269 12601180 ~ 12602909 (-) False nedd8l
TU153382 other downstream 1376911 12218062 ~ 12218267 (-) True G113805
unassigned_transcript_557 other downstream 2706226 10887089 ~ 10888952 (-) True LOC120567758
TU154602 other upstream 993915 14613613 ~ 14615772 (-) False LOC120568687
TU154687 other upstream 1176220 14795918 ~ 14797044 (-) True G114680
XR_005640598.1 other upstream 1670488 15290186 ~ 15304610 (-) False mfsd8l2
XR_005640597.1 other upstream 1670488 15290186 ~ 15304610 (-) False mfsd8l2
XR_005640842.1 other upstream 1791464 15411162 ~ 15411347 (-) True LOC120569139

Expression Profile