RNA id: XM_039816539.1



Basic Information


Item Value
RNA id XM_039816539.1
length 4154
RNA type mRNA
GC content 0.46
exon number 18
gene id pde1cb
representative True

Chromosome Information


Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 19648419 ~ 19751633 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


AGACATGCCGACATTCTCCGGTTAAACTCTGTTTTTCGGTTCTTTAATCAATTTGATATCTTTCTGTCGGTGAATTTATCTAAAAATGACAAGCTAACAGGTTGTGGATGACAGACGTGGGGTTTGTTCGTTGGTTTCGCAGAGTTAAACAAACATGGTGTCAAGCATAGATAtacaacattttgttttgttttattgtgtcaAGTTTCAACCGGTTTTGAGTGGCACGAGAGGTAACCTCAGAGTAACCGATTCCGACTGAAGCTTTTTAACCTTTGTTTGGGGATGGGCTCGGTGACTTCTGCTCTAACACGGACAAGAAACGCGTTGGTGAAAGTGGGTTCAGAGCCGGAGGACCCGGACAGAAGCCAGTCCGCTCCGCAGTCGGACCGGGCCAAGAAGAAGAGCACGCGGTTCAACGTCTCGAGCCAAACAGGACGGCAGAGTTCCCGCCAGGCGCTGTCCGAGGTGCTGAGCAGACAAGACTCCGTCGGAGCTAAACGCACTTTGAAGAAAAACACTTCTGACGGCCATCAAAGCATGGCGAATGAAGATGGGGAGAGCTCCACCAGACCACAGGCCAGTTTTGCACgcTCAAAGTCCCAGAGTGCTTTGTGGAACGCCATCACGGCAGGGATGGGGATCAAAGGCAAAGAGCAAAAAGCCCCCCCGAATGACACACGGAGTCCTGAAGAGATTCTGGCTGATGATCTTCCTACAGCAGATGAACCAGATGTCACAGAGAAAACAGCCATCAGATTACGATGTCTGGTGAAGCAactggagagaggagaggcttCCCTCATTGACCTCAAGAAAAACCTTGAGTATGCAGCGTTGGTGCTGGAATCCGTTTACATCGAGGAGACGAGGCGTTTGGTGGACACAGAGGATGAGCTCAGTGACATCCAGTCAGAGTCGGTGCCCTCAGAAGTGCGGGATTGGCTGGCCTCCACCTTCACTCGCCAGATGGGCCTGATGCTGCGGCGCAATGAAGAGAAACCCCGCTTCCGCAGTATTGTCCACGCTGTCCAGGCTGGCATATTTGTTGAGAGGATGTACCGGCGTACCTCTAATATGGTGGGACTCAGCTACCCCTCTTCTGTCATATCTGTGCTTAAGcatGTTGACAAGTGGTCGTTTGACGTGTTCGCTCTGAATGAGGCCAGCGGGGATCACGCACTTAAATTCATATTCTACGAGTTGCTCACAAGATACGACCTCATTAGCCGTTTCAAGATCCCAATCTCTGCGGTTGTGTCATTCGTGGAGGCCCTAGAAGTGGGATACAGTAAACATAAAAACCCCTACCACAACCTGATGCATGCTGCTGATGTCACGCAGACTGTACACTACTTGCTACTCAAGACTGGCATGGTGCATTGGTTGACTGAGCTTGAGATCTTTGCCATGATCTTTGCGGCGGCGGTGCACGACTACGAGCACACAGGGACCACAAACAACTTCCACATTCAGACAAGGTCAGACACCGCTATCCTGTACAATGACCGTGCAGTGTTGGAGAGTCACCATGTCAGCGCAGCCTACCGCCTGCTGCAGGACGACGATGAGATGAACATCCTCTACAACCTCTCCAAGGATGACTGGAGAGAGCTGCGGGCTCTGGTGGTGGAGATGGTGCTGGCCACAGATATGTCCTGCCACTTCCAGCAAGTTAAGACCATGAAGAACTTCCTACAGCAACCTGAGGGCATTGACAAGCCCAAAGCCCTGTCACTGCTGCTGCACACAGCAGACATCAGCCACCCAGCCAAAAGTTGGGACCTCCACCATCGCTGGACCACCTCCCTGCTGGAGGAGTTCTTCAGACAGGGGGACAAAGAATCTGAGCTCGGCCTGCCGTTCTCTCCGCTCTGCGACCGAAAGTCCACAATGGTGGCCCAGTCCCAGATTGGGTTTATCGACTTCATTGTGGTGCCCACCTTTACTGTGCTGACGGACATGATGGAACGTATCGTCAAACCGCTTATCGACGAGGCATCCCATTCAGGTTTTGCCGGCTTTAGACGCTCAAGTCTGAACAGTATTAGCGCAGAAGAGACCAAGAGGCACAGTTTGAAGAGCTCCGACAGTAGCTCGTCTGGACAAAGCTCTCTGCTGACGGTGGACCAGAAGAACTTCAAGGCCTTGTGGAACGAAGAGGTTTATCAGAACAGAGAGAGGTGGAAAGCTCAGGCTGCTAAAGAGGCAGAGGAAAGAGCTAAAAGGGAAGTGGAGGAGCAAGCCCAGCAGGAAGAGGCTAGGGAGCCCCAGGAGGTCCACACAGAACCAGAACAGCCTGAACCAAAGGAGGACGAATTGGAGGGAGAGGAGTCAGCAGAGGTCAGCGAACAAGATGGTAACATGGGGGAAACAGAGCCAGGAGCGCAGCCTGGGAGCGCCACACACAAGAATCCTCCACTGCAGAACGGAGAGTTGTCTGAAGGGACTGAATCTCCAGAGGAtgaagaaaagaacaaaagtgACCATGCAGAGGTGGCGATGGAATAAGCGAGCTGTAGAGAATCGCGGCCATACTGTTGCATCTTTGGTGTGTTGCTGCCGACCTGAAACTGCTTTCACCTGTAAAGGGGGGACTCAAACTCACACCAGAGGGAATGCCATTTGTTCGACTGTGTCGCCCTCTACAGGACACCAAGAAACTGATACTTTCACTTCCTTTTTTGTCTCTGTGATCAACTGTTTTTACTTTTACCATGTTTATACTCCTAGGCTCTTACATACAGAGCTTGCAACTCTACCCACGTGCATTATTCCTACCTACCTGCTTATTGATAGGGTTAGACCTGATAGGGAATGACCTTTGAACCTGACTTTGAGCCTTTGAAAAACTGACTTTTTTAAGTTATCCAATCTTTTACTTTGCTCTAAGTTGTGTGTTCAACTCAGCCACAGACATGTAGCCATTGTACAAGTCCCACATCTCACTGCTGTGTTATGCATCCCGGACTATCTCTTTATTAGATTTTGACATCACAAGTATCGCCTGGTAAAATAAGGTTATTTAGAGACATTAGGTTTTGCGTCACAGTCATTTATTTTGGTACTTACTGAATAATACACAAGTGCGGATTTGTGGAAAATGCAGAATAGAAGGACTTCTATAGCTGCTACACAGTATGTACAGCATATGAGTATGTGTACAGTACACTTAGGTTGAATTCACAGGTTTATAGCACTACTATTTTACTAGAAAATACTTCTTAAACACTTCCATTCTATGTAGAAAACTGAACTTTTCCCTGTGCTTTAGGAGCTCCTGTTGGGAGTCTCCAATGTTTGCTGAGGCAAGTTTTTCTTCCACCAGTTGTGGCTCATTTTTTCTCTTTCACGTTTCCTCAGACATTGTGCAATTACATGCCTTTGTGTTCCTTGTAGCCAggtttatatattatttttggtatttctgtttttctttactgtatatattgaAATTTGTATATGTATGGATCTGAGGAAGAGTataaaatacacaatacaatacaccacaacagatattttttttgtgatataATGTAAGATATTGTAGTGAGAAATGTCCAAAAATTAGAATGCAACTTTTGCATTTCAAACATATCACACATTCAAGTTTTTGTTATATATACaatctttttctttactttttttgtaacattcATATTTGTTTTGCACTTGTTGTGTCCTATATGAATCATGCACTAGGTGTGTCTAATATCCTCACATTGTATGTCATTTCTTCATCAAAAGACTTCTTCTCAATGCCTTCTTATATGTATTTAAGCTGTAGCAAAAAGTCAACATTGTTGCTGAATTAGAAAAAAtcgtatatgtattttttttgcagtacAGTTATGTTAGAGCAGCTTCGCCTACGAGGTTGTTGGTGTAATGTTTTTATCgatgtgtttacagtgtgctCGTACACCTAGTCAGTTGAATCCATCATGCTTCTGTGATGCATCTGAAGCTATTAGTCCAAACTGTATCTGCTTCTTGGTTGTTTGCCAGGTTTTTAAGGCTTGTAATGTTGTGTATAGAAGATGCAAATATTGCTTACTGTGCATATGTAAAATATTGTACCTCTGCAATGCAGCTTTTATAATATATACGTAATTAATATGTGTAATTGGAAGAAAAGAAGCATTTTGGCAGTA

Function


GO: NA

KEGG:

id description
K13755 PDE1; calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU156627 lncRNA upstream 10007 19638170 ~ 19638412 (+) True G116175
TU156626 lncRNA upstream 10296 19637878 ~ 19638123 (+) True G116174
TU156620 lncRNA upstream 20800 19627254 ~ 19627619 (+) True G116168
XR_005640784.1 lncRNA upstream 24235 19619229 ~ 19624184 (+) True LOC120568776
TU156563 lncRNA upstream 80401 19554787 ~ 19568018 (+) True G116128
TU156655 lncRNA downstream 860 19752493 ~ 19754448 (+) True G116200
TU156660 lncRNA downstream 81490 19833123 ~ 19834373 (+) True G116204
XR_005640610.1 lncRNA downstream 85181 19836814 ~ 19840804 (+) True LOC120567786
TU156670 lncRNA downstream 121000 19872633 ~ 19873049 (+) True G116214
TU156671 lncRNA downstream 132962 19884595 ~ 19885699 (+) True G116215
XM_039816422.1 mRNA upstream 1895 19639508 ~ 19646524 (+) True LOC120568742
XM_039816212.1 mRNA upstream 32565 19603644 ~ 19615854 (+) True LOC120568599
XM_039816463.1 mRNA upstream 55855 19579117 ~ 19592564 (+) True rgs20
XM_039816464.1 mRNA upstream 55855 19585570 ~ 19592564 (+) False rgs20
XM_039816469.1 mRNA upstream 134957 19510386 ~ 19513462 (+) True myl12.2
XM_039814766.1 mRNA downstream 17656 19769289 ~ 19772164 (+) True neurod6b
XM_039814781.1 mRNA downstream 51358 19802991 ~ 19826972 (+) True LOC120567771
XM_039814794.1 mRNA downstream 103355 19854988 ~ 19882428 (+) True LOC120567775
XM_039814796.1 mRNA downstream 103355 19854988 ~ 19882428 (+) False LOC120567775
XM_039814795.1 mRNA downstream 103357 19854990 ~ 19882428 (+) False LOC120567775
unassigned_transcript_559 other upstream 131474 19516853 ~ 19516945 (+) True trnar-ucu_13
TU156400 other upstream 629693 19017058 ~ 19018726 (+) False LOC120568770
TU156233 other upstream 974357 18672562 ~ 18674062 (+) False LOC120568691
TU156065 other upstream 1294075 18305149 ~ 18354344 (+) True G115729
TU155940 other upstream 1618524 18027280 ~ 18029895 (+) True LOC120567767
XR_005640618.1 other downstream 621602 20373235 ~ 20375633 (+) True LOC120567833
TU157037 other downstream 1131073 20882706 ~ 20915288 (+) False LOC120568904
XR_005640709.1 other downstream 2119320 21870953 ~ 21897391 (+) False LOC120568354
TU157733 other downstream 2856431 22608064 ~ 22612409 (+) False LOC120567968
XR_005640697.1 other downstream 2889877 22641510 ~ 22678731 (+) False LOC120568311

Expression Profile


XM_039816539.1 Expression in all Baseline Samples

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XM_039816539.1 Expression in each Bioproject

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XM_039816539.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1.5.
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