RNA id: XM_039816546.1


Basic Information

Item Value
RNA id XM_039816546.1
length 3113
RNA type mRNA
GC content 0.47
exon number 5
gene id ttpa
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 7952012 ~ 7961067 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cccgctcCAGTAGCAGCCAGCGGCCACAGGCAGTGATATGTAGCCGGGGGCCTGCCATAATAACGCGGGTGCGACATGAACGGGGCTCAGCTCAGTGAGCTCCCGAACGACTCGGAGCAGCTCGGGCCGTATGTGAGCGGCCTGCGGCGCAGAGCCCTGCAGGCCGGCGAGCTGTCCGCCGTCAGGACCTTCTCCGACCAGTTTCTCCTCAAGTTTCTGCGGGCCAGAGACTTGGACGTGGAGCTCTCTCTGAAGCTCTTACTGAACTACCAGCGGTGGCGGAGGGAGAGTCCTGAGATCagcacctgtctgtctccctcctcgGTGCTTGGCCTCCTCAACACAACATACCACACCGTCCTCCCCCAGCGGGACCGCACCGGCAGCAGGGTGCTCATCTACAGGattggTCAGTGGATCCCGAAAGACTGGTCGGCCTTCCAGGTGTTCAGGGTCAGCCTGATGacatcagagatcatctccatGGAGACGGAGACGCAGAGAAAGGGTCTGAAGGCCATATTTGACTTGCAGGGGTGGAGTTTGGGCCACGCCCTGCAGATTAACCCTTCCCTCGCCAGAAAGATATCCTCTGTGCTTTCGGACTCTTTTCCACTGAAAGTGAGAGGAATCCACCTGGTTAACGAGCCAATGTTCTTCCGGCCAGTCTTCGCCATGATTCGTCCCTTTCTGCCAGAAAAGATCAGACAGAGGATCCACATGCACGGCGCTGATTTCCACAACACTTTGAGCGACTTCTTCCCCCCGTCCGTCCTGCCACCAGAATACGGAGGGGAGGGGCCCGGCATAGAGAGGGCCTGTCAGGACTGGACCAATAAGCTGCTTCAATCAGAGACGCTCCTGCAGCAGATTGCCTCTCACCCAACAGGCGACATCGCCGTTACTCCTGAGGACTCCTTGATCTCCGAGGAAAGGGGAGAATGAGAGACTATTCGGATCACACCTACACGCTGCTGTTTTTTCGTCCTTCCTCGGCTGGGGGCCTCCGCTCTGGCGCCCTGGTGCTGCCAGCCAGCCCGGCTCCTTACCCTTGTCGATCGGTGGAAACTTCAGCGTTGTCACTTAAATGACAATTTGACAATGATTATTTAGTATACATTGAAAGACGTCTACCGGAGGGAAGAGGAGCGGGGACGGCAATTCATTAAGGATACGCTGGACTTGCTGTGCGGTCTGTTTTCCTCCGAACGTGTCCTCACGCAACTCTCCAAACTCCCTTGTTTCCGTTCTGCTTCAAGCCCTATGACGCAGCCGCACCGACACCCACCCCGCAGTCAGGCGGCCAATCAGCTAACAGTTGTGTTATGACGCGACACGAGGTGTTGGCTGCATATCAAGAGAGCCGTCTGTGCTGCCTTAAAACTTTTCAGCTCTGGTCCATCTGATTGATTTACTGTATGTGCGCCTGTGAGCTGTCTTCCTACATTGCTCATTGAAATCTGACCAAAGCGAGAAGTTGCATCATCTTATTGAAATACacgtttgcttcttttttttttcttccccaaaAGAGACAGGAAGAGGCCGATGCCAATCTCACGTCTGTGTGCTGAGTTTGAGTCCGGGCgtagttagcctagcttaggATGCAGACTGGGAAACGGAGGAAACTCTATCTGGTCTCTGCATGtgtatgtaaaaaagaaaaactgtcaaCACCTCCAAAGCTTAGCCACTGccgatttattatttttattattgtctgGATTCACTGATTAgtcgtttggtctataaaaagtcagaaaatagtaaaagATGACGATCcatgtttcccaaagcccaagatttCGTCCTAAAATgtcttttgtccacaactcaaagatattcagtttactgaaccagaaaatatttacatttaaaatgctgGAATTAGacaatatttccttttttttttttttttttttatcaacgaAAATGACTCAAATTGATGAAATCAAAATAGTTAGCAATTCATTTATAGACTACAACTAATCGatgaattgattaatctttgcggCTCTAAAACATACAAGATACAATGTGTAAATAAAACCActtcagatattttttttaaacgttggAAGGAGCCAAGCTattgattccccccccccccgtgttTACATTAAGCTAGTCTGATCCAGCTCTGTACTTTAAGCACAAACATAGAAGCAGCATCGATGTTTTTATCTtactctttaaaaagaaaatagaaagcaTACGAGCACATATTTCCCACAATGTTGACCTTTTTTTATGTAATAAATAGactttttattcttgtattaagattattttagattttttttcagtgttatCTGAGCAGACTCTTCTCAGTGTTTTGAGGTAGGGACTGGAAACAAAGCTACCTTATCAGGTCTTTTACTTTTTACAGGAATGTCGCTGGATGTCACACcaagacaagtctttttttggttacactttacttgaaggtatctacataagagtgtcatgttcatgaccgtgtcatgtcactcttatgtagataccttcaagtaaagtgttaccttcTTTTTCAGGGCTGGCTGTAGTGTAGTTGTTCTGTAGTTAGACATTAATAACCAGTGGACCTCAGGGATGGAGTGCAAGAAAGGAGATCTGTGTAGCAGCTGCAGGGCACAACCTTCACTCAGAGGACCAAAGAGACAAGAAACCAAGAAAAACCCAGCAGTCCTCTCGGCTGTAAAGTCCTGTCAACTCAATCTAAGCGCCGCTGTGGCTTCCTAGGCATCAAACTCTCAAACCGTTTCCAcaagtgtgtgttttaagttCCCCATGGACAGCAACGCTGCAGATGAGCATGAACCCTGACCTCCCCTCCGACTCAtcactccatccatccatccatccatccagacaGTCATCTTATCTAACCAGCCAAAAACCCAATCCATCCAGTGCTGCTGTCTGCAGGATGGGCCAGATTACTGGGAAATGTGGTCAGTTACTGAATACAAATGACATGGCAGTTTTTTTGTAATCAGTAATGTAATCCATTGGAttacaaagaaaatgtgatctaatctgaatacttttggatgacttcaaaatgaaacattgtAAATCTTGCACcttatgctaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K24455 TTPA; alpha-tocopherol transfer protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152172 lncRNA downstream 25820 7924102 ~ 7926192 (-) True G112887
TU152152 lncRNA downstream 48122 7901580 ~ 7903890 (-) True G112871
TU152151 lncRNA downstream 48251 7901580 ~ 7903761 (-) False G112871
TU152043 lncRNA downstream 93937 7857850 ~ 7858075 (-) True G112779
TU152042 lncRNA downstream 96123 7855672 ~ 7855889 (-) True G112778
TU152162 lncRNA upstream 3372 7964439 ~ 7966305 (-) True G112877
TU152161 lncRNA upstream 6366 7967433 ~ 7969334 (-) True G112876
TU152205 lncRNA upstream 83043 8044110 ~ 8045481 (-) True G112902
TU152206 lncRNA upstream 95535 8056602 ~ 8060033 (-) True G112903
TU152192 lncRNA upstream 178383 8139450 ~ 8192584 (-) True G112897
XM_039814957.1 mRNA downstream 13235 7904205 ~ 7938777 (-) False asph
XM_039814959.1 mRNA downstream 19757 7904205 ~ 7932255 (-) False asph
XM_039814960.1 mRNA downstream 22074 7904205 ~ 7929938 (-) False asph
XM_039814958.1 mRNA downstream 22074 7904205 ~ 7929938 (-) False asph
XM_039814956.1 mRNA downstream 22074 7904205 ~ 7929938 (-) False asph
XM_039815391.1 mRNA upstream 10882 7971949 ~ 8022906 (-) True LOC120568123
XM_039817008.1 mRNA upstream 102016 8063083 ~ 8067449 (-) True tmem70
XM_039814514.1 mRNA upstream 118229 8079296 ~ 8085926 (-) True LOC120567605
XM_039815670.1 mRNA upstream 142334 8103401 ~ 8136557 (-) True cntnap2b
XM_039815671.1 mRNA upstream 179165 8140232 ~ 8146892 (-) True ccr12a
unassigned_transcript_534 other downstream 1724228 6227703 ~ 6227784 (-) True trnas-uga_20
unassigned_transcript_533 other downstream 1725266 6226665 ~ 6226746 (-) True trnas-uga_19
unassigned_transcript_532 other downstream 1730915 6221016 ~ 6221097 (-) True trnas-uga_18
unassigned_transcript_531 other downstream 1731478 6220453 ~ 6220534 (-) True trnas-uga_17
unassigned_transcript_530 other downstream 1732058 6219873 ~ 6219954 (-) True trnas-uga_16
unassigned_transcript_537 other upstream 526400 8487467 ~ 8487539 (-) True trnak-uuu_16
TU152428 other upstream 819385 8780452 ~ 8790042 (-) True G113070
unassigned_transcript_538 other upstream 911367 8872434 ~ 8872505 (-) True trnag-ucc_9
unassigned_transcript_540 other upstream 912343 8873410 ~ 8873482 (-) True trnak-cuu_1
unassigned_transcript_547 other upstream 930864 8891931 ~ 8892004 (-) True trnan-guu_6

Expression Profile