RNA id: XM_039816549.1


Basic Information

Item Value
RNA id XM_039816549.1
length 1293
RNA type mRNA
GC content 0.49
exon number 1
gene id LOC120568826
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 2732606 ~ 2733898 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCAGTCAGATAGTCATTGTCagagaggtgaaatggcgcagaaaggagttcagctggaccAGGAGACCTTCTCTtcttccatctgtctggatctactgaaggatccggtgtctactccctgtggacacagctactgcatgaactgtattaaaagccactggGATGAAGAGGATCATAagaacatccacagctgtcctcagtGCAAGCAGACgttcacaccgaggcctgtcctgctgaaaaacaccatgttagcagatttagtggaggagctgaagaagactggactccaagctgctcctgctgatcactgctatgctggagctgaagatgtaGCCTGTGATTTCTGCACTGGGAGAAAACTAAAAGCACAGAAGTCCTGTCTGGTCTGTTTGGCCTCTTACTGTGATCAACACCTCCAGCCTCATTATGATGTTCCTCCattaaagaaacacaagctggtggagccctccaagaagctccaggagaatatctgctctcgtcatgatgaggtgatgaagattttctgtcgtactgatcagcagcttatctgttatctctgctctgtggatgaacataaaggccacgacacagtctctgctgcagcagaaaggactgagaggcagaaaaagcTTGAGGGGAGTCGACtaaacatccagcagagaatccaggaccgagagaaagatgtgaagctgcttcaacagcaTGTAGAGGCGATCAATGACTCTgctgataaagcagtggaggacagcgagaagatcttcactgagctgatccgtctcctggagaaaagaagctctgatgtggagcagcaggtcagatcccagcagaaaagtgaagtgagtcgagtcagagagcttcaggagaagctggagcaggagatcactgagctgaagaggaaagacgctgagctgaagaagctctcacacacagaggatcacaaccagtttctacacaactacccctcactgtcaccactcagccaatctacatccagcatccatatctGTCCTCTGAGCTACTTTAAGGATGTAACAGCGGCTGTTTTAGGagtcagagataaactacaggaTGTTCTGAGAGAGACGTGGACAAACGTCTCACTGACAGGAAGGACTGTAGGACTGGCGGTAAACAGAAGACAGAGTAGATGAGACCCTCATGTGAGAAGGGACCACAAAGATTTGAGATGCTGGAAGGGGCCCACAGAGAATGCGTATGTACAGGGACCAGAATGTTTTGCTACGCCCCTGCTGACTCTAGAGGATGTTTTAAAGTCACAACAAGAGCCCAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150023 lncRNA upstream 64668 2565867 ~ 2667938 (+) False G111404
TU150060 lncRNA upstream 77173 2654873 ~ 2655433 (+) True G111428
TU150022 lncRNA upstream 96563 2571176 ~ 2636043 (+) False G111404
TU150029 lncRNA upstream 96563 2579853 ~ 2636043 (+) False G111404
TU150028 lncRNA upstream 107277 2565135 ~ 2625329 (+) False G111404
TU150113 lncRNA downstream 3718 2737616 ~ 2742300 (+) True G111455
TU150115 lncRNA downstream 8526 2742424 ~ 2750937 (+) False LOC120568825
TU150119 lncRNA downstream 34906 2768804 ~ 2772238 (+) True G111461
TU150106 lncRNA downstream 53885 2787783 ~ 2789124 (+) False rasal2
TU150124 lncRNA downstream 59686 2793584 ~ 2793985 (+) True G111464
XM_039816589.1 mRNA upstream 43390 2665824 ~ 2689216 (+) True nmnat2
XM_039816090.1 mRNA upstream 267766 2463673 ~ 2464840 (+) True LOC120568517
XM_039816088.1 mRNA upstream 495046 2234821 ~ 2237560 (+) True LOC120568514
XM_039816087.1 mRNA upstream 574041 2154935 ~ 2158565 (+) True LOC120568513
XM_039816079.1 mRNA upstream 723726 2006800 ~ 2008880 (+) False LOC120568507
XM_039816548.1 mRNA downstream 15956 2749854 ~ 2751572 (+) True LOC120568825
XM_039816303.1 mRNA downstream 53881 2787779 ~ 2826854 (+) True rasal2
XM_039815924.1 mRNA downstream 564966 3298864 ~ 3304226 (+) True ptmab
XM_039814780.1 mRNA downstream 654156 3388054 ~ 3398106 (+) True LOC120567769
XM_039815755.1 mRNA downstream 757691 3491589 ~ 3506128 (+) True LOC120568331
TU150017 other upstream 96563 2572188 ~ 2636043 (+) True G111404
TU150031 other upstream 96563 2615577 ~ 2636043 (+) False G111404
TU149996 other upstream 154675 2577121 ~ 2577931 (+) True G111388
unassigned_transcript_508 other upstream 292263 2439709 ~ 2440343 (+) True LOC120568516
TU150110 other downstream 83046 2816944 ~ 2824588 (+) True G111452
TU150157 other downstream 204251 2938149 ~ 2940848 (+) True G111486
TU150165 other downstream 283060 3016958 ~ 3075901 (+) True G111494
TU150153 other downstream 286695 3020593 ~ 3021258 (+) True G111484
TU150236 other downstream 654196 3388094 ~ 3399183 (+) False LOC120567769

Expression Profile