RNA id: XM_039816556.1


Basic Information

Item Value
RNA id XM_039816556.1
length 2175
RNA type mRNA
GC content 0.52
exon number 2
gene id LOC120568834
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 29101010 ~ 29103793 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTGCTCAACTGGCTAAACTGCTACATACTGAGCTCACCATACCTATTAGGCAGACAACAATGTGGTCAGACTCTACGACTGTACTCAGCTGGATCCAGTCCGACTCGTCTCAGTATAAAGTGTTTGTTGGTACGCGTATAGGCGAAATACAGGAGCTCACGGATGCTACTAGCTGGAGGTACGTCTCTTCTGAGCAGAACCCGGCGGATGACATCACACGGGGAAAGTCACTACATCAGCTGACACAACCTACCCGCTGGAAGAATGGACCAGATTTCCTGTATGATCACCCGGCTCAATGGCCAGCTATCCACACGGTAAAATCAGAAGACGCAGGTGAGCTCAGGAAATCCACATTCTGTGGTCAACTCACTGTCCTTGATGCATCTGCTCCTGACCCAACACAGTATAACACCTGGTCTGACCTACTGCAGGCTACTCACCAGTCCCTTCATGGGGCGGCAGCACTCCCTATGTCTGCTTCAGACCGACTGGACACAGAGGTAGTACTTCTTAGTCGAGCGCAGAGTGAGAGCTTCCCTGAAGAAATCAACGCTCTGCAGCATTCTCACCCTGTCCGACCTACCAGTCGTCTCAGTCCACTTTCCCCAGAATACGACCAGACTCTAGGCCTTATCCGAGTTGGGGGTCGTCTCCGTAAAGCTGAGGATCTGCCTGAAGACACTGTTCATCCTATTGTTCTTGCGCCTGATCACCCCATTACACAGCTGTTGGTGCAAGATTATGATGATCGTTTACTCCATGCAGGCCCTGAGCGAATCTTCGCAGAGATCAGAAGGACCTATTGGATCCTCAGAGGCCGCCAAGCCATTAAGAAACACCAGCAGCAATGTGTGGAGTGTCGCAAGTGGCGCAGTAAGCCAGTGATCCCTAAAATGGCAGACCTCCCAGCCGCTCGACTCCGACTCAACAAGCCCCCTTTCTGGTCAACTGGTGTAGACTGCTTTGGCCCATATATGGTCAAGATAGGACGGCGACAGGAGAAACGATGGGGCATTGTGTTCAAGTGTCTCACTACCAGATGTGTTCACCTCGACCTACTGCCTAGTATGGACACCGATTCATTCCTCTTGTCTCTCCGCCGCTTCATCGCAAGAAGAGGGAAACCCTTTGAGATTTTAAGCGACAGAGGCACCAACTTCCGCGGTGGGGACAAGGAGCTTCACGAGGCATTTGAGTCACTTGAACCATCGCTCAGGGAACAGCTAGCAACACAGTGCATCACCTTCAGATTTAACCCGCCTCTGGCTCCAcactttggtggaacatggGAGAGGGAAATTAAATCTGTAAAGGCATCTCTCCAAACCATCCTGAAGGACCAAGTCATCCCTGAGGAGGTACTACAGACCGTCATCATTGAAATTGAGGGCATCCTCAATTCCAAGCCACTAGGCTATGCTTCATCGGACCTTGCAGACCCTGATCCTGTGACCCCTAATCTTCTGCTCATGGGGCGGCGGGATGCATCGCTGCCCCAAGCTGTGTATGGCTCCAGTGATCTGCTAGGACGCCGTCGCTGGCGACACAGTCAGATACTCGCCGACCATTTCTGGGGTCAGTTCACCCGCAAGTACCTCCCTGGTCTCCAACCACGTCAGAAGTGGCGGAACTCAACGACAGACCTAGCTGTGGACGCTGTCGTCATGGTTGTTGACCCACAGCTCCCGAGAGCGCTATGGCCTGTTGGACGCATCACACGGACTATCTACAGTGACGATGGCAAGGTACGCACTGCAGAGATTGACATCAAGGGCAAACTCTACACACGTCCTGTCGCCAAACTGATAGAGCTCCCAAGGATGCCTGACAACGGAGATACCAGCGCTCCCTAGCCCAGCAGTGACTTTACTGTTACTGCGCATTCGTCCCACGAATCCGGGGGCGGCTGTGGAAAACTCCCTGCTGGACTGACGAGCTGACGTCACTCCTTGGACTCACGCATTTGCGCACATGCGCAATTCAGCCATTTCCTTTTGTAGTTCGCTGCAGACACGAGTACAGCTGCTCCTGAAGTTGCACGTTGCTTATATAACATTCTGTTGTGTTGCCGTGTGCGTTATTGAGAACaaaaccacacacaaacacatactagCAACAAGCACTGTATTCACATGCTGGGATTGGAGGTCAATAAATCTGTTGAACTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160076 lncRNA downstream 126861 28973874 ~ 28974149 (-) True G118761
TU160067 lncRNA downstream 139538 28934583 ~ 28961472 (-) True G118755
TU160071 lncRNA downstream 156851 28942003 ~ 28944159 (-) True G118756
TU160044 lncRNA downstream 175046 28925618 ~ 28925964 (-) True G118739
TU160037 lncRNA downstream 207793 28892151 ~ 28893217 (-) True G118732
TU160115 lncRNA upstream 72141 29175934 ~ 29176515 (-) True G118795
TU160118 lncRNA upstream 73689 29177482 ~ 29177758 (-) True G118798
TU160173 lncRNA upstream 303292 29407085 ~ 29407385 (-) True G118851
TU160186 lncRNA upstream 389511 29493304 ~ 29493907 (-) True G118863
XR_005640788.1 lncRNA upstream 404855 29508648 ~ 29510797 (-) False LOC120568801
XM_039815383.1 mRNA downstream 224408 28874875 ~ 28876602 (-) True LOC120568118
XM_039814984.1 mRNA downstream 439861 28659832 ~ 28661149 (-) True LOC120567913
XM_039814646.1 mRNA downstream 453477 28637052 ~ 28647533 (-) True LOC120567677
XM_039815566.1 mRNA downstream 487617 28593338 ~ 28613393 (-) True LOC120568207
XM_039816395.1 mRNA downstream 550650 28498947 ~ 28550360 (-) False LOC120568715
XM_039816391.1 mRNA upstream 183483 29287276 ~ 29292640 (-) True LOC120568712
XM_039816392.1 mRNA upstream 183483 29287276 ~ 29290564 (-) False LOC120568712
XM_039814653.1 mRNA upstream 449666 29553459 ~ 29586063 (-) True si:ch211-153l6.6
XM_039814721.1 mRNA upstream 532310 29636103 ~ 29649692 (-) False LOC120567741
XM_039814720.1 mRNA upstream 532310 29636103 ~ 29649692 (-) False LOC120567741
TU160079 other downstream 114691 28986091 ~ 28986319 (-) True G118764
TU159738 other downstream 1382251 27717551 ~ 27718759 (-) True G118524
TU159739 other downstream 1386620 27713467 ~ 27714390 (-) False G118524
TU159721 other downstream 1425650 27670976 ~ 27675360 (-) False LOC120568986
XR_005640672.1 other downstream 2276440 26819838 ~ 26824570 (-) False cirbpa
TU160179 other upstream 316586 29420379 ~ 29420652 (-) True G118856
TU160248 other upstream 540570 29644363 ~ 29649792 (-) False LOC120567741
TU160542 other upstream 1760453 30864246 ~ 30865494 (-) False LOC120568929
TU160545 other upstream 1760453 30864246 ~ 30876080 (-) True LOC120568929
TU160586 other upstream 2022637 31126430 ~ 31174951 (-) True G119177

Expression Profile