RNA id: XM_039816565.1


Basic Information

Item Value
RNA id XM_039816565.1
length 7317
RNA type mRNA
GC content 0.53
exon number 67
gene id LOC120568842
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 17183162 ~ 17275789 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCGGTTCAGGTTCAGTATTGCGGCGTTTGTCCAGCCTCCTGACGGTGCGCGACTCTCAGGGAACAGAGTGGTTTCCCTTTTTTCTGGAAAGCCCTTCACCATCAGTCTGAGAGCTGGGCTTAAGGGGGAGCAGATCTGAAGGGCCCAGTCTGGCTGTGAGAGACATCCTTAGACTTTAACATATGGCGCTGTAGTATAAGCACACTTTTGTGGATTGTGGAAGGGACCGAATTTGGAAGGGACCGAATTTTATCAAAAGTCGCCCGTTTTCTGTACAGGCGTTCATCATGGAGATGCAAAGGTGGACCACCAGGTGGAAAACGAAAAGGTGGCTATGGGATTCAACGCTAGTCGCTGTGGTCACATTAAGTTTAATTCTACAAGCTGCCAATGTCAGAGCAGCTGAACCAGTAGATGTACTAAAGGCTCTAGACTTCCAGAGCTCTCCTGAAGGAGTACAGAAAACAACAGGCTTCTGCACAGTCCGGAGAGGATCCAAACCCAACATCGCTTACAGAGTGGGAAAACAGGCTCAGATCAGCGCTCCAACCAAACAGCTCTTCCCAGGAGGAGATTTCCCAGAAGATTTCTCCATCCTGTTCACCATCAAGCCCAAGGCTGGCCTCCAGTCCTTCCTACTGTCCATATACAACCAGCAAGGCATCCAGCAGCTTGGCGTAGAGGTGGGCCGTGCCCCCGTCTTCCTGTATGAGGACCAGCATGGCAAGCCTGCCCCGGAGGGGTACCCCCTGTTCCGCTCCATCAACCTTGCTGACGGCAAATGGCATCGTGTAGCTATCAGCGTAGAGAAGAAGAGTGTCACCATCATCGTGGACTGTAAGAAGAAGGTGACCAGGCCCCTTGGCAGAAGCGACCAGGCCGTCATCAACACAGAAGGCATAACTGTCTTTGGCACCAGAATCTTGGATGAGGAAGTCTTTGAGgGTGACATCCAGCAACTGCTGATAGTGGCAGACCCCAGGGCAGCCTATGACTACTGTGAACACTACAGCCCTGACTGTGAAACCCCCAACCACCACGACACCCCCCAGGCTCAGCAACCTGAGGACGAGTACACTAACTATGAATATGGTGAATATGGTGACTACAATGAAGGAGAGTTAACCACTGATGCTCCCCCAACTGAAGGAGCCAAGACTGAGACAAATGTGGGTGGAGACTACTACACGGGTGAGTATGACTACACCACAGTGGacgaatcgattttttttttttttttcctatttgtACCATggaacccccccccaccccccagcaacacCCTGGATTGATCCCAGAGCTATGAAGGGGAAATAGTGGATGATTACATCACCGGTGTGGAACAGGTCGGGGTGGACCCCACCGTTGCTGTGGAAACCGCTGCCCCAGTGGACACCCTAGAGAAGGTGGATCCTGCCACAGACGTGTATGAGTTTAAGGAATACGACCTAAAGGAATATGACAACAAAGAGATTGTAGAGAAGCCATACGAATATGGTGATTATGGCGATTATGGCCCCACTGAAGCCAAGCCTACATCTGCAACATATGAGGACGAGTTTGGTCCTGGAGTTCCAGCAGAGACGGACATCCGAGAAAGCAATGTGGGTGGAGGTCAAAGCTACCtgggagaaaaaggagagaagggTGAACCTGCTGTCATTGAGCCAgggatGCTTATAGAAGGACCCCAAGGAGCCCCCGGCCAAGCCGGTCTTCCTGGTACCCCAGGATTACAGGGTCCTCCAGGTCCCCACGGAGATCACGGTGAGAGGGGTCCTCCAGGGCGTCCTGGTCTTCCTGGTTCAGACGGTATTCCTGGGCCTCCAGGTACCATTCTGATGCTTCCATTCCGTGCGGGCGGTGAGTCACACAAGGGACCTGTGGTTTCAGCTCAAGAAGCTCAGGCTCAGGCCATCCTTGCTCAGGCTAGGCTGACCATGAGAGGTCCTCCAGGGCCAGTGGGCATGGCAGGAAGATCTGGTCCTGTGggaGGTCCTGGAGCTCCTGGACTTAAAGGTGACAGTGGTGACTCCGGACCACAGGGACCCAGAGGTCTTCAGGGTGCAACTGGTCCACCAGGGAAAGCAGGAAAGAGGGGTCGTAATGGAGCCGATGGTGCTCGAGGAATGCCAGGAGAGGCAGGGACCAAGGGTGACAGAGGTTTTGACGGCCTCCCTGGTCTTCCTGGAGAAAAAGGGCATAGAGGAGAACATGGTTCTACAGGACCTCCAGGACCTCCAGGAGAGGATGGCCCCAGAGGTGAAGATGGCCAGGTTGGACAGAGAGGTGTGGCTGGAGACAGTGGTCCTCGAGGTTTGCTTGGCCCCAGAGGGTCTCCAGGTACTGGTGGACAGCGTGGTCTTCCTGGAATTGATGGGCAAGCTGGTCCCAAAGGAAACATGGGTCCACAAGGAGAGCCGGGACCTCCTGGGCAACAGGGTATGCCTGGTCCACATGGTCTTGTTGGTCCTCAAGGTCCAATCGGGCCTCCTGGTGAAAAAGGACCTCAAGGGAAACAAGGTTTGGCTGGCCTTTCTGGTGCTGATGGCCCTCCTGGTCACCCAGGAAAAGAAGGTCCTCCAGGCGAGAAAGGAGCAGCTGGTCTTGCTGGTCCTATGGGATCCATTGGCTACCCTGGACCTCGTGGTGTGAAAGGTGCTGAGGGAATTAGAGGCCTTAAAGGTGGCAAAGGAGAAAAGGGAGAGGATGGATTCCCTGGCTTCAAAGGTGACATGGGTCTCAAGGGTGACAAGGGTGAGGGTGGTGTATTAGGACCCAGAGGAGAAGACGGTCCCGAGGGTCCCAAGGGCAAGTCAGGACCCAATGGAGAAGCTGGTCCCTTGGGACTAGCTGGAGAGAAGGGAAAACTTGGAGTCCCTGGATTGCCTGGGTACCCTGGTCGACAAGGCTCCAAGGGCTCCAATGGCTTCCCTGGATTCCCCGGGGCGAATGGCGAGAAGGGAGCAAGGGGAATCGCTGGCAAAGCAGGCCCTAGAGGTCAACGTGGCCCAACGGGTCCACGTGGTGGGCGTGGTGCTAGAGGACCAACAGGAGCGCCAGGTGCAAAGGGCACCTCAGGCAACGATGGACCAGGGGGCCCACCAGGAGAGAGGgGACCTCAAGGACCACAGGGACCCGTCGGTTTCCCCGGACCTAAAGGACCCAATGGCCCCCCAGGAAAAGATGGGCTGCCTGGTCATCctggacagagaggagagacgGGCTTCCAAGGAAAGACAGGACCTCCAGGACCTGGAGGGGTGGTTGGACCACAGGGCCCAACTGGAGAGACAGGACCTAGCGGAGAGCGAGGACACCCAGGTTCGCCTGGTCCACCTGGTGAGCAAGGTCTACCTGGAGCTGCTGGAAAAGAGGGTGGAAAGGGTGATCCAGGTTCTCAGGGTCCTAGTGGCAAGGCAGGACCTGCCGGCCTACGGGGCTTCCAGGGTGCAAGAGGTCTTCCAGGGGCCATGGGTCCAGCTGGCTTAAAGGGAGGAGAAGGGCCTCAGGGTCCCCCCGGCCCCATCGGTTCTCCTGGAGAGAGAGGTGCTGCTGGCCCTGGAGGTCCCATTGGTCTAGCAGGACGCAATGGACCCCAAGGACCACCCGGCCCTGCTGGAGAAAAGGGCGGCCCTGGAGAGAAAGGTCCCATGGGCCCTGCTGGCCGTGATGGCATTCAAGGTCCTGTTGGTCTTCCTGGTCCGGCTGGTCCTCAGGGTCCCCCTGGAGAGGACGGTGACAAGGGAGAAGTTGGCGGACCTGGACAGAAGGGAAGCAAAGGAGACAAGGGTGAACTTGGTCCACCAGGCCCAAGCGGTCTTCAGGGTGTGGTCGGAGCTCCCGGTCCAGCTGGCAGTGATGGTGAGTCTGGACCGAGAGGACAGCAGGGTATGTTTGGCCAGAAAGGAGACGAAGGAGCCAGAGGATTCCCCGGTCTACCAGGACCCATCGGACTACAGGGTTTGCCCGGCCCTCCTGGTGAGAAGGGAGAGAATGGAGATGTTGGACCAATGGGTCCACCTGGTCCTCCTGGCCCCAGAGGTCCTCAGGGTTCCAGCGGTGCCAACGGAGCTCAAGGTCCTCCCGGTGGTATTGGTGCAATGGGAGGTGTTGGTGAGAAGGGAGAAACCGGTGAAGCTGGCAACCCAGGATCAGTTGGAGAGCCTGGGATTGCAGGACCCAGAGGAGAGACTGGTGAGAAGGGAGAAACCGGGCCACCCGGAGCTGCTGGACCCGCCGGCCCCCGTGGACCCTCTGGAGATGACGGTCCCAAGGGCAACCCCGGTCCTGTCGGCTTCCCAGGAGACCCTGGTCCCCCTGGTGAGCCTGGTGCTGCTGGTCTTGACGGTTTACCAGGTGACAAAGGAGACGATGGAGAGGCCGGACAACCAGGCCCTTCAGGTCCATCTGGTGAGGCTGGAGTACCAGGACCTCCTGGCAAAAGGGGAACTGTTGGACCAGCAGGTCAGGAGGGCAGACAAGGAGAAAAGGGATCCAAGGGCGAAGCTGGAGCCGAGGGCCCTGTTGGGAAAACTGGACCTGTGGGACCTCAGGGGACTGCTGGAAAGTCTGGTCCCGAGGGACTGCGTGGAATTCCTGGCCCTGTTgGTGAGCAAGGACTGCCTGGTGCTTCTGGTCAAGATGGCCCACCAGGACCTATGGGACCCCCTGGACTTCTTGGTATGAAAGGTGACTCTGgaggaaagggagagaagGGTCATCCAGGTCTTATCGGTCTGATTGGTCCTCCTGGTGAGTCTGGAGAGAAGGGAGACAGAGGATTGCCTGGACCTCAGGGTACTGCAGGTGGCAAGGGTGATGCTGGTGGTACTGGTCCCCAAGGTCCTCTCGGTCCTCCTGGTCCCCCTGGTCTTTCTGGCCCTCTAGGACAGAAGGGTTCCAAGGGATCAACCGGTTCAGCAGGTCAGAAGGGAGACACTGGACTGATTGGACCACCTGGACCACCTGGTCCACCCGGTGACATCATCCAGCCACTGCCCATCCAGCAGGCTGCCAAAAGGACCAGACGGCAAGCTGAGAAGCAGGGAGACAAGGCATTGGCAGACAAGGCATTGGCAGACTATGGCGTAGATGGCCTCGGTATGGAGGGAATGGAGGATGTCTTTGGATCCCTCAACAACCTCAAACAGGACATTGAACGCATGAAGTTTCCCATGGGCACCCAAGACAATCCTGCCAGGACCTGCAACGACCTGCACCTCAGCCAGCCTGACTACCCAGATGgTGAATACTGGATTGATCCAAACCAGGGCTGCATAGGAGACTCCATCAAAGTGTTCTGTAACTTCACAGCAGGCGGAGAAACGTGTATCTTCCCAGATAAGAAATCTGTAGGAGTTAGAATATCCAACTGGCCCAAGGAGTCTCCAGGTTCATGGTTCAGTGAATTTAAACGTGGCAAAATTTTGAGCTACGTTGACATGGCAGAAAACACCATCAACACAGTGCAGATGACCTTCCTGAAGCTGCTGAGCTCCTCAGCACGGCAGAACTTCACCTACATTTGCCATCAGTCCGTGGCCTGGTACGATGCCAAGGCCGACAACTACGACAAGGCGCTGCGCTTCCTGGGCTCCAACGATGAGGAGATGTCTTACGACAATAATCCCTTCATCAAGCCGCTGATGGACAACTGCTCGCTGAAGCAGGGCTATTCAAAGACTGTGATGGAGATCAACACTCCCCGCATCGACCAGTTGCCCATCATTGAcgtcatgctgaatgactttgGGGAATCCAACCAGAGGTTTGGCTTTGAGGTGGGCCCTGTCTGTTTCCTCGGCTAGACACACACCTACTCCCCGCTGAAGGACAGGGTCAGAGGGTACATATTAACACCCACATGCTGAGATCCGACAACCTTTACCTTCTCTCCCTGTGAAGCAAAAAaacctgtgttttcttttgttgccCGAGAAGATCCACTCAAGCCCGGAGAAGAAGAGTGCCCCTAGGCCCTGTCATGAAAGCGCTGACCAGGGGAAACTACTCCTCGCCCTTGTAGGGCCAGAATCACATGACTTTAACTTACATGTTGTAATGGGAGTGACATCAGGAAAAGGACATTTGATGCCGTGGCGTACAGTGGCGCACCTTCGGCAACAGAGAGAGGATCCACTCACCCCAAGCCCCATCCTCCCTTGTCCTCCCCCTCCCACCACGCCTCCCTCTCTGGATGCTCCAGGTGCTGCTCTGAATAAAACCACAGAGGTGCTTTTGTGCAGAATCACAAAACACTCAAGGTGCTACAAAAAGTGCTTTTtgataaaactgtaattattattattattattgtgtacaATATTGTGCCTTTCTGAATCCACCCTAAAATCTTGCATGTTCCCCAGCTCTTAAGtttaaataagtatttggtAAACAATATAGAAATAAATCTAATGAATATAGTTGATGTGTGTTGAAAACAAATTTGCTAAAAAGAATATCTATTGAAAACATTCCAATTTGTAAAGTACAAAATAATCCTTTTGTAAATAATATAACTTTCAATATTTGATTTTTATGAGAGCTAACACAACTGGATCATAAAACACAACTCTAAAAGCATTCTGTCTTTTTTCATGACAATGACACCAGTTGGTATGTCCATCGGGATATTAAGCCATAATAAAATGATATagtaatataaatattttaagaaaGAGCTTATTCTTCCAAACCTTATTCACCCAGATGTTATATTGTACCTcagtttcttttaaaaaatgtggACATATTTGGCTCTTCACCCGTGTTTATATATTGATAACACAATCAAGTTTAAACATTATTTGTGGTGGCTAACTTACAATTTATTTTCTGTGGAGTTAAATTTGTCCAATAGTGTCCAAAAGCTCTGTTGATTTTCTTATTTGTAATGAACAAAATGTTTCATGTGCCTTGAATTgttcattcaaaaatattaaaactGGATTCTGAAAAATGCCTGTATTGGATTGTTGGCTATTTGAGTGCAGAAACGATTAATGTTCTTTTTGTGATTCTGCGCTGCCCTATACATATCTCCTTCCTTCGCCATTTGGAGGATTAGTGGCTCCAAGTGTTGCCGTTCATGTGATTGATTCTGCTGAGCCCAGGTGCTGTGAtctctttcactttctttctctGAATCAAATTTGACTTTGATCATGATATGTTTGCATCTCCACCTCTCTAGCTTAAAGCTATGATAGCATAGACTTCGGAGCCGCTTTCAAACCtgtgtaattacagtatgtttACAACCtatgtacaaatgaaataaatgtttggTGCTTTGCCAAATGCACATTGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155705 lncRNA downstream 18467 17164369 ~ 17164695 (-) True G115435
TU155704 lncRNA downstream 41945 17137754 ~ 17141217 (-) False G115434
TU155703 lncRNA downstream 43644 17137754 ~ 17139518 (-) True G115434
TU155702 lncRNA downstream 47349 17133873 ~ 17135813 (-) True G115433
TU155699 lncRNA downstream 60104 17122722 ~ 17123058 (-) True G115430
TU155728 lncRNA upstream 26475 17302264 ~ 17302558 (-) True G115458
XR_005640743.1 lncRNA upstream 80562 17356351 ~ 17357209 (-) True LOC120568661
TU155842 lncRNA upstream 272431 17548220 ~ 17552950 (-) True G115563
TU155848 lncRNA upstream 297108 17572897 ~ 17573129 (-) True G115568
TU155850 lncRNA upstream 297674 17573463 ~ 17574125 (-) True G115570
XM_039816998.1 mRNA downstream 6751 17165891 ~ 17176411 (-) True LOC120569119
XM_039814525.1 mRNA downstream 141699 17039804 ~ 17041463 (-) False ly97.3
XM_039814640.1 mRNA downstream 160769 17020735 ~ 17022393 (-) True LOC120567671
XM_039815851.1 mRNA downstream 167537 16847810 ~ 17015625 (-) False LOC120568369
XM_039814936.1 mRNA upstream 21266 17297055 ~ 17298924 (-) True LOC120567855
XM_039816885.1 mRNA upstream 216498 17492287 ~ 17542090 (-) True LOC120569062
XM_039816886.1 mRNA upstream 216498 17492287 ~ 17542089 (-) False LOC120569062
XM_039816888.1 mRNA upstream 216498 17492287 ~ 17542088 (-) False LOC120569062
XM_039816887.1 mRNA upstream 216498 17492287 ~ 17542088 (-) False LOC120569062
TU155671 other downstream 74258 17039800 ~ 17108904 (-) False ly97.3
TU155672 other downstream 138100 17043126 ~ 17045062 (-) True G115406
TU155670 other downstream 141686 17039800 ~ 17041476 (-) True ly97.3
XR_005640632.1 other downstream 380898 16756331 ~ 16802264 (-) False epb41l3b
TU155525 other downstream 543350 16637108 ~ 16639812 (-) True G115312
XR_005640621.1 other upstream 1207367 18483156 ~ 18494488 (-) False sppl2
TU156258 other upstream 1441093 18716882 ~ 18718544 (-) True LOC120568909
TU156342 other upstream 1569116 18844905 ~ 18846277 (-) True G115941
TU156358 other upstream 1656185 18931974 ~ 18935477 (-) True LOC120568972
TU156517 other upstream 1946002 19221791 ~ 19222726 (-) True G116084

Expression Profile