RNA id: XM_039816569.1


Basic Information

Item Value
RNA id XM_039816569.1
length 1382
RNA type mRNA
GC content 0.48
exon number 8
gene id pigr
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 12109272 ~ 12113247 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTGGCATTGCGGAACCTGGAGTCCATGTTTACACAAGGGAGAGAGTTCACTTGGTAAACCTCAAACTGACGGCGAAACATGCTGCAACCCTTTCTAATCGTCCTCAGCCTGTTACCATGGTTCCCAGCCTTCCTCTGCAGGGTAACCACCGAGGGGGAGCATGCAGTTATGGAGGGTCAACCTCTCACAGTCCCGTGTCATTATGGGCCTCAGTATGCCGGCTATGTAAAATACTGGTGTCAGGGGAAGATGAGGGAGTTCTGCACCAGTTTAGCTCGAACAGATGAGCCCCGTTCGGCCAATCCAGCTGAGGAGAAAGTGAGCATCTTTGACGACCCGGTCCAGCTGGTGTTCACTGTGACCATGAGCAACCTGAAGGAGGGGGACTCTGGGTGGTACATGTGTGGCGTGGAGATAGGTGGTGCGTGGAGCGCTGATGATGTTGCTTACACTAACATTAAGGTCATTCATGGCATGTCAGTGGTGAACAGCCGCCTGATTGGGGAAGAAGGGAGTAGTATCACAGTTGAATGCCACTACAGTGAGAGATACAGAGAAAGCGAGAAGAAGTGGTGTCGGAGCGGAGACTGGAGCTCCTGTCTGCTGACAGGTTCTGACGGGAGCTACGAAGACACTTCCGTGGCCATCAGCGATGACAGAACTAGGACTTTCACTATAACCTTAAAGAAGCTGCAGATGAGAGATACCGGCTGGTACTGGTGTTCCGCAGGACAGCAGCAGATAGCTGTGCATGTGCTGGTCACACCCCGACCCACGACTGCAGTATCTGTGACATCCACACCTAAAACAAGTCAGTCTGTTGCATACCTGCCTCCACCCAAACCCATCACTAAGGAGTCCTGGAACAGTCACAGcCACATCTTGGAGTCGTTGCTGGTGTGTGCTTCTATAATGCTCCTTGTGGGCTTGGTCATATTGGCGAGAAAATTGTGGAAACAGCACAAGCAGGATCCTGTGCTGAGACAAGTTAAGGAGATACAAGCAAGGCACAATGAGTACTCGGGTGACCTGCAAAACTCTGCTGTCGTTTTCCTTAACAGGGACTCCCAGGATGTACGTATCTACTGAGCTTTATCAGTGCAGGGTTTATTTTTACTCTTTGTAACCGAATTTCATTTTTTGTCAGTTCACTGCACACAGCACATGCTTTATTTCCAGTGTTTTTTGTATATAACATACCAGCACAACACATGTTTTCTGTTCACTGCTTTACATAATGCAACTGCTATAGGCTGGAGATCTGATGTTATATGTGATATTATGTAATCATCGTAgtgtattgtatttttgttgaaattTGGGGATTTTAGCAAATTGGTGGGGTTTACATTCTGCAATTAAACTTGTACTTTTTGCTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640757.1 lncRNA downstream 6020 12100742 ~ 12103252 (-) True LOC120568725
TU153297 lncRNA downstream 50156 12020953 ~ 12059116 (-) True G113731
TU153295 lncRNA downstream 73523 11991744 ~ 12035749 (-) True G113729
TU153285 lncRNA downstream 150611 11958450 ~ 11958661 (-) True G113722
TU153268 lncRNA downstream 233244 11795705 ~ 11876028 (-) True G113708
TU153326 lncRNA upstream 13710 12126957 ~ 12128145 (-) True G113755
TU153347 lncRNA upstream 49914 12163161 ~ 12175582 (-) True G113772
TU153376 lncRNA upstream 95285 12208532 ~ 12208970 (-) True G113799
TU153383 lncRNA upstream 115732 12228979 ~ 12229338 (-) True G113806
TU153403 lncRNA upstream 240596 12353843 ~ 12356081 (-) True G113810
XM_039815501.1 mRNA downstream 578467 11527843 ~ 11530805 (-) True si:ch73-382f3.1
XM_039815499.1 mRNA downstream 584435 11519469 ~ 11524837 (-) True selenop2
XM_039816321.1 mRNA downstream 607534 11500364 ~ 11501738 (-) True LOC120568667
XM_039815056.1 mRNA downstream 646660 11390884 ~ 11462612 (-) False zswim5
XM_039815055.1 mRNA downstream 646661 11390884 ~ 11462611 (-) True zswim5
XM_039816570.1 mRNA upstream 3555 12116802 ~ 12122078 (-) True dad1
XM_039815524.1 mRNA upstream 18190 12131437 ~ 12152081 (-) True tgm1l1
XM_039816553.1 mRNA upstream 63610 12176857 ~ 12207670 (-) True rem2
XM_039815464.1 mRNA upstream 116874 12230121 ~ 12328040 (-) True carmil3
XM_039816603.1 mRNA upstream 247736 12360983 ~ 12514630 (-) True LOC120568866
unassigned_transcript_557 other downstream 1220320 10887089 ~ 10888952 (-) True LOC120567758
TU153067 other downstream 1220425 10887007 ~ 10888847 (-) False LOC120567758
TU152848 other downstream 2598791 9507048 ~ 9510481 (-) False LOC120568397
TU152847 other downstream 2613520 9401742 ~ 9495752 (-) False LOC120568397
TU152846 other downstream 2705660 9401742 ~ 9403612 (-) False LOC120568397
TU153382 other upstream 104815 12218062 ~ 12218267 (-) True G113805
TU153584 other upstream 487933 12601180 ~ 12602909 (-) False nedd8l
XR_005640810.1 other upstream 647668 12760915 ~ 12768625 (-) False LOC120568934
TU153973 other upstream 971314 13084561 ~ 13088563 (-) True G114152
TU154602 other upstream 2500366 14613613 ~ 14615772 (-) False LOC120568687

Expression Profile