RNA id: XM_039816572.1


Basic Information

Item Value
RNA id XM_039816572.1
length 3910
RNA type mRNA
GC content 0.51
exon number 19
gene id dhx30
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 22226179 ~ 22236510 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

taattaactcctttatgtagttctactggaacatagggtcagtttcagcaaatatgacagaaagttagttttacaagtcttacctactgcatctttaatataGCCGGAAATTGATAATTGAGGGATTTCACAAATATTCACAATGTATGTCATGCACCCCTTAAAATCTGCTTTTCATCAAGAGAACGTGAGCCCAAATCTCCTGAAGGAGTTTCCAGATCCTAAAGGTCTATTGAATAACACCCTCTCCCGTTCACTGGGAGTCAGCGACCTTTCCCAGCTCATCCAGTACAGCTGCACGGAAAATGCGGGTGTCAAGAaagccactgtcacactgctgTGGCCCTGCAAGATTGAAGAGGAGGGGTTTGCCTCCAAGAAGATCGATGCAGAACGatttgctgcagctgctgcttgtTTCAAGCTCAGAGAAATGGGTGTCATTGGTCCAAATAATCAGCTCCCCGGGAGGAGAACTGGCAGGGTGACGGGAGGGCTACAATCACACCTTCATGATAACGAGGAAGACTCATTGACAGAGAATGTCCTTGTGTCTAGAGCGAAAGCAGATGAACGAAACCAATGGCTGCCTTCCAAAGAAGACCACTCCAACATCTCTGAAGCTCTTTCCCTCTTTCCACAACCTAAATCTCTCCTCACTAGGGTCATCCAGGTGGCCACGTCATCCAACAGAATCAGGGAGCTAATGCAGTTCAGAACAACAGGAGGAAAGCTAAAGAAGTGTGACCTGACTCTGCACTGGCCAGAAGAGATGACGTTCTCTGCCACAGCGAGCAACCGAGTGACCGCCGAGAAGAGAGCTGCAGCTCTTGCCTGCATGAAACTGAAGGAGCTGGAGCTGCTGGATAAAGACAACAACCCGCTCAGTCATGCCAAGTACCACCTAGAGAAGGTGAGGGAGGctggagagcgagagagacgcCCTCTCCCCCTGGAAGTTCCAGAATACCTGAAGGGACACATGAGAGAATACCTCGCACAGTACCCGGTGGCAACAGAAGTACAGAAGCTTTGGGAGGAGGAAGAAGCGAGAGGACAGCAGACAGTGAaccaggaggatgaagaggaagaggaggacttGACAGATGCCATTACAGGCAGGCCGTACAGGCCTCTGTCTGAACAGGACGCCCGGCGGCTCAGCACCCACCTGCAGGAGAAATGGGAGACAGCGAACCCTGGGCTGAGTGTGGAGCTCCCAGTCGATGCCCACCGTGAGGACGTGATCTCGGCAGTGCAGTCGTCCAGGGTGGTTGTGATCGCTGGTGAAACGGGATGTGGGAAAACGACACGGATCCCCCGCTTCCTGCTGGAGGAGTGTGTGAGAAGTGGTGAGGGGGCTGAGTGCAACGTCCTGGTCACCCAGCCTCGTCGGATCAGCGCCGTGTCCGTGGCCCATCGTGTTGCTCTTGAAATGGGTCCAGCTCTAAAAAACTGTGTGGGATATCAGGTGAGACTTGAGAGCCGACCACCAGAGCAGAGCGGAGGAGCCTTACTCTTCCTCACAGTGGGTGTTCTGCTGAGGAAGCTGCAGTCGAACCCGTCCCTGAAGGGAATCAGCCATGTGGTGGTGGATGAGGTTCACGAGAGGGACATTAACACGGACCTGCTGCTGGCTCTGCTGCGCTCCAGCTTAAAGGAGAACCCTGACCTACGAGTAGTGCTTATGAGCGCTACTGGGGACAAGCAGAGGCTGTCCCACTACTTTGGGGGCTGCCCAATTGTTAAAGTACCTGGATTCATGCACCCAGTGAGGGACCGATACCTGGAGGATGTGCTGAGAGAGATGGGACGCCCACTGCCAGTCCAAAAGAGAGTGGAGACAGAAAAGCCGGGAGGAAGAGATGATGTTGCACCAGATATAGATTTAATAGTTGATGTAATCGAGCACATTGACAGACGTGGAGAACCAGGTGCAGTGTTGTGTTTCCTCCCTGGATGGCAGGACATCAGGGCTGTTCAAGAGAAACTGGAGGGGAGGCGCCACTTTTCCTCAGGCTCACAGATGATCGTACCATtgcaTTCTAGTTTATCAGTAGCAGACCAGCAGGCAGTGTTCCAGCGCCCCCAAGTGGGCCAGAGGAAGATTGTCCTCACCACCAACATTGCTGAGACCTCCATCACCATAGATGACATCGTCCATGTGGTGGATGCAGGAACTCACAAAGAACAAAATTATGACCCACGGACTAAGGTCTCCTGTCTGGACACAGTTTGGATATCTCATTCCAATGTCACTCAGAGAAAAGGGAGAGCAGGGCGATGTCAGCCAGGACATTCCTACCACCTGTTCCCACGGAAGCAGCTGGAATCCATGACTCCCTTCCCCATCCCTGAGATCCTGCGCACCCCGCTGGAGAGTTTGGTAGTGCAAGCCAAAATCCACAGTCCTAACTGCAAGgCTGTAGATTTCCTATCACAAGTGTTGGACAGTCCAGAGCAAAAAGCTGTGAGAGATGCTGTCCAAAATCTACAAGATATTGGAGTTCTGGACAAGACCGAAACCCTAACGCCTTTAGGAGAGCGCGTCGCCTGCATGTCGTGTGACCCTCGCCTTGGCAAAGTGCTGGTCCTGAGTGCCATGTTCAGATGTGTTCTGCCCATGCTGTCTGTAGCTGCCTGTCTGACCAGAGACCCTTTTTACAACAGCCTGCAGAACAGAGCTCTTGTTAACAAGGTGAAAGATGCTCTGAGCGGCTCCAGCTTCAGCGACTATTTGGTGTTCATCAGAGCTGTATCGGGCTGGAGGAGAGTTCAGCAGGAGGGGGACAGAGAGGACCGGGATGAATATCTGAACAAACACTCACTGTCCAAGTTCAGCCTTCGTTTTATCAATGGTCTCATCTCTCAGTTCAGCGAGAACCTGCACGAAGCAGAGCTGGTGTCTCGCGCCAATGAGTGCCAGCGTCACACTTCTCTCTACAACGAGCACAGCAACCAAGATGAGCTGCTTAAAGCTGTACTCCTGGCTGGACTCTATCCCAACCTCATTCAGGTGAAGAAAGGTGTTGTGACCAAAGGAGGGCGCTTTCGCCCCAACAGAACGTGTTTCCGCACACTCAGTGGGCCCGTACTGCTTCACCGCGCCACAGTGAACAGGGGAAAAGAAGATCTCCCTAGTCGCTGGTTGACCTTCTTTAGCGCTATCCAGTCCAACGGGAACGTTTTCATCAGAGACTCTTCTACAGTTCATCCACTCGCCCTGCTGCTGCTCACAGACTGTGATCTCACAGAGACCGTGAACGGAGACCGAGTGGAAGTGTCATTTTCTGGACGCTCTCTGGTGCGCTGCGAGTTGTCAGTTGGGACCTGGGAGCTGCTGTGGGAGCTACGCACTTCCATTCAGACCATGCTCTACCGCAACCTCAACAATCCCAGAAACGCAATCACCAACTCTTCTCAAGACGGAAAGCTCCTCTCCTTACTCGTAGAGCTGCTCAACAATACAGACTTGAACCCTTTTGCACAGAACCACAACAGTGACAGTGAGGTGGATTGATGACATCGAGCACTTTCTACACATGTACGTTGGATCTGCTGGCTGGTACAAAGGAACCAATGAATGATGGtcatttgtgtgttgtttttttacaaagagTCTGAGAACTTGAGTCAGTTAGTGTGTTGGACTCTTGAAGAGCAGAAATCCACAGTGGACTGTTGTATGCTATTTATTGTTGAGGCAAATGATGAACTCCTTTTGTGGTGTGAGGAAATCCATTGGTTTGACTTTTGGACTGTGGTTTATTATGGTTATCTGCTTTCTGAAAAGCAGAAGTTGAATTTTACTCAAAAGAATCATTAGCCAAAGGTCACTAAAACCGACTGCATgcaataaatgtaatatttattgCAATAAATATTCACATGCCAACATGAGGAAAATGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640797.1 lncRNA downstream 20188 22181964 ~ 22205991 (-) True LOC120568857
TU157630 lncRNA downstream 25199 22195324 ~ 22200980 (-) True G116954
TU157587 lncRNA downstream 47645 22178293 ~ 22178534 (-) True G116922
TU157550 lncRNA downstream 223321 21997794 ~ 22002858 (-) True G116893
TU157461 lncRNA downstream 415033 21810862 ~ 21811146 (-) True G116832
TU157760 lncRNA upstream 393386 22629896 ~ 22632268 (-) True G117052
TU157764 lncRNA upstream 434223 22670733 ~ 22674450 (-) True G117055
TU157840 lncRNA upstream 570562 22807072 ~ 22809753 (-) True G117112
TU157848 lncRNA upstream 588863 22825373 ~ 22825583 (-) True G117117
TU157843 lncRNA upstream 596556 22833066 ~ 22834881 (-) True G117114
XM_039816580.1 mRNA downstream 5497 22210822 ~ 22220682 (-) False LOC120568852
XM_039816579.1 mRNA downstream 5498 22210587 ~ 22220681 (-) False LOC120568852
XM_039816578.1 mRNA downstream 5498 22210822 ~ 22220681 (-) False LOC120568852
XM_039816577.1 mRNA downstream 5499 22211937 ~ 22220680 (-) False LOC120568852
XM_039816576.1 mRNA downstream 5500 22211937 ~ 22220679 (-) True LOC120568852
XM_039816574.1 mRNA upstream 1978 22238488 ~ 22247588 (-) True wrnip1
XM_039817032.1 mRNA upstream 187183 22423693 ~ 22425935 (-) True foxc1a
XM_039814630.1 mRNA upstream 195135 22431645 ~ 22434977 (-) True LOC120567665
XM_039814728.1 mRNA upstream 199950 22436460 ~ 22437734 (-) True foxq1a
XM_039816279.1 mRNA upstream 230299 22466809 ~ 22479964 (-) True irf4a
TU157096 other downstream 1215610 21008049 ~ 21010569 (-) False higd1a
TU156767 other downstream 2430470 19793834 ~ 19795709 (-) False xcr1b.1
TU156578 other downstream 2760799 19464700 ~ 19465380 (-) True G116138
TU156517 other downstream 3003453 19221791 ~ 19222726 (-) True G116084
TU156358 other downstream 3290702 18931974 ~ 18935477 (-) True LOC120568972
TU157655 other upstream 25488 22261998 ~ 22263498 (-) False G116969
TU157659 other upstream 26613 22263123 ~ 22268559 (-) True G116969
TU158039 other upstream 1193856 23430366 ~ 23430992 (-) True G117259
XR_005640657.1 other upstream 1232110 23468620 ~ 23491612 (-) False LOC120568062
unassigned_transcript_560 other upstream 1631442 23867952 ~ 23868025 (-) True trnai-aau_23

Expression Profile