RNA id: XM_039816576.1


Basic Information

Item Value
RNA id XM_039816576.1
length 2235
RNA type mRNA
GC content 0.52
exon number 9
gene id LOC120568852
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 22210587 ~ 22220682 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttctttcactcgTCTGCTGGGGTCGGGTAGATATGGAAGAGTTTGCGGGTCGAAGAGACAACCACAGCCTGCCCGTGAAGAAACGCGCACTCTTCAGACACCGGTGGACTTTATAAACTCAACAGAAGCAGCGGACGTTAACACCTGCCGCGGGGCTTCAAACACCCTCCCTCCGCGACATGGCACTCAGCTCGGGCGGCTGGGCTCCTCCAGCCCCGGTCCCTGCCTCGTCCCAACAGGCTGCATGCGGCGGGCCTGCGCTGACGCCTTGCTGCACTACTGTTTTAATGTCAGTCCGGGTTTCGGTGTGCCATTCAGGGATCCGGCCCCTGTGTCTCCCTGGAGCAGGCAGCGAGGCTCTGCGCCTCCAGCTCAGCATGGACCCGAGCCGGGCCGGAGAGTTCCGACTGGCGCTGCGAGATACGAGCGGAAACCGCAGTGTGtTCATTGCCGAGTTTGACCTGCGCTCGGTGCAGTACGAGGTGAAATCCCCTCGCTGCCATGAGATGCGTCTCGCCGCTCCGCCTCACGACTGCATCCGCTTCAACTTCCGCTGCGACCGCGAGGCCGAGGAGTGGGCCACCGTGGTGATGTCATCACTCAGAGAGGCACATCGAGTTGCAAATATGAACACGTGTGAATCAGATGGCAGACACGAGGACACCGCAGCAGCTATGGAGCAGTGGAGCTCCGCATCGCTGCCGCTCACTGaggagCTGTGCTTGGAGCTCGCCAGGGCGATTGAAGCAGGCGATACTGAAGGGGCTTCACAGCACGCGTCCGCTCTGGCTCGGCAAAAAGCAGCGCTGACGATTCAGCTGTCTGAAAACAACTACGCAGAGGGAGAGATCAGTTTATCTGTGGTAGTGGAGGATGTCTCGTCATCCTGTTGTGTCACAGTGAAAGTCTTTCCTTACATGACCGTGGCTGCACTCAAGCAACAGGTGTTTCTCGAGTACGGTTTCCATCCTCGCGTGCAGCGCTGGGTGATTGGTCAGTGCTTGTGCACCGAGCCGAGGTCGCTGGCCTCCTACGGGGTGCAGAAGGACGGCGATACGGCGTACCTCTACCTGATCTCCGCCCGACAAGCCCGCATCACCCGTCAGCTGTTCCAGCAGGACCTGGAGAGCGCCCTCCTCGCCCCACCACTCCCACCGGGCAACGGCCCAACCTCCCAAGACTGGAGGGGTTACAGCACGCTGCCCTCAAGGCTACCCCACAGCAACCAGGGGAGCACCGGTGGAGGAGGCGATAGACCAGGTGATATCAAAGATGTTCTGGACATTGAGAATCTGCAGCTGAGCGATCATACCAACAAAGCCAGTAAAACACAGCAGACAGAGTGGGCTTGTCCCTCATGCACTTTCATCAACAAGCCTTCCCGTCCAGGCTGTGAAATCTGTGCTACAGCCAGACCTGACGCACACATCCAGCAGgagaaaggaaggagagaggatcGAGGGGAGTTCGGTTTAAGCAGCAGCTGACTGCCCATCGTCGCTGTCAGGTCGCCatgtctcactcacacacacacacgtacacacacacacagactaaggATGATAAACAACTAAATACTCACATAAAGACTATCAAGTGCACTGAGAGTCGTCTGACAGCCGGAGCGATTGAAGCACTGTAGACAGAGCTGCGCTGGTCTAGGCTCAGACGATGAACTGCAGGCAGCGTCCGATTTGACCGGTTATATGGACATGAccatgacatacagtacatctgaATTTGGCCAgctctctttatttattttacatggtgtgtgtgtgtgtgatgcaaaCACAGACGACCTAATATTTATTTTAGGTGAGAGAGTTGATGGACATTTTTTGAATTTGTCGCGCTGAAATTGAGGGAATGTCATACTTTCAGTTTCTGAACTGTGTAGTGAGAGAAAAGGTGACTCCTTGTGCAATACCCTGTTCTGTTTGTTCATTTGCcaaaatgtttgtttgaaaacaaaacaaaatagaagaagaaaaaaaaaaagccatgggTGAGAAGAGGTGTGTCACGTTTACAGGGTTGtcaagtgcttttatttttttataacattGTATTAAGTGTATTATTAACAAAATTCATTGAGTAATTGATGTACATTTTAGCAGTTGATCAAATTTTACTCAATTCCCTGTGAGCTGTGACAGCAGTGGAACGATGTTTTCAGTACATAATGTAAAATCTTGCATTAGCGGAATAAACATAACGGAATTAAACAAA

Function

GO: NA

KEGG:

id description
K20894 SHARPIN; shank-associated RH domain-interacting protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640797.1 lncRNA downstream 5946 22181964 ~ 22205991 (-) True LOC120568857
TU157630 lncRNA downstream 10957 22195324 ~ 22200980 (-) True G116954
TU157587 lncRNA downstream 33403 22178293 ~ 22178534 (-) True G116922
TU157550 lncRNA downstream 209079 21997794 ~ 22002858 (-) True G116893
TU157461 lncRNA downstream 400791 21810862 ~ 21811146 (-) True G116832
TU157760 lncRNA upstream 409217 22629896 ~ 22632268 (-) True G117052
TU157764 lncRNA upstream 450054 22670733 ~ 22674450 (-) True G117055
TU157840 lncRNA upstream 586393 22807072 ~ 22809753 (-) True G117112
TU157848 lncRNA upstream 604694 22825373 ~ 22825583 (-) True G117117
TU157843 lncRNA upstream 612387 22833066 ~ 22834881 (-) True G117114
XM_039815513.1 mRNA downstream 186870 22017305 ~ 22025067 (-) True efcab14
XM_039815512.1 mRNA downstream 196091 22004839 ~ 22015846 (-) True LOC120568177
XM_039815506.1 mRNA downstream 217764 21988812 ~ 21994173 (-) True rpe65a
XM_039815797.1 mRNA downstream 343989 21848903 ~ 21867948 (-) False dtna
XM_039816572.1 mRNA upstream 5500 22226179 ~ 22236510 (-) False dhx30
XM_039816571.1 mRNA upstream 5500 22226179 ~ 22236510 (-) True dhx30
XM_039816574.1 mRNA upstream 17809 22238488 ~ 22247588 (-) True wrnip1
XM_039817032.1 mRNA upstream 203014 22423693 ~ 22425935 (-) True foxc1a
XM_039814630.1 mRNA upstream 210966 22431645 ~ 22434977 (-) True LOC120567665
TU157096 other downstream 1201368 21008049 ~ 21010569 (-) False higd1a
TU156767 other downstream 2416228 19793834 ~ 19795709 (-) False xcr1b.1
TU156578 other downstream 2746557 19464700 ~ 19465380 (-) True G116138
TU156517 other downstream 2989211 19221791 ~ 19222726 (-) True G116084
TU156358 other downstream 3276460 18931974 ~ 18935477 (-) True LOC120568972
TU157655 other upstream 41319 22261998 ~ 22263498 (-) False G116969
TU157659 other upstream 42444 22263123 ~ 22268559 (-) True G116969
TU158039 other upstream 1209687 23430366 ~ 23430992 (-) True G117259
XR_005640657.1 other upstream 1247941 23468620 ~ 23491612 (-) False LOC120568062
unassigned_transcript_560 other upstream 1647273 23867952 ~ 23868025 (-) True trnai-aau_23

Expression Profile