RNA id: XM_039816584.1


Basic Information

Item Value
RNA id XM_039816584.1
length 2634
RNA type mRNA
GC content 0.43
exon number 10
gene id prkacbb
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 22189167 ~ 22200648 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gggggtgggggggcgcaAGCGGTTGAGTCCGTAAAAAAAGTGACCGCTAGCTTCATGTCAACCATACAGACACTACTTACTAGCAAGAGCGGAAATCTTTCCCAGGGAAGAAGGAGAGGGAGCGACAGAGGGAGAGTGAGGGGGGTCGCTGGAAGGGATACTGGACTGCATTTCCCTACGTTTGAACCGACTAAATATTCATATCGGTTTGGGTTTTACCTATTTTTAAGAAGCTCGGGAATATCAGCTGTAGGAAGGTTAACGTGAGCTAGTCACCGCCATCTCCTCTCAGTCGGAGCGACCGCCGTGTCTTCCACACCATGGGGAACGCTGCCACCGCCAAGAAGGGCAACGAGCTAGAGAGCGAGTTTCTAGCCAAAGCCAAAGAAGATTTCTTACGGAAATGGGAATGCCCACCACAGAGCACAACGTGCCTAGATGACTTTGAAAGATTAAAGACCCTGGGTACCGGCTCATTTGGAAGAGTCATGCTGGTGAAACACAAAGGAACAGAGCAATACTTTGCCATGAAAATACTGGACAAGCAGAAGGTGGTGAAACTCAAGCAAATAGAACACACACTAAATGAAAAGAGGATATTACAGGCAGTGAGCTTTCCTTTTCTCGTCAAACTTGAGTATGCATTTAAGGACAACTCCAATTTGTACATGGTGATGGAGTATGTTCCAGGAGGAGAGATGTTCTCACACCTAAGACGAATTGgaaggttcagTGAACCACATGCACGTTTTTATGCCGCTCAGATAGTGCTGACATTTGAGTACCTCCATTCACTAGATCTCATATACAGAGATCTGAAACCTGAGAACCTTCTCATTGACCACCACGGCTACATTCAGGTGACAGACTTTGGATTTGCCAAGCGGGTAAAAGGCAGGACCTGGACGTTGTGTGGGACACCGGAGTACCTGGCGCCAGAAATCATTCTCAGCAAAGGCTATAACAAAGCTGTGGACTGGTGGGCCCTTGGAGTCCTCATCTATGAAATGGCAGCTGGCTATCCTCCATTCTTTGCAGATCAACCCATTCAGATCTATGAGAAGATCGTGTCTGGGAAGGTACGATTCCCATCCCACTTCAGCTCCGACCTGAAGGACCTGTTGAGAAACCTGCTGCAGGTGGATCTGACCAAACGTTACGGCAACCTGAAGAACGGAGTCAACGACATCAAGGGCCACAAATGGTTTGCCACAACAGACTGGATCGCAATCTACGAGAGAAAGGTGGAAGCCCCGTTCATACCAAAGTGCAGAGGCCCAGGGGACACCAGCAACTTTGACGACTACGAGGAGGAGGAAATCCGTGTTTCTTTAACAGAAAAATGTGCGAAGGAGTTTGCAGAGTTTTAGGATGCAAGAACATGGATATATCAGGGAAATAAGGGGATCTTTGCACTCTTCTAAAGACTTGGGATGGAGCAGAGACCATCGTTTTTCAGATCTTCTTCATAGTCCCTTCATTCCATAAGGCTGAATGAGGTCGCCATGATCCTTGGGTGCCGATAACCTCTCACTGTCACGTACACCTGCGTATTAAAGCAGACACACcacgtttttctttttcctttttttttttttttttttttttttgtacctaCCCAccgtttattttatttttttaaattttgaagcAGATAGTCTTGGATGTTatcccctttttaaaatgtgatatTTTTCAATTTATGAGGAAAAACTGAGACAACGGCCAATAATAGTCCACACATTGTAACTGACTTGTCTATGGCTATTCCCTCCAGTCGTCAGTGGTGTATATTTAATGGTCCGTTACAAGTCCACATCACATTGGCTAGTGTAAAATTCTGGCCAGCTTTCAGAGGTAGCATTCGTCCTATGTGCATATCTGTCAGTTTTGTAAGACATTTAAACACGTTGTGTTGAAAGCATGACCAAATAGAAAACGTTGGGTGACACAAGAAGAGAAGTCCTGtcctttctttgctttttgcTTAGAGAGCCAAGTCCTCGTACCCCCACAGAAGCATCCATTCACTGTCTTCTTGGTATTCTGACCCAGGCACCGCAAGCCATTGCGGAAAATGACAAACCTTGTTATATACATTAGTCAAATGCAAATCGAGTTGTTTGTTTGATCCTTTTGGATCCGTTTGTTACATGTGAAATTTGTCATTTGGTATCTAACTATTCTTTTATCACTGTGTCAAACATTATAGTCATATTATCTGCCTATTAAGACCCTTTTGTCATGAGTCTGTGGAACAATGTGACTTCAGTAAATGGTGAAAGTGAAATCCTTTTTAGGATTTTTATCGAGTGTAATGTTAAGTTGAGAAGGTCAGTGTGAATAGTGTTGTGGCTCTGTGCCTCAACATTGTCAgtgaaacctaaaaaaaaatttgtaatGTATTAAATCaattatgttttaaaattttaagaaaCAGGAACGCAAAGCTATGGTAAACATATTTACCATATTCTCCCTGTTAACACCCCCGAACAGAtttttgtttcattcttatcAAAGAATGTAGATTTGCAACTTATAGGTATGCATATTTGAAGGCTTGATTTCAAGGTAATGTTTTCCTCACAATACACTGGCTAAATAAAGGCTGCTCCTTAATATCACATCTAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640669.1 lncRNA upstream 152217 22025113 ~ 22036950 (+) False LOC120568180
XR_005640667.1 lncRNA upstream 153426 22025113 ~ 22035741 (+) True LOC120568180
XR_005640668.1 lncRNA upstream 153426 22025113 ~ 22035741 (+) False LOC120568180
TU157508 lncRNA upstream 168889 21935519 ~ 22020278 (+) True G116857
TU157416 lncRNA upstream 350415 21834466 ~ 21838752 (+) True G116794
TU157612 lncRNA downstream 34171 22234819 ~ 22236599 (+) True LOC120568856
XR_005640796.1 lncRNA downstream 35264 22235912 ~ 22238505 (+) False LOC120568856
XR_005640771.1 lncRNA downstream 107119 22307767 ~ 22314947 (+) True LOC120568744
TU157668 lncRNA downstream 264687 22465335 ~ 22472840 (+) True G116978
TU157787 lncRNA downstream 546472 22747120 ~ 22747732 (+) True G117077
XM_039815816.1 mRNA upstream 37554 22066016 ~ 22151613 (+) False LOC120568357
XM_039816586.1 mRNA downstream 904 22201552 ~ 22204193 (+) True exosc4
XM_039816573.1 mRNA downstream 3847 22204495 ~ 22210738 (+) True gpaa1
XM_039816575.1 mRNA downstream 20060 22220708 ~ 22226126 (+) True LOC120568851
XM_039816503.1 mRNA downstream 56560 22257208 ~ 22268559 (+) True LOC120568797
XM_039814973.1 mRNA downstream 287189 22487837 ~ 22495325 (+) True ripk1l
XR_005640709.1 other upstream 291776 21870953 ~ 21897391 (+) False LOC120568354
TU157037 other upstream 1273879 20882706 ~ 20915288 (+) False LOC120568904
XR_005640618.1 other upstream 1813534 20373235 ~ 20375633 (+) True LOC120567833
unassigned_transcript_559 other upstream 2672222 19516853 ~ 19516945 (+) True trnar-ucu_13
TU156400 other upstream 3170441 19017058 ~ 19018726 (+) False LOC120568770
TU157733 other downstream 407416 22608064 ~ 22612409 (+) False LOC120567968
XR_005640697.1 other downstream 440862 22641510 ~ 22678731 (+) False LOC120568311
TU158062 other downstream 1476431 23677079 ~ 23685804 (+) True LOC120567964
TU158130 other downstream 1650231 23850879 ~ 23855157 (+) True G117319
unassigned_transcript_561 other downstream 1667606 23868254 ~ 23868325 (+) True trnaw-cca_13

Expression Profile