RNA id: XM_039816588.1


Basic Information

Item Value
RNA id XM_039816588.1
length 2597
RNA type mRNA
GC content 0.60
exon number 4
gene id LOC120568858
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 27191141 ~ 27196206 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGCAGACTGACAGACACAATTGGCAGTGACAGCAGCGGTGGCTTTGCCGTCGATGCTCTCCCCTTGCTGCATGTGGCCTTTGAACTCATTGTTGTGTCGCGGATGACGTCAGTGCCGTGTGCTGGAGACGGAGCGGCGTGCGCCTGGCGAGACAAAGGCGGCGGACCGACCGGGGTCAGGCAGCAGCAGTAGATGCAGAGAGCTGAGaaccaatgtgtgtgtgttttttttaactgaaaactGCTAACCTTGGATTTGAGCGGCGGTCTCCCTGACGGTACGCAAAAGGAAGACCCAGTGACACTCCCAGGAATATGCTTTGACTctcaagaaagagaaaaaaaaacaacagagctCTCTTTTCgtttttaaaacgtttttctCCTACGCCCCCCCCATTTAGCGTGCTACTAGTTAGCTAACCAGTTAGCTCTCTAGCGTTGCACAGCGCACAGTACTCCTCCTCCTGGCTGCTTCTCATCTTTCCCTCAAAAATTGGGCGACAACCGAAGACAGGATCTCGTCGACAAAGGCAAGATAAAaagagGGTGAGCTCACTCCCAACAAACAGGCATCCGTGATCTGATGTGAGATCCACGGAGAGACAATGCCTAGCCCTTTATTCCACCCCGAGATTATGGACCACGACGTGGTGATCAGCAGCCAGCACAACGGGGTCGGTCTGCCCCGAGAGACAGACCAGGAGTCCCGGGAAGAGGACCATCATGATGCGCTCCGCTTCGCCCTGGACCAGCTGTCACTCATGGCTCTGGAGAAAGTGGACTGTGGTAGCGGAGGCGGCGGGCTGGTCGACACTCTAGATGGGACCCAGGGTCCGGGCTCCGAGGGCTGCAACGGTGTGGGCGGAGGGGGCTACGTGGATCTACAGATGCTGGAGCATCCAAACGGGTCCCGGGACTCGCCGACGTCCTGCTCTCCATCCCCGGAGTACTACGGCTCGGGCGGGTACCACATGGCCAGCACGCACTCCATGCTCCACGGGGAACAAAGCTCCGTCCTCTGCAGCAGGAAAAGAAGTGTCAACATGACGGAATGTGTACCTGTCCCCAGCTCTGAACATGTGGCTGAAATAGTGGGGAGACAAGGTTGTAAGATTAAGGCCTTGCGTGCCAAAACAAACACCTATATAAAGACTCCAGTCAGAGGCGAGGAGCCAGTGTTTATCGTGACGGGACGCAGGGAGGATGTCGAGATGGCCAAGCGGGAAATTGTCTCTGCGGCTGAGCATTTTTCTATGATTCGGGCGTCCCGCTGCAAAGCTGGAGGGCCCGGTGGAGGAGGCGGCGGTGCCAGCTCTCTTCCTGGACCACCACACTTACCTGGACAGACCACCATACAGGTGAGGGTGCCCTACAGAGTAGTCGGTTTAGTTGTCGGACCAAAGGGAGCAACGATCAAGCGCATCCAGCAGCAGACTCACACCTACATCGTGACACCCAGTCGAGAGAAAGACCCGGTGTTCGAGGTGACCGGCATGCCGGAGAACGTGGACCGCGCGCGCGAGGAGATCGAGACCCACATCACCCTGCGAACTGGAACCTTTGTAGACCTGCAGGGAGACAATGACTTCCACTCCAACGGCACGGATGTCAGTCTAGAAGGCCTGGGCGCCCTGAGCGGAGGGCTGGGGTCGTCCCTGTGGTCCAGGGCTACTGGCCACCATTCggtccccccccctcctcctccgcccTCCCCAccgcctcctcccctccccATGTCCATGCACCACTCCTCCAGCCGGAAGATGTCCTCCTCAGTAGCCTATCACACGCACAACGGCGGGATGAGCTCCGACAACTTCAGCACCTCTCGCAAGGCCAACGAGGGAGGCAGCCCCACCAGCCCTTTTAGCACAGGCTCCAGCAGTGCTGGAGGAGGGTTTACTTTCGGGGGCGACTCCACCCCAGGGCTGCCCTCCTCGGACGAGCTGGGCTTTGAGTTCACCGCTGCCAACATCTGGGCACCTTTCGTCAACGGCGGGGCGGGCAATAAGACGGCCGGCtcctcccagcagcagcagcctctaCGTCGCAACAGCAGCGGCCTCAGCGGTGGCGCCATCACTCCAAGATTGTCTCCAACTCTGCCTCAGGACACGGGCGTGGGCCCCCTGGATCATCCACTAGCCCGTCGTGCACAGAGCGACCCCCTCAGCACTCTCTCCTGGCTACAGTCGGGCAGCGCAGGAGGCGGCTCCTTCTCCGGCGCGTCCAGCTCCAGCTCCGGCGGTTCGTCGACCGGTTACTCCTCCTGCTCGGCGTCCTCCCTGCCTGGCGGCTCGCCCACTGACTCCGAGggaggcggcggcggcggcggcatGGTCCTCAGCTCCGGGATGCTGAGTCGGCTGAAAGGCGGCTCCGTCTCCGGGGTCGCGGGCCTGGTCGGCGTCAGCCCCGGGATCAACAGGGACTGCTTTGTGTGTTTCGAGAGCGAGGTGACGGCAGCCCTGGTGCCTTGTGGCCACAACCTGTTCTGCATGGAGTGCGCCGGGCAAATCTGCCAGTCAGCTGAGCCCGAGTGTCCCGTCTGCCACACCCCCGCCACACAGTGCATCCGCATCTTTTCCTAATGC

Function

GO: NA

KEGG:

id description
K15686 MEX3, RKHD; RNA-binding protein MEX3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159427 lncRNA upstream 8569 27179118 ~ 27182572 (+) False LOC120569025
TU159446 lncRNA upstream 13935 27162962 ~ 27177206 (+) False tcf3a
TU159413 lncRNA upstream 135450 26976298 ~ 27055691 (+) True G118265
XR_005640817.1 lncRNA upstream 170032 27019846 ~ 27021109 (+) True LOC120568996
TU159409 lncRNA upstream 222151 26968504 ~ 26968990 (+) True G118263
TU159432 lncRNA downstream 1977 27198183 ~ 27198459 (+) True G118283
TU159460 lncRNA downstream 48543 27244749 ~ 27244955 (+) True G118303
TU159428 lncRNA downstream 56337 27252543 ~ 27255349 (+) False G118280
TU159429 lncRNA downstream 56337 27252543 ~ 27254913 (+) True G118280
TU159464 lncRNA downstream 62168 27258374 ~ 27261355 (+) True G118306
XM_039816675.1 mRNA upstream 911 27183776 ~ 27190230 (+) True mbd3a
XM_039816677.1 mRNA upstream 911 27183777 ~ 27190230 (+) False mbd3a
XM_039816831.1 mRNA upstream 8421 27179097 ~ 27182720 (+) False LOC120569025
XM_039816830.1 mRNA upstream 8421 27179099 ~ 27182720 (+) True LOC120569025
XM_039815526.1 mRNA upstream 13942 27147064 ~ 27177199 (+) False tcf3a
XM_039814772.1 mRNA downstream 50087 27246293 ~ 27251271 (+) True LOC120567763
XM_039814863.1 mRNA downstream 65454 27261660 ~ 27281330 (+) True LOC120567815
XM_039814861.1 mRNA downstream 76006 27272212 ~ 27281330 (+) False LOC120567815
XM_039814864.1 mRNA downstream 76006 27272212 ~ 27281330 (+) False LOC120567815
XM_039814865.1 mRNA downstream 76006 27272212 ~ 27281330 (+) False LOC120567815
TU159378 other upstream 305111 26883559 ~ 26886030 (+) True G118234
TU159241 other upstream 421230 26765492 ~ 26769911 (+) True G118149
TU159178 other upstream 591069 26590830 ~ 26600072 (+) True prkab2
TU159113 other upstream 773133 26416508 ~ 26418008 (+) True ccl20a.3
TU159071 other upstream 789063 26399420 ~ 26402078 (+) False G118011
TU159680 other downstream 405818 27602024 ~ 27609718 (+) False LOC120568838
TU159791 other downstream 960767 28156973 ~ 28159589 (+) False LOC120568082
TU160295 other downstream 2772207 29968413 ~ 29969850 (+) False LOC120567689
TU160411 other downstream 3373189 30569395 ~ 30574881 (+) False LOC120568595
TU160502 other downstream 3975011 31171217 ~ 31196233 (+) True G119114

Expression Profile