RNA id: XM_039816589.1


Basic Information

Item Value
RNA id XM_039816589.1
length 3858
RNA type mRNA
GC content 0.45
exon number 11
gene id nmnat2
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 2665824 ~ 2689216 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tctctctctctctctctctctccttctgcgGACCTACAGACCTGAACACAAACAGAGACCGGGACCGGACCGGACCGGGACATAACACAACTCACAAGACAgacaacagaagaagaagaaaaaagaaacgaGAGGAACCATGACAGAAAACACCAAAACGCACGTCATCCTGCTGTCCTGCGGCAGCTTCAACCCCATCACCAAGGGACACATCCATATGTTCGAAAAAGCCCGAGAATATCTGCACAAAACGGGTCGCTTCATCGTGATCGGAGGAATCATCTCGCCGGTGCACGACTCCTACGGGAAACCTggtttaGTCCCCAGCAGACATCGTCTCACCATGTGTCAGCTGGCCGTCCAGTCCTCTGATTGGATCAGGGTGGACCCCTGGGAGTGTTACCAGGACACCTGGCAGACGACCTGCAGCGTGCTGGAGCATCACCGCGACCTGATGAAGAGAGTCACCGGCTGCATTCTGTCCAACGTCAACACGCCGTCAACGActcctgtgattggtcagcCACAGAATGAGACTCCGCCCATCTACCAGAACCACAACAACATGAATCATAAGCCCACAGCCATCAAACTGTGGGGGAAGATCAGCGAGAATTTGGGGAAGATCTGCTGCGTCCGCCCTCACATCGAACGCTTCACCTTCGTCGATGAAAACGCAAACCTGGGCACCGCCATGAGATACGAGGAGATCGAGTTACGCATCTTGCTCCTGTGTGGCAGTGATCTCCTGGAGTCCTTCTGCATCCCTGGCCTGTGGAAGGACAGTGATATGGAGGTGATCGTGGGAGATTTTGGGATCGTGGTTGTTCCTCGTGATGGAGCCGACACAGAGAAGATCATGAATCACTCTTCCATTCTCCGCAAGTTCAAGGACAACATCACTGTGGTGAAAGACGGGATGAGCCACCCGATGTCCATCGTCAGCTCAACTAAGAGCAGACTGGCCCTGCAGCACGGTGACGGCCATGTTGTGGACTACCTGAGTCAGCCCGTCATTGACTACATTCTACAGAGTCAGCTCTACATCAACGCCTCTGGATAGACACAACAACCTGCCTGCAAAGAAACCCCAAAACGTCCTTCTTTGTCTTCTGTGTCAAACATATACTCTTCTTTGAGCTTTTCCAAAACCGGAGCATTAGTGTCCCTACTTCTGTCTGTGTCATGACGTTACCATCAGGGAGGGGGCCAGGGTGGGTTGCGGCAATTTTGGGATGAGATTGGGGTGTTGGTGAGTAGGTATGGAGGTCATCTTTAAGGGCTGCAGGGGTGTCATCGATGTATTTTCACTGCAGTGGTAACAgcagtgttttctctgtttgttaTGTCTTTATTAAAAGTTTGGGGTTGCATGACACACAACCAGGCATGCTCAGTGTACCAGGggctgatttgaaaaaaaataaaaattctgtATCAGGGTAGCATTTAGCTAAAAGGCGACAGGGTTATTGGGCCTCACGCAAGAACCAATCGCACTGACAGATTTGTAAGTAAAAGTTTGAAATTCCCAAACTGCTCCCAATTTATAGTCTTCTCTTTTATATGTATGACATATAAACAAGTGGTGTTTTCTTTCCCAAAACAACTTGTCCATGTCATAGTTATAAGGGCATCCGGACttgtttaaaggtgctctgAGGGTTTTTTGTCTCTCATTCCAGAGACTTCTTCAGCGAACGGTTGGGAAACCCAGCTATTTAACCTCTTTGTGGTCGTTGTCAAGATGATCGAAATCCTTTTTGTTCATTCAGTCGGAACTGAATAAGTTTCTCGTTTGAGAGACAAAAAGTCTTCAGAGCACCTTTAATCAAGTCGCCCTTGACTTTTATCGGCAGGGTTATTGGGCCTCATGCAAGATCCGCTCGTACAAACAAATTCGTaagaaaaagtcattttttcCCCAATACTTTATAGTGTTCTCTTTTATGtatgaaataaatacagtaaGTGGTCCTTTCTCTCCCAAAACAACTTGTCCAGGTCATAGTTGTCCAAAGAAGGGTTAAAATCAAATGCTACTCGACTTGGTTAAAGTTGCTCCGAAGATGTTTCGTGCCCCGTAAAGTTttcaatttagttttatttaaagtgtcaaatcatagagaagttatctcaggacacttcacAGTCTTTGTAAGTCCAGTATTTTTGTGGGGCGACCTCATAGTCTGAAGCACTGATACTGAAGTTGTTTTATACCTTTTTAGAAAAGGTATTGACAGCTAACGTAGCCACCTAGTTTcaagattttaaattcaatttatttcatttataaagcactttgcactttgcacttgcttcacaaagacaaaaacatatgtatacaaccataaaacacacaaatatacatatatacatgtggTGGAAAGATAATAAAATTTTAATAGAAACAAGTTGAAACCCAAAGAGTAAAAGTGCATCTAAAAGTGTTGAAACATAAACACGGTCGGATGCGTCTTTCGACTGTACGTTCTCTCTGAACACAACATAAGATTTGTTCACAATCAAATGGAAACGTTCTTGCTTGAGGCCCGTTTTCATTTTGTCAGATGTTTTGAAGGAAGTTTAACTTGAGGATCTCAAGTTTGACAACAAGTACACTCAGCTACCGTCATTGTCTGTCCTGCTGTAGCTGTATCTAAAACTGTACATAGTGACACACCGATCGTAGTTCAGGGCAACAGTTTAACCTCCGAGCTAAAGGTATAATAACCTGCAGGTAAACATAGCAACAGTACCGATGCTTAAGGCTCTGTTTGTGGTTTACATAACCTAACCGTTAAACTAACTCcaaaccaacacattctcactcccagtgCGTCAAAAAAGGGACggttggtcaggtgcctttggcgtttgtttcTGACACAAAAAGTCTCTTTGACTCAATCAGATGCAGCAGGGCTTTCAACTAATTCACACTTGGTTAGggagccatttaaaaaaattatgtttaagTGGCATGCTGCACAACAACGgaacagttaggtttaggaaaagctCTTGGGTGGAGTTTCTAAAAGTATGTTTAAGTGagaggtttaggaaaagatcgtgggagggttagggttaaggctTGATTATACTCAAACGTTACGAGCATGCACGGAGATGTTTATGCTCAACGCTTTGTTTGtgaccccggataagcggacgaagatggatggcaTTGTTTGTAGCAGTATTCTCTGAAACACCAGGGGGCGTACGAACAAAATAATCTGTGAATAGGCAAGAAGtagtagagaagaagagagcAGAAGTAAAGGCAAGTAGGGCGCGTGGCAACAGTAGTAAACACATCCATTATAAACACCGGTGTAACgctaaaaattacatttatctaCTCTAATCATTAACGTGACTGTCATTTATCTCCAAATCTAAATGGCTGTCTGCCTGTAACTGTTAAGAACACTCTCTTCTTTTCCCAGTGTAGTGTTTGACCCTGTGGTCTGTACGTGAAGAATCCTACAGATGTTTGTAGAGGCGAACCTGCTCTTCCCAGCCGACTGTGTTGAACTGAAAGAGCAGCGCTCGTTGAGTTAGAAATTCAGAGGTGCACGACAACGCGCCACGACAACTTGGGGAGCCTTCACGCTGGAAACAACAGCCGTGGTGACGTAATTTTATGGCTCATGCACCGCGTGCCGGGAACACGCAGCTACCATAAACCTCGCTTCAGGGTGTTGTTTGCCTCCTTACGCTGATTTTctgtctttcatactactctctaccggggtctctcttaatactacgtcatcttacaagtagggttgggcatcgtttggatttgaacaattctgattccaattccgattcttcctttggatt

Function

GO:

id name namespace
GO:0009435 NAD biosynthetic process biological_process
GO:0016779 nucleotidyltransferase activity molecular_function

KEGG:

id description
K06210 NMNAT; nicotinamide mononucleotide adenylyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150060 lncRNA upstream 10391 2654873 ~ 2655433 (+) True G111428
TU150022 lncRNA upstream 29781 2571176 ~ 2636043 (+) False G111404
TU150029 lncRNA upstream 29781 2579853 ~ 2636043 (+) False G111404
TU150028 lncRNA upstream 40495 2565135 ~ 2625329 (+) False G111404
TU149990 lncRNA upstream 43323 2433139 ~ 2622501 (+) True G111382
TU150113 lncRNA downstream 48400 2737616 ~ 2742300 (+) True G111455
TU150115 lncRNA downstream 53208 2742424 ~ 2750937 (+) False LOC120568825
TU150119 lncRNA downstream 79588 2768804 ~ 2772238 (+) True G111461
TU150106 lncRNA downstream 98567 2787783 ~ 2789124 (+) False rasal2
TU150124 lncRNA downstream 104368 2793584 ~ 2793985 (+) True G111464
XM_039816090.1 mRNA upstream 200984 2463673 ~ 2464840 (+) True LOC120568517
XM_039816088.1 mRNA upstream 428264 2234821 ~ 2237560 (+) True LOC120568514
XM_039816087.1 mRNA upstream 507259 2154935 ~ 2158565 (+) True LOC120568513
XM_039816079.1 mRNA upstream 656944 2006800 ~ 2008880 (+) False LOC120568507
XM_039814970.1 mRNA upstream 730047 1924151 ~ 1935777 (+) True LOC120567896
XM_039816549.1 mRNA downstream 43390 2732606 ~ 2733898 (+) True LOC120568826
XM_039816548.1 mRNA downstream 60638 2749854 ~ 2751572 (+) True LOC120568825
XM_039816303.1 mRNA downstream 98563 2787779 ~ 2826854 (+) True rasal2
XM_039815924.1 mRNA downstream 609648 3298864 ~ 3304226 (+) True ptmab
XM_039814780.1 mRNA downstream 698838 3388054 ~ 3398106 (+) True LOC120567769
TU150017 other upstream 29781 2572188 ~ 2636043 (+) True G111404
TU150031 other upstream 29781 2615577 ~ 2636043 (+) False G111404
TU149996 other upstream 87893 2577121 ~ 2577931 (+) True G111388
unassigned_transcript_508 other upstream 225481 2439709 ~ 2440343 (+) True LOC120568516
TU149991 other upstream 225626 2439736 ~ 2440198 (+) False LOC120568516
TU150110 other downstream 127728 2816944 ~ 2824588 (+) True G111452
TU150157 other downstream 248933 2938149 ~ 2940848 (+) True G111486
TU150165 other downstream 327742 3016958 ~ 3075901 (+) True G111494
TU150153 other downstream 331377 3020593 ~ 3021258 (+) True G111484
TU150236 other downstream 698878 3388094 ~ 3399183 (+) False LOC120567769

Expression Profile