RNA id: XM_039816592.1


Basic Information

Item Value
RNA id XM_039816592.1
length 4388
RNA type mRNA
GC content 0.58
exon number 27
gene id mast3a
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 34530555 ~ 34565654 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGTCTGACCAAAACTACTATTGGACCGTGTTGCCGAGCTACAAAACTAGTTTTGTGACTGGGGCCATGATGAAAAGATCAAAAAGTTCCCGTAACAACAAGAGAAGGAGTTTGGCAGTCGGGACCCCGTCGCCCACGCTCTCGCGACCTCTTTCGCCCCTCCCGCTTGCCACAGCTGGCAGCAGCCCTTCAGAAAGCCCCAGAAATGTCTCTGCAAGCACTTCTGCCAACTTCCAGTTTGCACGCAGCCAACTGGCCCGCACTGAAAGAGCGGACGGGCGAAGGTGGTCTGTGGCGTCCGTTCCCTCGTCTGGATACTGCACCAGTGCACCCAGTTCATCGGTATCTTCCTCTTCTTCCCAGGAGTTATTGCACCAGTTGCCCTTCCAGCCCACGCAAGATGATCTCCACTTCCTGTTCAAACATTTCCGGAGCACAGAGAGCGTGGCGGACGAAGAAGGAGCACACGCCTCTCCCCCTGTCAGGCTCCGCTCACGCAGTCTCAGCCCTGGACGGACCTGTGGAACATTTGACAATGAAATTGTCATGATGAATCATGTCTACAAAGAACGCTTTCCTAAGGCGACAGCCCAAATGGAGGGTCGGCTGCTGGACGTCATCGCCGAGTGTTCCCCAGACACTGCTTTGCCCCTGGCTGATGGCGTGCTGGGCTTCATCCAGCACCAGCTGGTGGAGCTCGCCAGAGACTGTCTGGACAAGTCCCAGAAAGGCCTGGTCACCTCCAGGTACTTTGTGGAGCTGCAGGAGAAACTGGAGAAGCTGCTGCACGAGGCGTACGAGCGTTCGGAGAGCGAGGACGTAACCATCATTACCAAACTGGTCAAGAAGATTCTCATCATCATCTCCCGGCCTGCCAGGCTCCTGGAGTGTCTGGAGTTTGATCCGGAGGAGTTTTACCAACGTTTGGAGGTTGCCGAGGGCCAAGCCAAGGTGGGCCAGGGCATCAAGACCGATATTCCCAGATACATCATCAGCCAGCTCGGCCTCACCAGGGATCCCTTGGAAGAGATGGTCCACCTGGAGCAGACGAGTCCGAGTCACAGAGCCGCCAGCAGAGAGTCTGATGAGACGGGAGAGGCCACACCTGTACAGaGCCGAGCAGCCTGCACCCCTCCTCGCAGGAAACCACTGGAGAGCGACTTTGAGACTATCAAGCTCATTAGTAATGGCGCCTATGGGACTGTATTCCTGGTGCGCCACAAGGAGACCCGTCAACGTTTTGCCATGAAGAAGATCAACCGGCAGAACCTGATGCTTAGGAACCAAATCCAGCAGGTGTTTGTGGAGCGAGACATCCTCACCTTTGCCGAAAACCCATTTGTGGTTTCGATGTTCTGCTCTTTTGAGACGCGCAGGCACCTCTGCATGGTCATGGAGTATGTGGAAGGTGGGGATTGTGCCAACCTACTGAAGAACATTGGCCCCCTGCCTGTGGACATGGCTCGGATGTATTTTGCAGAGACTGTCCTGGCTTTGGAGTACCTTCATAACTATGGCATTGTACACAGAGACCTCAAACCTGACAATTTGTTAATAACCTCCATGGGACACATTAAGCTGACAGACTTTGGGCTGTCAAAGATCGGTCTGATGAACATGACCACCAACTTGTATGAAGGACATATTGAAAAGGATACCAGAGAGTTCATCGACAAACAGGTGTGTGGTACTCCCGAGTACATTGCTCCAGAGGTTATCCTGAGGCAGGGCTATGGGAAGCCAGTAGACTGGTGGGCTATGGGAATCATCCTCTATGAGTTCTTAGTGGGCTGTGTGCCTTTCTTTGGAGACACACCAGAACAGCTCTTTGGTCAGGTGGTCAACGATGACATCATCTGGCCAGAAGGGGAGGACGCACTGCCAGCTGATGCCCAGGACCTTATCACCAGGCTGCTGAGACAGAGCCCTCTGGAGCGCCTGGGAACAGGTGGAACCACGGAGGTGAAAATGCACATGTTCTTCCTGGGTCTGGACTGGAACGGCCTCCTGAGACAGAAAGCTGAATTCATACCTCAACTAGAGACTGAGGATGACACCAGTTACTTTGACACCCGATCTGAACGCTACTGTCACCTGGACTCAGATGACGATGATGAAACCAACGATGATGAATCCTCTCTGGAGCTCCGACAGTTCTCCTCTGTGGCCCACCGCTTCAGCAAGGtgtacagcagcacagagcaccTGTCCACCTCCACGCCGTCCAACCAGAGCCTGTCGTCGTCGGAGCGGAGCCACAGCGAGGAGAAGGAGGAGCGATGGGAGGGCAGGGGAGTCCTCTCCCCTGGCGATGGACACAAACACTTGGCTAGTGCTGACAGGAGGGCAGATGGACACAGGGGGAGTCTGCGTCCCCGCGCTTCGTCCAGCTCGTCCCAGTCAGAGCGCAGCACCAGCCCACTGGTGATGAACAGCACCCAGAGCCTGGACTTCATGCCTCGCTTCGCCATCTCTGCCGAGGAGGAAGACGGAATGGTGTCCAACCTGCGCCGCATTCGGCTCCGGAGCAACAGCACAGGCACCCGGCCGTCCTTCCGAAGAGGGGCGTCCCGGCGCATAGCCCACCAGCTGGAGACCCCGGAGAAACCCAGATCCCCAGCTGGAAAGGTCCCCAAGTCTGCCTCTGTCTCTGGCCTGTCCCTCATCATCACCCCAGACGACTCAGCGGGTCCTCCTACGAGCCCCAAATCCTCCTTGTCCCTGTCGTCCAACCCCTCGTCCAGAGACTCGTCCCCCAGCAGGGACCTCTCTGTCAGCGTCAGCTGCCTCAGGCCTCCCGTGGTCATCCACAGCTCCGGGAAGAGGTTTGGCTTTGCGTTGCGAGCAATCCGAGTCTACATGGGAGACACCGACGTCTACACTGTTCACCACATGGTCTGGTGTGTTGAGGAAGGCAGTCCAGCCCACGAGGCAGGATTAAGGGCTGGTGACCTCATCACTCACGTCAACGGGGAGTCGGTCCAGGGACTCGTCCACACTGAGGTGGTGGAGCTCCTGCTCAAGAGTGGTAACCGGGTGACCCTGCAGACTACTGCACTGGAGAACACTTCCATCAAGGTGGGCCCTGCCAGAAAAGCGAGCTACAAGGCCAAGATGGCCCGGCGCAGCAAGAAGAGCAAGAGGAAGGACGGACAAGACAGCCGCCGTCGTAGCATCCTGAAGAAGCTGTCTAAGCACACGCCTCCTCCGCCCATGCAGAGCAGTCGTAGCTTCTCTTCGGGTTTCCACCAGTCATCCAGCGACAGCCTCTCCGGCTCCCCCACGCAGAGTCTCTCTCCTGGGCCGTCTACGCCTTGTCGCTCTCCTGCTCCTGATCACTCCGGAGATTCAAGTTCTTCTCCTTGCTCCAGCTCCCCTAACTCGCCTGTACCACAGGCCCGTCCCAGTTCCCTACACGTCTTGGGCCGCTACACCAAAGCTGGCCGCTGCAAGTCCACGAGCAGTATTCCTCCTTCGCCGCTGGCCTGCATCCCACCTCCTCAGCCCCTCTCTCCCCAGTGCTCTCCGTCCTGCCTCCCGTGTCACCCCAAGTCCCTACAGGGTTTCCACGGCAAGACGTTGTCCCCTCCCACCATCACCCGCCATTCGGTGCGTCCCCGCAGCGCGGAACCGCCACGCTCGCCGCTCCTCAAGAGGGTCCAGTCAGCAGAGAAGCTGACAGGAGACAAGATGACGGGGGGCTACCACGGCGACAGGAAGGCCTACAGCACCCGCCGCCACACCATGGAGGTGCCGCTGTCAgaaggggaggggctggaggacTTGGAGGGGGACACCGCAACCGGGTTCGTCTGCGTGGGTGAGCACGGCCGTCAGGGTCTGTACATAGGAGGGCAGAGGGGCCACCAGGACGCAGCCGGCGGGGGCAGCGAGCACTACCGCGCCACCGCCTCGCCGCAACACCGCGGCAGCAGCCACCACTCCAGCGAGGTGGTGGTGATGAGGAAGCTGGCGCTGTCGGACCGGAGGGACTCCTTCAAGAAACAGGAGGCCGTGCAGGAAGTGAGTTTCGACGAtttggaggagagagaggcgaCGCCGAGCCCGACGCCTCCCGTCACGCAGCCCAAGGCGTTCAAGGCATCCTGGATCAACTCGGCCCAGTCAGAATCGGCCGTGAAGCCGGAAGGAAGAGGATCACAGGGTACGACAACGCCGCCGAAAGCCAAgtcaaaagacaaagagaggtTTTAGTTCAGTCACTTTGCCAGGGATGACCGGTCAATAAAGAGACGAGAGGAAATGAAGTGAAGCGTTTGACCTGCTACTGTACCTACATTTGAAGGCCTTGCATGCGTGTCCGGAAAACTGTGACCAAGTCCCAAATCACCGTAGGGAACTGCTTGAAGACTGAAGAACAAGTTAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161949 lncRNA upstream 44082 34472849 ~ 34492377 (+) True LOC120567793
TU161998 lncRNA downstream 2531 34568185 ~ 34568765 (+) True G120291
TU161997 lncRNA downstream 38206 34603860 ~ 34607756 (+) False pik3r2
TU162002 lncRNA downstream 52120 34617774 ~ 34618212 (+) True G120295
TU162009 lncRNA downstream 80038 34645692 ~ 34665214 (+) False pde4ca
XR_005640791.1 lncRNA downstream 202447 34768101 ~ 34771677 (+) True LOC120568809
XM_039815192.1 mRNA upstream 103955 34425299 ~ 34432504 (+) True angptl4
XM_039816045.1 mRNA upstream 132458 34400748 ~ 34404001 (+) True rps28
XM_039816872.1 mRNA upstream 283316 34243838 ~ 34253143 (+) True nr2f6a
XM_039816873.1 mRNA upstream 283316 34243838 ~ 34253143 (+) False nr2f6a
XM_039816715.1 mRNA upstream 366540 34166976 ~ 34169919 (+) False LOC120568953
XM_039815519.1 mRNA downstream 3740 34569394 ~ 34607756 (+) True pik3r2
XM_039815521.1 mRNA downstream 3740 34569394 ~ 34607756 (+) False pik3r2
XM_039815520.1 mRNA downstream 9599 34575253 ~ 34607756 (+) False pik3r2
XM_039815063.1 mRNA downstream 52898 34618552 ~ 34622369 (+) True ifi30
XM_039815066.1 mRNA downstream 58622 34624276 ~ 34691620 (+) False pde4ca
TU161934 other upstream 78848 34453722 ~ 34457611 (+) True G120249
TU161901 other upstream 132458 34400801 ~ 34404001 (+) False rps28
TU161873 other upstream 218693 34317148 ~ 34317766 (+) True G120200
TU161769 other upstream 370613 34164103 ~ 34165846 (+) False mrpl34
TU161681 other upstream 578955 33955183 ~ 33957504 (+) True LOC120568585
unassigned_transcript_567 other downstream 206420 34772074 ~ 34772146 (+) True trnar-ccu_3
unassigned_transcript_568 other downstream 206496 34772150 ~ 34772221 (+) True trnam-cau_25
unassigned_transcript_569 other downstream 210424 34776078 ~ 34776149 (+) True trnam-cau_26
XR_005640811.1 other downstream 1037734 35603388 ~ 35609359 (+) False LOC120568940
unassigned_transcript_570 other downstream 1662170 36227824 ~ 36227906 (+) True trnal-uaa_3

Expression Profile