Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00008399 |
| length | 919 |
| lncRNA type | inter_gene |
| GC content | 0.40 |
| exon number | 3 |
| gene id | XLOC_003417 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 21612671 ~ 21759025 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0071932 | replication fork reversal | biological_process |
| GO:0000724 | double-strand break repair via homologous recombination | biological_process |
| GO:0000725 | recombinational repair | biological_process |
| GO:0061980 | regulatory RNA binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00008591 | lncRNA | upstream | 204097 | 21406687 ~ 21408834 (+) | True | XLOC_003415 |
| TCONS_00008590 | lncRNA | upstream | 306169 | 21302712 ~ 21306762 (+) | True | XLOC_003414 |
| TCONS_00006682 | lncRNA | upstream | 426247 | 21185469 ~ 21186684 (+) | True | XLOC_003413 |
| TCONS_00008588 | lncRNA | upstream | 682607 | 20928241 ~ 20930324 (+) | False | XLOC_003407 |
| TCONS_00008600 | lncRNA | downstream | 161433 | 21902677 ~ 21903694 (+) | True | XLOC_003419 |
| TCONS_00006696 | lncRNA | downstream | 855482 | 22596726 ~ 22599593 (+) | True | XLOC_003423 |
| TCONS_00008601 | lncRNA | downstream | 1179225 | 22920469 ~ 22927188 (+) | True | XLOC_003426 |
| TCONS_00008603 | lncRNA | downstream | 1853105 | 23594349 ~ 23597671 (+) | False | XLOC_003430 |
| TCONS_00008602 | lncRNA | downstream | 1853105 | 23594349 ~ 23597671 (+) | True | XLOC_003430 |
| TCONS_00006683 | mRNA | upstream | 14404 | 21586335 ~ 21598527 (+) | False | XLOC_003416 |
| TCONS_00006684 | mRNA | upstream | 14523 | 21587950 ~ 21598408 (+) | True | XLOC_003416 |
| TCONS_00006681 | mRNA | upstream | 473428 | 21137948 ~ 21139503 (+) | True | XLOC_003412 |
| TCONS_00006680 | mRNA | upstream | 513148 | 21096339 ~ 21099783 (+) | True | XLOC_003411 |
| TCONS_00006679 | mRNA | upstream | 526677 | 21076872 ~ 21086254 (+) | True | XLOC_003410 |
| TCONS_00006687 | mRNA | downstream | 169099 | 21910343 ~ 21962834 (+) | False | XLOC_003420 |
| TCONS_00006688 | mRNA | downstream | 169508 | 21910752 ~ 22094392 (+) | True | XLOC_003420 |
| TCONS_00006689 | mRNA | downstream | 368643 | 22109887 ~ 22165841 (+) | False | XLOC_003421 |
| TCONS_00006690 | mRNA | downstream | 393296 | 22134540 ~ 22169026 (+) | True | XLOC_003421 |
| TCONS_00006692 | mRNA | downstream | 633175 | 22374419 ~ 22582127 (+) | False | XLOC_003422 |
| TCONS_00006677 | other | upstream | 560587 | 21052228 ~ 21052344 (+) | True | XLOC_003409 |
| TCONS_00006668 | other | upstream | 1579746 | 20033066 ~ 20033185 (+) | True | XLOC_003402 |
| TCONS_00006652 | other | upstream | 2522119 | 19060099 ~ 19090812 (+) | False | XLOC_003396 |
| TCONS_00006645 | other | upstream | 2936374 | 18676442 ~ 18676557 (+) | True | XLOC_003392 |
| TCONS_00006630 | other | upstream | 3628157 | 17964689 ~ 17984774 (+) | False | XLOC_003382 |
| TCONS_00006698 | other | downstream | 972771 | 22714015 ~ 22714131 (+) | True | XLOC_003425 |
| TCONS_00006700 | other | downstream | 1656026 | 23397270 ~ 23397385 (+) | True | XLOC_003428 |
| TCONS_00006723 | other | downstream | 2437579 | 24178823 ~ 24178938 (+) | True | XLOC_003444 |
| TCONS_00006731 | other | downstream | 2598118 | 24339362 ~ 24345423 (+) | False | XLOC_003446 |
| TCONS_00006732 | other | downstream | 2598130 | 24339374 ~ 24345421 (+) | False | XLOC_003446 |
