RNA id: XM_039816601.1


Basic Information

Item Value
RNA id XM_039816601.1
length 1358
RNA type mRNA
GC content 0.45
exon number 9
gene id LOC120568865
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 18060695 ~ 18070437 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAAATCACATAGAGCTCCACCGACTCTCAGTTTGCATCCTCCTCTCTGCTCACTCGCTCTGagctccctctgtctctcctcctttctGCATCTGCTGGTTACTCTCCCCGTCAACCTTGTGAGGGTGTCTTCCCCTGATCATCTGCAACAGTTTTTCAACTAAAGAAATACaaactttttttctccaaagcTTGCGAGACACTGAGACCCAACTGTCACCATGGAGGCCATCAAGAAGAAGATGCAGATGCTGAAGTTGGACAAGGAGAACGCCATCGACAGGGCAGAACAGGCCGAGTCCGACAAGAAGGCAGCCGAGGATAAATGCAAACTGCTGGAGGATGAGCTGCTCGCTCTGCAGAAGAAACTGAAGGGAACAGAGGATGAGCTTGACAAGTACTCGGAGGCCCTGAAGGATGCTCAGGAGAAACTGGAACTGTCGGAGAAGAAGGCCGCAGATgcgGAGGGCGATGTGGCATCTTTGAACCGCAGGATCCAGCTGGTGGAGGAGGAGTTGGACCGTGCTCAGGAGAGACTGGCTACAGCCCTTCAGAAACTGGAGGAGGCTGAGAAGGCTGCAGATGAGAGTGAAAGAGGCATGAAGGTGATTGAGAACAGAGCCATGAAAGACGAGGAGAAGATGGAGATCCAGGAAATGCAACTCAAAGAAGCCAAACACATCGCTGAGGAGGCAGACCGCAAATACGAGGAGGTTGCCCGCAAACTGGTAATCCTTGAGGGTGAGCtggagagagcagaagagagggCAGAAATTGCAGAACTTAAGTGTGCTGACCTGGAAGAAGAGCTGAAGAACGTCACCAACAACCTCAAGTCGCTAGAGGCTCAGTCTGATAAGTACTCTGAGAAAGAAGACAAGTATGAGGAAGAGATTAAAGTCCTGAATGACAGACTTAAGGAGGCGGAGACCCGTGCAGAATTCGCAGAGAGGTCCGTGGCTAAGCTGGAAAAGACCATCGATGACTTAGAAGAGAACCTATCGAAAGAAAAAGAGCAAAACGTAGGAATGCACCAAGTCCTGGACCAAACACTGCAGGAGCTCAATAGCTTGTAAAATTCCATGAagatcaaacaaataaaaaaaaaacaaattttttttgttttgtgaaagATTTTCTACATGCCATCCATTCTCTGTAATTTCACTATTATTCCTAAACACGTACcccttttatatatttatggttctttttgtttcttttcccttttattttttttttaattttatttttttttttaatggttttggGACCATATGATAATCAGTTTTGGTGCTAGAAATTGTGTTGTAGACCAAACTCTGAGCACAAATTAAACTGAACATGATGATAAAGTGA

Function

GO: NA

KEGG:

id description
K10373 TPM1; tropomyosin 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155949 lncRNA downstream 2589 18052984 ~ 18058106 (-) True LOC120568693
TU155934 lncRNA downstream 93003 17965813 ~ 17967692 (-) True G115624
TU155864 lncRNA downstream 452438 17607456 ~ 17608257 (-) True G115577
TU155850 lncRNA downstream 486570 17573463 ~ 17574125 (-) True G115570
TU155848 lncRNA downstream 487566 17572897 ~ 17573129 (-) True G115568
TU155961 lncRNA upstream 4635 18075068 ~ 18076412 (-) True G115640
TU155962 lncRNA upstream 6107 18076540 ~ 18077059 (-) True G115641
TU155965 lncRNA upstream 10765 18081198 ~ 18083844 (-) True G115644
TU156018 lncRNA upstream 162435 18232868 ~ 18234515 (-) True G115691
TU156041 lncRNA upstream 189491 18259924 ~ 18260284 (-) True G115710
XM_039816361.1 mRNA downstream 2536 18054558 ~ 18058159 (-) False LOC120568693
XM_039815773.1 mRNA downstream 40799 17999900 ~ 18019896 (-) False ranbp3b
XM_039815768.1 mRNA downstream 40799 17999900 ~ 18019896 (-) False ranbp3b
XM_039815771.1 mRNA downstream 41180 17999900 ~ 18019515 (-) False ranbp3b
XM_039815766.1 mRNA downstream 41183 17999900 ~ 18019512 (-) False ranbp3b
XM_039815684.1 mRNA upstream 80683 18151116 ~ 18170489 (-) False LOC120568287
XM_039815688.1 mRNA upstream 80683 18151116 ~ 18170489 (-) False LOC120568287
XM_039815682.1 mRNA upstream 80683 18151116 ~ 18170489 (-) False LOC120568287
XM_039815683.1 mRNA upstream 80683 18151116 ~ 18170489 (-) True LOC120568287
XM_039815689.1 mRNA upstream 82764 18153197 ~ 18170489 (-) False LOC120568287
TU155671 other downstream 951791 17039800 ~ 17108904 (-) False ly97.3
TU155672 other downstream 1015633 17043126 ~ 17045062 (-) True G115406
TU155670 other downstream 1019219 17039800 ~ 17041476 (-) True ly97.3
XR_005640632.1 other downstream 1258431 16756331 ~ 16802264 (-) False epb41l3b
TU155525 other downstream 1420883 16637108 ~ 16639812 (-) True G115312
XR_005640621.1 other upstream 412723 18483156 ~ 18494488 (-) False sppl2
TU156258 other upstream 646449 18716882 ~ 18718544 (-) True LOC120568909
TU156342 other upstream 774472 18844905 ~ 18846277 (-) True G115941
TU156358 other upstream 861541 18931974 ~ 18935477 (-) True LOC120568972
TU156517 other upstream 1151358 19221791 ~ 19222726 (-) True G116084

Expression Profile