RNA id: XM_039816611.1


Basic Information

Item Value
RNA id XM_039816611.1
length 3993
RNA type mRNA
GC content 0.48
exon number 14
gene id LOC120568870
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 8925810 ~ 8941447 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AATGAGCTGAGCAAAAACGTCTTGACACATCAGAGCAGCTCATTTTAGTTGACATGCATTTCGTATCCTGTGAATACTGTGTATACATATTCAGATAACTGAATTAAGCTTTTCATTTGATAAGAAGGGAAACAGATACAGTATGGGAGCATCTTCTTCTGGCTTGTTGGATGAGGCTAAAATCAGCAACATCAAAGGACTTGTTGACAGTGCGTTCCAGAGCTTCAGTGTGTTTTACCGTCAGCAGTACTCTGCAGCCTACACCGGACATATACACCAGGAGGTGGAGCCTAAGAAAGAGGGGAGGGGCCTATTGCTCACACCCGGGcctcAGTATGCTCGGGAGGAAGTGCTGTACCAAGGGAGTGTAAAGTTCTCCTGCTGGGATGATCAGGGAAAGAAATGCAGAGAGAGATACGCGGTCCTAAAAGGAGTCTACAAAGTGGAGATACATGAAAACATGGAGACTTTCAATCGTGGATGTTCAGCGAAGTTGGTCCTCCAGCCAGCGGGGGGCAGTGTGTTCACCACAGAGGAGGAGTCCAGAGCTCACCTGGAGCAGACCTGTGCTGGAATACTCAATGgagCGAAGGAGGATTCTTCTTCGCTGGTATCATCTCCAGATGTGCCTGCTGTATATCTGCACCAGCCTTATATGGGCCACACCTGCTTCCTGTTCCAACAGGAAGAGGAACGAGATAATTTCCTGTCTGCCCTCAAGACCTGCATAAGACACGGCAACCTTGACCCCTGGTGTGATCCATCCTATGAGAGCCAGGCGTACGTCCGAGCCCTCCGACTCTACCGACAGGACAAAGGATGCTATGAATCCTGGGAAAAGCTGCTGGGCACTGAGGAACaaGTGCTGGCGTCCCAGGTGATGGAggaagtgttgtcatggttacaGAGTCAGCTGCAGTCCAGAGTGAAGGGCAAGAAGACAGAAAGGATACGACAGTGGTTGGCAACAATGCAGGCAACCTACACTTTGGTGCTGGTACAACTCACTGCAAGCCTGGAGGCTCTGAGGGAGGAGTGTCGTCAGACAGCATCAGCCAATCAGGCACTAATCAGATCCAACCTGGACCAGATCATGTCTTCTCACTGCTTCCTGGAGGAAAAAGTCAAAGtgtgCCTATGTGAAGAAGCAGAGAAAGTGTGCAGTGAGTCTGTAGCACCCTACATCTCCTCCATCCTTGAAGCGCTTACAGAAAACATAAGTGCAGGGATTCATGGGATgcaacacacactgcacacacagatggactcagccttcacacacacaattggaGGAACGGAGGAGACAAAGATGgcCTTGTCCACTCTGCGTTCCATCAGTCTGGATCAGTGCTACAGGCAGGTGGAGAACCTGGCAGGGCAACTTGAAGACTTAAAACAGCGGTTCGGATTGAGCAGCACTCAGAGACTGGTTCACTCTGCACACATGGAGATGGAGAAGCTGTTGAACAGTGCTGTGTACACCTTAGAGCTGTTCCTCCAGTCATCAGCCAGACTGCAGCCTTCTCAAATTCCTGTCAAGATGGAAAGAGCCAAAGAAAGAGTCCTGAagcagCTGGACTATGACAGCAGAGTTGTCCAGAGGAGGCTCTACCAGGAAGCTCTCCTGGAGATCACTCTGCCTGCTCTCACCAGGAAGATGGACAACAAGTGGAAAAGTgagctgcagcagttcGAGCAGTACATTTTCTCAGACTACAGCAGTTTTATCCTGGTTCATAATATCTATGATGATGTACTGAGAAACATCCTCAGTAAGGAGATAGagacagTTGTCCAGGATGTAGCCAGCAGGAAGAGTAACAGTCTGTTATTGGACACGGCAGATATGGCCATTAGTCAGTACAGCCTGCTGGGGCAGACACCACCTCGCACTGCACCAGGCAGCCCAGCCGTTGGCACTCGAGACTCCTCTTCAGCAGCAGCGCCACCCGGTGAAGGCAAAGAACCTGGTCCTGTGGTGGAGGACGGAGACAGTCCCACGGTCCCAGCTGAGGTTTCCCCTCAGAGTGACCCAGATCTTAACGCTGATGACACCAGTAGCACTCAGCGCTGTGACCAGAACACAGTGCTTCTCTCTCCTGCGATCGTTGTGACGCGAGACTTCTCTGCAACCGAGGAGGCTTCTTGCGTTGAGGAAACGCGCGAAGAAGCCCAGCTTGGAACTGACACACCATCGACGACAGAGTCAGCTGCGGCCGAATCTTCCAACTCAGCCACAGCTGACTCTGACGCAGCGGTCACACATCAAGTTGGTACACCCGATGCACTTGCTAACACAGATTCCACCAATCCCATCCCAGACTCTCCTGACCTTTCAGTGTCCACTCTGTCCTCACCACAGTCCACAGATGTTCCAGCCGAATGCGCTCAAAGTGATCAATCTGCGATGCCGGAAAGGTCCGCTACACCTGACCTCTCAAGCGCAGAAAGAGGAACCGAAGACACGACCTCCGTCCAGCATCCCGGCCCCCCATCGTCACACCCGCCTTGTACAGGAAACAAAATCAGCCTTGGGTCGCTAAGCGAGGCCATTGGTTGCAACTCCGCGGCACTTTCTGTAACGCAGACGATGGCACAGCACGGCCTTGACAGAGCGGTCTACTTGACAGGAGAAATAAAGGACAACTGGGAGATGGAGAGGgtaaaagaggagaaaaataaAGAGGCAGCGGAGGAGAAAGAGATAGATAAGATATGTGAGAGCATCAAAGACGGGAAGGAAGAGATACAGGCAAGAGAAGGGAAAGAAGAGGCGGTAGAGGAGGTGAGAGATGAAGGTGTAGCCCAATCAGAAGGTGAGCCCGTTGGCGAAGCTGGCCAATCCTCTGAATCGCCAGTAGAGAGCGCCACTGCCTTAACCACAGAGCAGAGAGCGAGCGAAGAGAGGGTGGATGGAGAGAAAGATAGTGAGCTTGAGACTGAGAAAAGTCAaggtgaggaggaagaagaggagaaagcaGATCAAGCTGAgatagaaggaaagaaagaaaaagaggaggtTCTCCAAAGCCCTCAGCCAATGGGATCGCAGCCAGAGAGTACTGCTGAGCTGCCATTGGACAGTGTGGCTATTATCAGAGATCTTGTGGTTGAGATTACTGAAGTGGAGACAGTAATCATCCCCTGTTCCGACAGCAGCCATACACCCTGACAGCCACGTTACCACGACAACTGACTGCTGGATCTCCCGCCCAGATCTACTTCCCTAACAGCTACTTCAGTTTCTTATTAAATAGTGCAAAGAATAGAGGTGAAAGAAGAGGGGGAGTGAGAAAGTCCAGACAGGAGGTTACAGTATTATTTTTGTGTCACATTTAtacttttatattttgaaaaatacaaaaacttagtttttatttttactttaggACGGCTGCAACTAACCATGATTTTTGATTGTAGATTATTTCTGTCCATTTTTTTCCGATTAATCGATTTACTTGTTTGGGCTTAGAAAAGTTTCTcccactgaccattacgcaagcaataatttatttagaaaaatacgtTTCGATCTTAGACCTTCATCATCCTActcacctgcccgacaaaagaggtgtgcaaaaaagctttcctacgtTGCActgagttgtttggtctataaaatgtcagcaaaatggtaaaaaatgtcattcagtgtttcccaaaaccTAAGACGACATcgaatcaaatgttttgttttgtccacaactcaaagatattcagtttactctcAAAGAGTGAAGAAACTAAACAAATGTTCACATTTAAGATGCTGGAATTAGATAATCTTTCCtcctatttttaaaataaaaaatactttttgattaattgattatcaaaatagttttcaGCGATTCATTTCAATTTTTCTTGACAAATGCTACAACTGCTTTTGACTTCTGCTGTTTACATTTGCCGTTTTATTTTCTGCACTGCACGGAAATGGATAAAACGACCCAATAAAGAACTTGTCAGCGTTATGATGTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152506 lncRNA downstream 54887 8870700 ~ 8870923 (-) True G113118
TU152488 lncRNA downstream 98366 8826367 ~ 8827444 (-) True G113106
TU152309 lncRNA downstream 388666 8510833 ~ 8537144 (-) False G112988
TU152310 lncRNA downstream 409054 8510833 ~ 8516756 (-) True G112988
TU152308 lncRNA downstream 415433 8508598 ~ 8510377 (-) True G112987
TU152518 lncRNA upstream 2038 8943485 ~ 8943752 (-) True G113129
TU152561 lncRNA upstream 30161 8971608 ~ 8973660 (-) True G113168
TU152589 lncRNA upstream 119448 9060895 ~ 9063239 (-) True G113194
TU152657 lncRNA upstream 173066 9114513 ~ 9168419 (-) False chd7
TU152841 lncRNA upstream 427619 9369066 ~ 9388932 (-) False G113356
XM_039814727.1 mRNA downstream 56016 8863071 ~ 8869794 (-) False rab36
XM_039814725.1 mRNA downstream 56571 8863071 ~ 8869239 (-) False rab36
XM_039814726.1 mRNA downstream 56571 8863071 ~ 8869239 (-) True rab36
XM_039816140.1 mRNA downstream 64156 8830077 ~ 8861654 (-) True depdc5
XM_039816747.1 mRNA downstream 146469 8765172 ~ 8779341 (-) True mrpl37
XM_039816782.1 mRNA upstream 37221 8978668 ~ 8985335 (-) True dusp12
XM_039816783.1 mRNA upstream 55316 8996763 ~ 9027991 (-) True LOC120569001
XM_039816785.1 mRNA upstream 55316 8996763 ~ 9027867 (-) False LOC120569001
XM_039816784.1 mRNA upstream 55316 8996763 ~ 9027867 (-) False LOC120569001
XM_039816407.1 mRNA upstream 172937 9114384 ~ 9173349 (-) True chd7
unassigned_transcript_549 other downstream 30687 8895050 ~ 8895123 (-) True trnan-guu_8
unassigned_transcript_547 other downstream 33806 8891931 ~ 8892004 (-) True trnan-guu_6
unassigned_transcript_540 other downstream 52328 8873410 ~ 8873482 (-) True trnak-cuu_1
unassigned_transcript_538 other downstream 53305 8872434 ~ 8872505 (-) True trnag-ucc_9
TU152428 other downstream 135768 8780452 ~ 8790042 (-) True G113070
TU152846 other upstream 460295 9401742 ~ 9403612 (-) False LOC120568397
TU152847 other upstream 460295 9401742 ~ 9495752 (-) False LOC120568397
TU152848 other upstream 565601 9507048 ~ 9510481 (-) False LOC120568397
TU153067 other upstream 1945560 10887007 ~ 10888847 (-) False LOC120567758
unassigned_transcript_557 other upstream 1945642 10887089 ~ 10888952 (-) True LOC120567758

Expression Profile