RNA id: XM_039816616.1


Basic Information

Item Value
RNA id XM_039816616.1
length 1043
RNA type mRNA
GC content 0.41
exon number 5
gene id ift22
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 20336698 ~ 20339393 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTTACTCGAGTTTGCTGCCATGGTATCTAAAACAATGTTTGGGTaaccttatatatatgtcaatgggttaCCTCAAGTTACGAAGATTAGTAACAGTTTGTACATTTCATTGAGTGAAACTCAAAACCCAGCATAGCATTGTTCAGATATAGCTACACTCAGTTTAAAACGCAGTGTTAtttaacttgttttggtggcgTAACGTACCTTAGccctgccagagcttcttcaGTCGAAGTTAGCtggacagctagctagctagctaacgttagcgttaaTGTTCGGCGAGTGGAAATGTTCAAAGCAAAAATACTCTTTATTGGACCCACTGAGAGTGGGAAAACAGTTGTTGCTAATTTTCTCTCAGACACAGCAGCAGAAAATGTTGGAGGTGAATACAGACCTACTCAAGGAGTAAGGATACTGGAATTTGAATCGCAACCTGAAGGCAGTGGTGACTATGCAAAATGTGAGGTTGAACTTTGGGACTGTTCAGGAGATTTTAAATTTGAATCATGCTGGCCTGCACTGATGAAGGAATCCAGCGGTGTGGTGATCATTTTTAATCCTGACGTTCCAAGTCACCTCAAAGAAATAGAGACGTGGCATTCGATGTTCATCTCCTCTCAAGGTTTGCAGGACAACCAGTGTTTACTCGTGGCTCACCACAAGCCTGGCAGCGGAGTAGAAGATGGACGGCTGCATTTAGCCTCACATTTGGCCAGACTGCCACTTATTCACTCCAACCTGGAGGAGGAACCAGAGGAGGTGGGGAATGCTTTCCGCAGATACTTGGGAAATGTTATAAATACAATGTCAGAAAGCCGAGAGCAAGAGGAGATGTCCATTATTACATAACAGCAAAATCTATAAAATATGCAGCTTAATGAAGACATTTTTTGGCATCAGCAATCTCTGTTCAAGTGACATTCATCAACATTTCCCATTTGTAAAGTTATTAATTACACATCTTTGCTGTCAGCTGTACATGAAATCTTCCAAAACCCCttgcaatgtttaaaaaaatatatattttactaca

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07935 IFT22, RABL5; intraflagellar transport protein 22

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU156823 lncRNA downstream 10824 20325649 ~ 20325874 (-) True G116328
TU156782 lncRNA downstream 399285 19924212 ~ 19937413 (-) True G116292
TU156784 lncRNA downstream 454289 19879905 ~ 19882409 (-) True G116293
TU156743 lncRNA downstream 584504 19745702 ~ 19752194 (-) True G116274
TU156737 lncRNA downstream 657268 19679189 ~ 19679430 (-) True G116268
TU156868 lncRNA upstream 48105 20387498 ~ 20388062 (-) True G116366
TU156870 lncRNA upstream 50964 20390357 ~ 20391720 (-) True G116368
XR_005640772.1 lncRNA upstream 241127 20580520 ~ 20585677 (-) True LOC120568747
TU157004 lncRNA upstream 429242 20768635 ~ 20771028 (-) True G116484
TU157021 lncRNA upstream 466760 20806153 ~ 20806691 (-) True G116499
XM_039816380.1 mRNA downstream 117903 20208710 ~ 20218795 (-) False atp6v0b
XM_039816379.1 mRNA downstream 119400 20208710 ~ 20217298 (-) True atp6v0b
XM_039814826.1 mRNA downstream 129204 20026059 ~ 20207494 (-) True b4galt2
XM_039814789.1 mRNA downstream 316437 19998293 ~ 20020261 (-) True ccdc24
XM_039814791.1 mRNA downstream 316472 19994125 ~ 20020226 (-) False ccdc24
XM_039814622.1 mRNA upstream 9116 20348509 ~ 20351231 (-) False LOC120567661
XM_039814620.1 mRNA upstream 9116 20348509 ~ 20351231 (-) True LOC120567661
XM_039816631.1 mRNA upstream 69742 20409135 ~ 20415934 (-) True pter
XM_039816477.1 mRNA upstream 99074 20438467 ~ 20455876 (-) True mmp16b
XM_039816478.1 mRNA upstream 103197 20442590 ~ 20455878 (-) False mmp16b
TU156767 other downstream 540989 19793834 ~ 19795709 (-) False xcr1b.1
TU156578 other downstream 871318 19464700 ~ 19465380 (-) True G116138
TU156517 other downstream 1113972 19221791 ~ 19222726 (-) True G116084
TU156358 other downstream 1401221 18931974 ~ 18935477 (-) True LOC120568972
TU156342 other downstream 1490421 18844905 ~ 18846277 (-) True G115941
TU157096 other upstream 668656 21008049 ~ 21010569 (-) False higd1a
TU157655 other upstream 1922605 22261998 ~ 22263498 (-) False G116969
TU157659 other upstream 1923730 22263123 ~ 22268559 (-) True G116969
TU158039 other upstream 3090973 23430366 ~ 23430992 (-) True G117259
XR_005640657.1 other upstream 3129227 23468620 ~ 23491612 (-) False LOC120568062

Expression Profile