RNA id: XM_039816638.1


Basic Information

Item Value
RNA id XM_039816638.1
length 3321
RNA type mRNA
GC content 0.53
exon number 27
gene id lig1
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 31942203 ~ 32016352 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGGCTGGGATGTCACTTTGGCGCCGAATATTTGTCATTCTGCAGCGCGGGAGTTAGTTGGTGTATTTTTATGTGGATGTTGGATCCTGTGCTTTAATTTAACCATTAGTCTTAATCTAGTATCTATTAGGTGAAGGACGAATTTGAAGACAACATGCAGCGGAGCATCGCATCCTTCTTTCAGCCCAAGTGCAAGGACAAGGATATGCAGAAGAAATCCACAGATGGACCAGTGAAaaaACCTGTGAAAAGCCCTCTCAAGGTGCAGAACGGTGTTCAGAAGGCTGATTCACCCGTCACCAAGAAAGTTGCCAAACGCAGCCGTCAGATCCTGGACAGCGATGATGACGACGCGCCGGTCATTAAAGAGCAAGTCGCCACCAAGGGATATGGAGACAAAGAAGCTCTTGGTAAAACTGAAAAGAAGGATGCTGTCTTTACGGCAGTTCCCACCCCCCTGTCTCCTCCACCTGCCCCGGCCACCCCTGTAACTCCCGCTACTCCAGCCACCCCAGCTTCTTCGGCTTCACCCGGGACCCCCGGCACCCCAAACTCCATCTCCCCCTCTGGCATCGTTAAACGCAAGACTGCGAGGAAGATGTTCCCCAAGAGGAAGCTGGATGAGAGCAGGAGCGGCAGTGAGAGTCAGAAAGACGAAGCAGAGGCCAAGGAGGAGCAGGGTCAGCAAAACAAACGCGCCCGTGTGGAGAACAGCGCCAGCGGCACAGGGAACACAGACAAACCCATGGACGAGGacacaaaggaagagagagTTGAAAAGGCAGTGGCCGTGGCTAACAGCccagatgaggaggaggtgaagaagaagaagagagaggaagaagagaaggcCAAGGAGGAGGAGCGGGTGAAGCAAACGAGCTCTgatgagaaggaaaaaaaagctgaGGGGGCGGAAAATGAAGAGGAAGCAAAGGAGAAGACAGATGATGAGAAAAGGCCTGCCACTGCCAAGAAGAAGGAGGCGGTTGAAAAGGACACGCAAGAGGGAGAAGGGAGCCCAAAAAGTCAAACGGCGAGAAAGCAGAAAGAAGCAAAAGAGCAGAAAGATAAGGAGCCGCCCAAGAAAGCCCCCATCAGCAGTTTCTTTGCTCCAAGAAAAGCTGCAGTGAAGACGGAGAAAGCAGAGGAGAGTGAAGGGGAGAAAAAGACGAGTGCAGAGAGGAAGCCCTCAGCAGAGGACAGTAAAGACACAAAAAGTGAGTCGACCTCCGGACAAACGGACTACGATCCGTCCAGGCCCAAATACCATCCTGTGGACCATGCCTGCTGGAAGCAGGGCCAAAAAGTGCCGTACTTGGCGGTGGCTCGCACCTTTGAGAAGATTGAAGAGGACTCTGGCAGGTTGAGAAACATCGAGACGCTGTCGAACCTGCTTCGCTCCGTGCTGCTGCTCTCTCCAGATGACCTGTTGtgctgtgtgtacctgtgtttgAACCAGCTCGGTCCTGCCTACCTGGGGATGGAGCTTGGTGTTGGAGAGACGGTGCTAATGAAAGCTGTTGCTCAAGCaactgGGCGACAATTGGACAAAATCAAGGCAGAGGCGCAGGAGAAAGGTGATTTGGGCCTTGTGGCCGAGAGTTCCCGTAGCAACCAGCGCATGATGTTTCAGCCAGCCAGTCTGACAGCAGGGGGCGTGTTCAGGAAATTGAAGGAAATTGCCAGCATGAGTGGGAACTCGGCCATGAATAAGAAAATCGACATCATCAAAGGCCTCTTTGTGGCATGCCGCTTTTCCGAGGCCCGCTATATAGTCAGGTCTCTGGCTGGGAAGCTGAGGATAGGCCTGGCTGAGCAGAGTGTCCTATCTGCACTGAGCCAGGCTGTGTGCCTGACCCCCCCTGGACAAGGTTTCCCTCCCGCTGTGATCGACGCAGGGAAGGGTATGAGCACTGAGAGCAGGCGGGCCTGGATCGAAGAGAAGAGTCTCATTCTCAAACAGACTTACTGCGAGATGCCCAATTACGACGTCATCATCCCTGTTCTGCTAAAAGAAGGCATAGACGAGCTACCCAATCACTGCAAGCTCACTCCAGGTGTGCCGTTGAGACCCATGTTGGCTCACCCCACCAAGGGTGTCGGCGAGGTGATGAAGAGGTTTGACGAGGCGGCGTTCACCTGCGAATACAAATACGATGGAGAGCGAGCACAGATTCACATTCTGGAGAGTGGCGAGGTTCGCGTATTCAGCCGCAACCAGGAAGACAACACCAGCAAATACCCCGATATCATCTCTCGCATTCCCAAGGTGAAGAAGGACTCTGTGGTGTCGTGCGTCCTGGACTCTGAGGCGGTGGCCTGGGATCGGGAGAAGAAACAGATCCAGCCCTTCCAGGTCCTAACCACCCGCAAGAGAAAGGACGTGGATGCTTCTGAGATCAAAGTCCAGGTGTGCGTGTACGCCTTTGACCTGCTCTATCTCAACGGCGAGtCTCTAGTGCGACAGCCGTTGAGTCGGCGTCGGGCTCTGCTGAAAGAAAGCTTCTCAGAGGTGGAGGGAGAGTTTGTGTTCGCCCGATCCATCGACTCCGACAACACCGACGCCATCGCAGAGTTCCTGGAGCAGTCTGtccgagactccTGCGAGGGTCTAATGGTGAAAACTCTGGAGAAGGATGCCACCTATGAAATTGCCAAGCGCTCTCACAACTGGCTCAAGCTGAAGAAAGACTACCTGGACGGGGTGGGCGACACAGTCGACCTGTGTGTTATCGGCGCCTACCTGGGAAAAGGCAAGAGGACGGGCACCTACGGGGGCTTCCTGCTGGCCTGCTACGACGAGGACAACGAGGAGTTCCAGTCAGTCTGcaagATCGGGACAGGCTTCAAGGATGAAGATCTGGAGCAGCATTACAAGTTCTTAAAGGAGCACATTCTGCCCAAGCCCCGTGCCTACTACCGCATCGACCAATCAGCAGAGCCCGATGTGTGGCTGGACGCCGTGCAGGTTTGGGAGGTGAAGTGCGCTGACCTGTCGCTGTCGCCCGTCTACAAGGCCGCTATGGGAATGGTGGATCCAGAAAAGGGCATTTCTCTGAGGTTCCCTCGCTTCCTTCGGATCAGAGACGACAAGAAGCCCGAGGACGCCACGACCGGAGCTCAGATTGCTGATTTGTacaagaagcagcagcagattcAGAACCAGGGTGAGAAAGCTGACCCCGAGGACTACTACTGATCAATTGTAGTCATCAGCAGAGAATAATAAATAATGGCAATTtcaaaaataattgtaaatagcttcttttctttatgtaatttcaaatgaaaataaaggctCTTTGCCAGTTTTAAGCA

Function

GO: NA

KEGG:

id description
K10747 LIG1; DNA ligase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160760 lncRNA upstream 26602 31849440 ~ 31915601 (+) True G119332
TU160757 lncRNA upstream 27499 31912678 ~ 31914704 (+) True pip4p1a
TU160753 lncRNA upstream 99232 31838382 ~ 31842971 (+) True G119328
TU160729 lncRNA upstream 210913 31730145 ~ 31731290 (+) True G119306
TU160703 lncRNA upstream 299005 31641354 ~ 31643198 (+) True G119285
XR_005640633.1 lncRNA downstream 39703 32056055 ~ 32059373 (+) True LOC120567918
TU160858 lncRNA downstream 108212 32124564 ~ 32124915 (+) True G119398
TU160878 lncRNA downstream 324773 32341125 ~ 32341363 (+) True G119409
TU160886 lncRNA downstream 331769 32348121 ~ 32349713 (+) True G119415
TU160887 lncRNA downstream 348214 32364566 ~ 32364768 (+) True G119416
XM_039816640.1 mRNA upstream 2725 31929145 ~ 31939478 (+) True LOC120568893
XM_039814662.1 mRNA upstream 27628 31888908 ~ 31914575 (+) False pip4p1a
XM_039814661.1 mRNA upstream 72708 31866987 ~ 31869495 (+) False dnaaf6
XM_039816635.1 mRNA upstream 76968 31860730 ~ 31865235 (+) True eif3f
XM_039816757.1 mRNA upstream 488743 31431806 ~ 31453460 (+) True LOC120568980
XM_039816189.1 mRNA downstream 15300 32031652 ~ 32051433 (+) True mpz
XM_039816190.1 mRNA downstream 15300 32031652 ~ 32047643 (+) False mpz
XM_039816191.1 mRNA downstream 15301 32031653 ~ 32051435 (+) False mpz
XM_039814663.1 mRNA downstream 51211 32067563 ~ 32071312 (+) True LOC120567694
XM_039815958.1 mRNA downstream 58724 32075076 ~ 32115947 (+) True LOC120568430
TU160769 other upstream 29596 31888928 ~ 31912607 (+) False pip4p1a
TU160764 other upstream 73410 31865755 ~ 31868793 (+) True dnaaf6
TU160672 other upstream 481295 31459864 ~ 31460908 (+) True G119257
TU160516 other upstream 742189 31198960 ~ 31200014 (+) False G119123
TU160502 other upstream 745970 31171217 ~ 31196233 (+) True G119114
TU160818 other downstream 51260 32067612 ~ 32071300 (+) False LOC120567694
unassigned_transcript_563 other downstream 110005 32126357 ~ 32126430 (+) True trnar-ucu_14
TU160865 other downstream 172628 32188980 ~ 32226483 (+) True cadm3
TU160866 other downstream 172720 32189072 ~ 32226483 (+) False cadm3
XR_005640735.1 other downstream 436353 32452705 ~ 32455106 (+) False LOC120568569

Expression Profile