RNA id: XM_039816640.1


Basic Information

Item Value
RNA id XM_039816640.1
length 1097
RNA type mRNA
GC content 0.57
exon number 5
gene id LOC120568893
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 31929145 ~ 31939478 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGCAGTACAGCTGTAGCTCTTCAGCAGGACACCTTTCCTCGCCTTACTGGAGTagaaCAATGCTCTTCCCTGACTGGGCCTACAAACCAGCCTGGTCACCGGGCTCCAGGCAGGTCCAGCTGTGGCACTTCCTGTTGGAGCTGCTGGGGCGGGGGGAGGGCGGGGCCATCGGCTGGGGAGGGGAGTGGGGCGAGTTCGTCATCCGGGACCCCGAGAGGCTGGCCAGGCTGTGGGGGGAGAGGAAGGGCAAACCACACATGAACTACGACAAGCTCAGCCGGGCGCTCAGATACTACTACAACAAACGCATCCTGCACAAGACCAAAGGGAAAAGATTCACCTACAAGTTCAACTTCAGCAAACTCATCCTGGTCAACTATCCAGGATAcccaccacctccaccaccaccaccaccaccacccccgaGCCATCAGCTGGTGCCGAGCGGCCCTCttccctttcctctcctccccacCGAGAGCGCTCTGCCCCTGTGTGGAGGAGTGGGCTCGCTGATGGACAGAGGAGTCCAGTCTGTGCCTCACCCCTTCCTGCTCCCGTGCTGCCTCCCTAAGTCCATCCCGACCCCCAGGGGGGCTCTCCACGGCCACTTTCCCTACATCTCCGCCCCTGCACGTCCGGGGGCCGACATAAGGGAGGCAGGCCTCCCGCAGCTCCCCTCGGCCCTCCATGTGAGCGCCAACGGCTGGCCGAACAAGAGCCCTGCAGGGTGGGATCTGAACCACATCAGTCGAAGCCTGTTTAGTGGAGTGAAGCAGACTGAAAttcaaggagaggagaggagagcggGGAATAACGCACagatgggggagagagagtgagaaagaggaACAATGTACAACAGATGGACTGCTTTGCCTCCTCAAATCTCTCAAATACTGCTTTTTTAAAGTCATTGaacagtagtttatttattgagTTGggccatggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtttgatagaAATACTGAGGAAGCGACTTTTCTTCTGTCAGCACTTCTTGGCACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU160760 lncRNA upstream 13544 31849440 ~ 31915601 (+) True G119332
TU160757 lncRNA upstream 14441 31912678 ~ 31914704 (+) True pip4p1a
TU160753 lncRNA upstream 86174 31838382 ~ 31842971 (+) True G119328
TU160729 lncRNA upstream 197855 31730145 ~ 31731290 (+) True G119306
TU160703 lncRNA upstream 285947 31641354 ~ 31643198 (+) True G119285
XR_005640633.1 lncRNA downstream 116577 32056055 ~ 32059373 (+) True LOC120567918
TU160858 lncRNA downstream 185086 32124564 ~ 32124915 (+) True G119398
TU160878 lncRNA downstream 401647 32341125 ~ 32341363 (+) True G119409
TU160886 lncRNA downstream 408643 32348121 ~ 32349713 (+) True G119415
TU160887 lncRNA downstream 425088 32364566 ~ 32364768 (+) True G119416
XM_039814662.1 mRNA upstream 14570 31888908 ~ 31914575 (+) False pip4p1a
XM_039814661.1 mRNA upstream 59650 31866987 ~ 31869495 (+) False dnaaf6
XM_039816635.1 mRNA upstream 63910 31860730 ~ 31865235 (+) True eif3f
XM_039816757.1 mRNA upstream 475685 31431806 ~ 31453460 (+) True LOC120568980
XM_039814660.1 mRNA upstream 917821 31007722 ~ 31011324 (+) True LOC120567691
XM_039816638.1 mRNA downstream 2725 31942203 ~ 32016352 (+) True lig1
XM_039816639.1 mRNA downstream 2725 31942203 ~ 32016352 (+) False lig1
XM_039816189.1 mRNA downstream 92174 32031652 ~ 32051433 (+) True mpz
XM_039816190.1 mRNA downstream 92174 32031652 ~ 32047643 (+) False mpz
XM_039816191.1 mRNA downstream 92175 32031653 ~ 32051435 (+) False mpz
TU160769 other upstream 16538 31888928 ~ 31912607 (+) False pip4p1a
TU160764 other upstream 60352 31865755 ~ 31868793 (+) True dnaaf6
TU160672 other upstream 468237 31459864 ~ 31460908 (+) True G119257
TU160516 other upstream 729131 31198960 ~ 31200014 (+) False G119123
TU160502 other upstream 732912 31171217 ~ 31196233 (+) True G119114
TU160818 other downstream 128134 32067612 ~ 32071300 (+) False LOC120567694
unassigned_transcript_563 other downstream 186879 32126357 ~ 32126430 (+) True trnar-ucu_14
TU160865 other downstream 249502 32188980 ~ 32226483 (+) True cadm3
TU160866 other downstream 249594 32189072 ~ 32226483 (+) False cadm3
XR_005640735.1 other downstream 513227 32452705 ~ 32455106 (+) False LOC120568569

Expression Profile