RNA id: XM_039816643.1


Basic Information

Item Value
RNA id XM_039816643.1
length 694
RNA type mRNA
GC content 0.49
exon number 7
gene id LOC120568896
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 25808021 ~ 25811280 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACTTCACTCTCCTGTTGGGGTTCCTACTTTATGATGCTCAACCAGCAGCTCCAACAGGCTGTGCAGGTCCACCCGTGCTGTGTTGTACTGGTCAAAAAAACTCTTGCTCCAGAGGATGTTTCTGTGATGAGGGCTGCTTGCAATCGGGCGACTGCTGTCCTGACTACAAGTCCACCTGCATGCAACCTTTTACCACTGCACCACCAATCACACCCAGCACAACAAGCCGCAGTACTACATCTACACTGGCGAATGACATCACAACTTCTTCACCCACTGTCTCGTCAGCACCAAATACAACATCTACACTGATGGAAGGGAGTGCAACATCAGCATCTACTGTCTCTGTTACTACAGCAACCAGCCAAACAAGCAGCAGCTCACCTGCACCAGCAGATAACGGCACAACTTTAGCTACAGCAGGAACAACACCGACAGACACCAGGACAACTCTGGATACCACTAGTGTCACATCTTCACCAGCAGATACCTGTATAGTGGCCATTAACCTAAAAGCTTATGTATTATCCCAGAATGGGGAAAAAGAAGATGTGATTTTTGAGGCTATCTCCAATTTTATTTCCCAGACCCTTCTCCAGCTGAACTGTGAGGGCTGCTCATCAACTATCAGACACATCAAACGCACCTGAGAAAGGCCAATGTCTCAGCCAACGGGAGCACCAGTGTGGCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158810 lncRNA upstream 14067 25775891 ~ 25793954 (+) False LOC120568895
XR_005640804.1 lncRNA upstream 14830 25782175 ~ 25793191 (+) True LOC120568901
TU158801 lncRNA upstream 58233 25749435 ~ 25749788 (+) False LOC120568894
XR_005640686.1 lncRNA upstream 677092 25125831 ~ 25130929 (+) True LOC120568228
TU158635 lncRNA upstream 689519 25118231 ~ 25118502 (+) True G117704
TU158824 lncRNA downstream 18484 25829764 ~ 25830695 (+) False G117829
XR_005640803.1 lncRNA downstream 61049 25872329 ~ 25873402 (+) True LOC120568900
TU158831 lncRNA downstream 69224 25880504 ~ 25888841 (+) True LOC120568898
XR_005640801.1 lncRNA downstream 69307 25880587 ~ 25888832 (+) False LOC120568898
TU158841 lncRNA downstream 93633 25904913 ~ 25905131 (+) True G117845
XM_039816642.1 mRNA upstream 30344 25773777 ~ 25777677 (+) True LOC120568895
XM_039816641.1 mRNA upstream 34553 25743327 ~ 25773468 (+) True LOC120568894
XM_039815787.1 mRNA upstream 250389 25376185 ~ 25557632 (+) True LOC120568352
XM_039816728.1 mRNA downstream 120261 25931541 ~ 25944450 (+) True acsl3b
XM_039816730.1 mRNA downstream 148526 25959806 ~ 25963171 (+) True scg2b
XM_039816731.1 mRNA downstream 157330 25968610 ~ 25972306 (+) True LOC120568964
XM_039816732.1 mRNA downstream 157330 25968610 ~ 25972306 (+) False LOC120568964
XM_039816734.1 mRNA downstream 157625 25968905 ~ 25972306 (+) False LOC120568964
TU158814 other upstream 14067 25775891 ~ 25793954 (+) False LOC120568895
TU158802 other upstream 52131 25755093 ~ 25755890 (+) False LOC120568894
TU158583 other upstream 853774 24950568 ~ 24954247 (+) True G117664
TU158470 other upstream 1132268 24667893 ~ 24675753 (+) False LOC120569045
TU158471 other upstream 1132268 24673924 ~ 24675753 (+) False LOC120569045
TU158825 other downstream 18775 25830055 ~ 25830695 (+) True G117829
TU158989 other downstream 404447 26215727 ~ 26217041 (+) True LOC120568800
TU159070 other downstream 584146 26395426 ~ 26402078 (+) True G118011
TU159071 other downstream 588140 26399420 ~ 26402078 (+) False G118011
TU159113 other downstream 605228 26416508 ~ 26418008 (+) True ccl20a.3

Expression Profile