RNA id: XM_039816645.1


Basic Information

Item Value
RNA id XM_039816645.1
length 1936
RNA type mRNA
GC content 0.51
exon number 7
gene id LOC120568902
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 26825716 ~ 26833382 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGAGCAGCAGCGGGGCTTCTGTAGCTTCACCCCGGGCGAGTCTGCACGTTGCGGGGCTGGGGTCTCCACCATGCGTTTGTCCATCACCTCGACCACCGGCAGTCCGGTGGAGCTCACTGTCCCCCGAGGAGAGACTGTGGAGGGACTGAGGACACATATCTCCCACAAACTCCGGCTGCAAAAAAACAGAATCGCCCTCCTGTACAGAGACAAGCAGCTGACTGCAGGCAAACTGTTGGACCTGGGTGTAGCAGATGGAAGCAAACTGACCCTGGTCCCTGCCATTGAAGCTGGTTTAGTGTGCCCCACTGCCAGAGCTGAGAGAACTATGATGGACGTCTTGGAAAGTTTAACAGAAGACCAGATCAGTGACTTCCTGTCTGGGCGCTTGCCTCTGACCATTAAACTGGGAATTGGCGCCCACGTGATGTATGTGCAGCTCCAACTGACTGCACAGAACGTGGCGGAGCTACAGCAGCACCGGGACATAAGAGCTGGGAGCAGCAGCGAGCTTCAAACCGGCCTGCCCGCTGCCGCCAGGATGAGCCATCCTGACTCCTCCACCAACGCCACAGGGTCCACCACCTTACCTGCTTCTCAAAGTTCTGCTGTAGCCCAGGACTCTCCTGACTCTACACCCTCGATCCAAATGAGCACTCAGAGACCCAGAACTTCGCACTCACTCACCACTGCCCCTCCACGTCAGTCCTGTCCTCCACGCTCTACGCTCACatcttctcctcttctttcaACCCCTTCTTTGCCTTCTGGTTGTCCGCATCCCAGCTGTCCACTACCAGCAGCCACACCAATCTGTTCACCTGCTCCCTCCAGCTCCATTCCAGGACCCCAGAGCCCAGCGCTAGCCTCAACCTTCAAAGAGAGTAATGCTCATGCATCATCCACTGCAGAGCCATGCAAGCCGCCAGGAGCAGTCATAGAAAGTTTAGTGAGCCACTCTCCAGGCGTCTTCTCAGGGACCTTTTCTGGCACTCTGGCCCCTTGCAGTCCGAGCAACGTCAGCCATCCTCCACGTGGCATCGCCATCATTCTCCAgatcctcaacgacctcctcaggGCTGCCTTCCACCACCAGGGGGCTCAACCTGCCCCTCCTCATCTCCCCTGTCCTGATGCGAACACCCCAGCCAGCCCCCCCCTCACAGCCGAGgagcaaagcaaagcaaaaagCAAAACACTGGCGACCCAGAAGACCGAGCACCTTAGCAAAACTCCAGGTGAGGAGAGTCATCCCATCTGCTCATCCACACAGGAAATTCAAACACTGCACTGTAAGCTGGAGCGCCTGCAGTTTTTGATGCATCAGAGGCGTCTTCGCAGGCGGACTCGCAGGATCTCACAAACGTCTCACCCATATCAGCATCGTCCCTAGTCTCTTGGACAGAAAAGATCCACTCACTGTGATAGCAATGGCAGCTTGGAAGCCACCATGGAAACCAAAGCTGACCTCTGAACTTGTGGAACAGGTGAAAGAGCATCAGGGTTTGTTGCTATGGTATATAGttttagtatagtatatagttttGTTGCTTTGTTGCTATTTTTAAACTATGAGCGTTTTTGAAGAATGTAAGCCCAAAAAGTCCATGGAGTCTTATTCCTGTGGCTGTCACTGTGCTGAGCATGTTATTTCATCAGAGTCTGTCCTTTAGTGACAATGGCTCTCATTGTTATGTAGCATATGCCACAAAAGGTACACTATACATTTTCATCTTGGTGTTTTGTACAAAGACCTCTAactgtatgtttgtttatgtattccAATGCCTTAAATGTACATGTCTTGAATGTAAACTGTATGTTTTGTTCTGTGCAGGGGATGTTCCTCTAAAATGTTTTACTTATgcaatattaaaatgtaaacacaaggaaggaaagaaaaaaagaataaatgaaaaaatgtaaaacctGGA

Function

GO: NA

KEGG:

id description
ko04260 Cardiac muscle contraction
ko05410 Hypertrophic cardiomyopathy

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU159313 lncRNA downstream 93632 26731877 ~ 26732084 (-) True G118186
TU159297 lncRNA downstream 160535 26661621 ~ 26665181 (-) False G118175
TU159275 lncRNA downstream 224331 26532167 ~ 26601385 (-) True G118165
TU159153 lncRNA downstream 346038 26477463 ~ 26479678 (-) True G118076
TU159151 lncRNA downstream 350760 26473887 ~ 26474956 (-) True G118075
TU159466 lncRNA upstream 127018 26960400 ~ 26963105 (-) False G118308
TU159467 lncRNA upstream 127018 26960400 ~ 26963752 (-) True G118308
TU159486 lncRNA upstream 246625 27080007 ~ 27142908 (-) True G118321
TU159494 lncRNA upstream 285650 27119032 ~ 27190233 (-) True G118328
TU159504 lncRNA upstream 341170 27174552 ~ 27197648 (-) True G118337
XM_039815550.1 mRNA downstream 1146 26821229 ~ 26824570 (-) False cirbpa
XM_039815549.1 mRNA downstream 1146 26821229 ~ 26824570 (-) False cirbpa
XM_039815548.1 mRNA downstream 1146 26821229 ~ 26824570 (-) False cirbpa
XM_039815547.1 mRNA downstream 1146 26821229 ~ 26824570 (-) True cirbpa
XM_039816804.1 mRNA downstream 44618 26777037 ~ 26781098 (-) True armc6
XM_039814506.1 mRNA upstream 21953 26855335 ~ 26880767 (-) True stk11
XM_039814507.1 mRNA upstream 48415 26881797 ~ 26889897 (-) True sugp1
XM_039814508.1 mRNA upstream 51135 26884517 ~ 26889897 (-) False sugp1
XM_039815928.1 mRNA upstream 143634 26977016 ~ 26985046 (-) True LOC120568414
XM_039816759.1 mRNA upstream 153350 26986732 ~ 26990773 (-) True plekhj1
XR_005640672.1 other downstream 1146 26819838 ~ 26824570 (-) False cirbpa
TU159298 other downstream 159764 26661621 ~ 26665952 (-) True G118175
TU158687 other downstream 1902398 24922203 ~ 24923318 (-) True G117732
TU158445 other downstream 2289220 24499380 ~ 24536496 (-) True G117560
XR_005640841.1 other downstream 2804215 24021439 ~ 24021501 (-) True LOC120569138
TU159721 other upstream 837594 27670976 ~ 27675360 (-) False LOC120568986
TU159739 other upstream 880085 27713467 ~ 27714390 (-) False G118524
TU159738 other upstream 884169 27717551 ~ 27718759 (-) True G118524
TU160079 other upstream 2152709 28986091 ~ 28986319 (-) True G118764
TU160179 other upstream 2586997 29420379 ~ 29420652 (-) True G118856

Expression Profile