RNA id: XM_039816650.1


Basic Information

Item Value
RNA id XM_039816650.1
length 984
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC120568905
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 35444236 ~ 35445580 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atggaGGTTGAGGACCGAGCCGAGCTCTGCTTTCCACAGTTCCCAAACACCTCCTGCATAAAGCCCTTGTCTCCTTGGCCCCAAACAGTTACCATTGTGTTCTACTCCATCTCTCCGATCACTGTGACTCTCAACctgctcatcatcatctcaATCTCCCACTTCAGgcagctccacacacccaccaacatcctcctcctctctctggctgtctcagacCTTCTAGTGGGCCTCGTGCTGATGCCTGTAGAAGTTCTCCGAAAaacatcctgctggtttcttggtgaatttgtgtgttctACGTTTACTCTTCTTTCAGTCAACATTCCCTCAGCCTCAATAGGTGACATAGTGCTCATATCAGTTGACCGTTATGTGGCTATTTGTGACCCACTGCATTACACTACTAAAGTCACCGGGAGAATAGTTAAACtcagtgtttgtctgtgttggctcTGTTCTGTTTCCTACAGCCTTCACTTTGTAAAGGATCTTCCGAGTCAACCAGGGAGTTATAAATCCTGCTACGGAGAATGTTTGTTGAACACTGATGACATCTCAATGCTTTTTGATCTTTGTGTTACCTTTATTGTTCCAGTTACTGTCATCATAGCTCTGTATCTGAGAATATTtgccgtggctgtgtctcaggctcgtgccatgcgctctcacattacagctgtcacactccagcattcagtgactccaaaggcaaagaaatcagagctgaaagcagccaggaatCTTGGTGTTCTTGTACTGGTGTTCCTAATTTGTTTCTGCCCATATTTTGTTGTAGCATGGGTAGATGAAAACTGGGTTAGAACTTTAATTGGACAGTTTATACtcattctgtatttttttaactcttgtctaaaccctgtgatATATGCCTTCTtgtacccctggtttagaaaagcagttaaactcattgtaactcttcagatactgcagcctggctcctctgagaccaacatgctgtaG

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0004871 obsolete signal transducer activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640800.1 lncRNA downstream 131972 35311871 ~ 35312264 (-) True LOC120568880
TU162224 lncRNA downstream 238600 35204971 ~ 35205636 (-) True G120484
TU162213 lncRNA downstream 281404 35161860 ~ 35162832 (-) False LOC120567705
XR_005640712.1 lncRNA downstream 331210 35112497 ~ 35113026 (-) True LOC120568377
TU162248 lncRNA upstream 74411 35519991 ~ 35520238 (-) True G120508
TU162251 lncRNA upstream 79400 35524980 ~ 35525251 (-) True G120511
TU162254 lncRNA upstream 111394 35556974 ~ 35557368 (-) True G120514
TU162255 lncRNA upstream 112580 35558160 ~ 35559147 (-) True G120515
TU162257 lncRNA upstream 113888 35559468 ~ 35560029 (-) True G120517
XM_039814777.1 mRNA downstream 13142 35429810 ~ 35431094 (-) True LOC120567766
XM_039814676.1 mRNA downstream 22143 35420748 ~ 35422093 (-) True LOC120567706
XM_039816997.1 mRNA downstream 272223 35169138 ~ 35172013 (-) True LOC120569118
XM_039814675.1 mRNA downstream 281255 35161809 ~ 35162981 (-) True LOC120567705
XM_039815867.1 mRNA downstream 374488 35058781 ~ 35069748 (-) True LOC120568374
XM_039814678.1 mRNA upstream 11285 35456865 ~ 35458205 (-) True LOC120567708
XM_039815620.1 mRNA upstream 274418 35719998 ~ 35722919 (-) False LOC120568237
XM_039815618.1 mRNA upstream 274418 35719998 ~ 35722919 (-) True LOC120568237
XM_039815617.1 mRNA upstream 274418 35719998 ~ 35722384 (-) False LOC120568237
XM_039815622.1 mRNA upstream 346369 35791949 ~ 35809067 (-) False LOC120568240
TU162164 other downstream 430022 35012408 ~ 35014214 (-) False LOC120567704
TU162119 other downstream 548323 34895579 ~ 34895913 (-) True G120390
unassigned_transcript_566 other downstream 675722 34768441 ~ 34768514 (-) True trnan-guu_9
TU161906 other downstream 1040223 34400823 ~ 34404013 (-) False G120230
TU161838 other downstream 1215186 34228626 ~ 34229050 (-) True G120168
TU162546 other upstream 1265630 36711210 ~ 36737250 (-) False LOC120567714
unassigned_transcript_582 other upstream 1554237 36999817 ~ 36999899 (-) True trnal-uaa_10
unassigned_transcript_583 other upstream 1558380 37003960 ~ 37004042 (-) True trnal-caa_5
unassigned_transcript_584 other upstream 1559021 37004601 ~ 37004683 (-) True trnal-uaa_11
unassigned_transcript_585 other upstream 1592931 37038511 ~ 37038593 (-) True trnal-caa_6

Expression Profile