RNA id: XM_039816651.1


Basic Information

Item Value
RNA id XM_039816651.1
length 1093
RNA type mRNA
GC content 0.53
exon number 8
gene id rpl5a
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 33657799 ~ 33661745 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGTTGTCCACCGGGGCCGCAGGGGGCGCTGCCTGCTCAACAGACGGCCCTACTCGTGAGGAAAAGTTGCCAGGTTAACTTCCGCCGCAAAGAGACACATCTGAGTCCAAGAGGAAGGCGAGTAAAATCCGCCTAAAATGGGTTTCGTCAAAGTGGTGAAGAACAAGGCCTACTTCAAGAGATACGAAGTCAAATTCAGGAGAAGAAGAGAGGGAAAAACGGACTTCTTTGCCCGCAAGCGCCTGGTTGTGCAGGACAAGAACAAGTACAACACGCCCAAGTACCGCATGATCGTCAGGTTCTCCAACAGGGACATCTGCTGCCAGATTGCATATGCAAAGATTGAAGGAGACCATATTGTGTGTGCTTCTTACTCTCACGAGCTTCCCAAATATGGCATCACTGTAGGCCTCACTAACTATGCTGCGGCCTACTGCACCGGGCTGCTGCTGGCTCGCCGGCTGCTGCACAAGTTTGGCATGGATCAGGTGTACGAGGGCCAGGTGGAGGTGACGGGAGATGAGTTCAACGTGGAAAGCATTGACGGACAGCCCGGTGCCTTTACCTGTTACCTGGACGCAGGCCTGGCCAGAACCACCACAGGGAACAAGGTTTTTGGAGCGCTGAAGGGGGCAGTCGACGGAGGCCTGGCCATTCCTCACAGCCTGAAACGTTTCCCCGGTTACGACACAGAGAGTAAAGAGTTCAACGCCGAGGTGCATCGGAAACACATCATGGGCATGAACGTGGCCGACTACATGTCCTACCTGAtggaggaggacgaggacgcCTACAAGAAACAGTTCTCTCGCTTCATCAAGAACGGAGTCACGCCAGACACGGTCGAAGAAATGTACAAGAAAGCACACGCCAGCATCCGAGCAAACCCCGCCCACGAAAAGAAAGCCACAAAAGACGTCAAGAAGAAGAGGTGGAATCGCGCCAAGTTATCTCTGGCACAGAGGAAGGATCGCGTCGCCCAGAAAAAGGCCAGCTTCTTACGAGCACAAGAGCAAGAAGAAGGGGACGGTTAGGTGTTCCGCTGCAAAAACCCAACACACATCACAGACAAATAAATTTATTACAAACCCAA

Function

GO: NA

KEGG:

id description
K02932 RP-L5e, RPL5; large subunit ribosomal protein L5e

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU161526 lncRNA upstream 59142 33597873 ~ 33598657 (+) True G119922
TU161502 lncRNA upstream 95728 33538172 ~ 33562071 (+) True G119901
TU161485 lncRNA upstream 142376 33514011 ~ 33515423 (+) False pkn2a
TU161341 lncRNA upstream 367219 33290330 ~ 33290580 (+) True G119767
TU161328 lncRNA upstream 388597 33268370 ~ 33269202 (+) True G119763
TU161561 lncRNA downstream 149331 33811076 ~ 33851937 (+) True gng12a
XR_005640825.1 lncRNA downstream 199693 33861438 ~ 33866996 (+) True LOC120569016
XR_005640826.1 lncRNA downstream 205650 33867395 ~ 33870784 (+) True LOC120569017
TU161570 lncRNA downstream 206024 33867769 ~ 33868000 (+) True G119961
TU161572 lncRNA downstream 206641 33868386 ~ 33868686 (+) True G119963
XM_039816909.1 mRNA upstream 14216 33622388 ~ 33643583 (+) True rpap2
XM_039816910.1 mRNA upstream 14216 33622388 ~ 33643583 (+) False rpap2
XM_039816907.1 mRNA upstream 47196 33602063 ~ 33610603 (+) True cdc7
XM_039816908.1 mRNA upstream 47196 33602064 ~ 33610603 (+) False cdc7
XM_039816901.1 mRNA upstream 56348 33579048 ~ 33601451 (+) True hfm1
XM_039816366.1 mRNA downstream 20956 33682701 ~ 33698786 (+) True mtf2
XM_039816500.1 mRNA downstream 39887 33701632 ~ 33729640 (+) True ccdc18
XM_039816501.1 mRNA downstream 39887 33701632 ~ 33729640 (+) False ccdc18
XM_039816502.1 mRNA downstream 42930 33704675 ~ 33729640 (+) False ccdc18
XM_039815078.1 mRNA downstream 81514 33743259 ~ 33767779 (+) True scinlb
unassigned_transcript_564 other upstream 255477 33402251 ~ 33402322 (+) True trnap-ugg_4
TU161343 other upstream 349935 33304822 ~ 33307864 (+) True G119769
TU161294 other upstream 491699 33163916 ~ 33166100 (+) True LOC120568463
XR_005640727.1 other upstream 610665 32989790 ~ 33047134 (+) False tep1
TU161084 other upstream 876328 32780988 ~ 32781471 (+) True G119585
TU161565 other downstream 196797 33858542 ~ 33859847 (+) True G119957
TU161681 other downstream 293438 33955183 ~ 33957504 (+) True LOC120568585
TU161769 other downstream 502358 34164103 ~ 34165846 (+) False mrpl34
TU161873 other downstream 655403 34317148 ~ 34317766 (+) True G120200
TU161901 other downstream 739056 34400801 ~ 34404001 (+) False rps28

Expression Profile