RNA id: XM_039816659.1


Basic Information

Item Value
RNA id XM_039816659.1
length 3889
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC120568912
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 16685480 ~ 16712264 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCCCCAGTCTCTGAACACAAGTACAAACATCCTCCAGGACGCACGGATGGAGGACGCGCGTAAAAGCTACCGAGCTGCTTTATTTCAAACGTGAACGACAGCGTTGAATTCCGTTAGCGTGTCCAGTAGTAATGTTTggacttttctttgttttctagGTGCTGTTCAGCAGGTACAGCGGGGGTTTTATTCGCTGTAGCGATCCGGAGGCGTGTTTCCTTATGATGCTCGGATATCTCAGAAGTGTATGCTCCCCGCTTTGGATACATAATGCAAGGATTTGTGACGGATTAAACAAGGACGCTGCGTAAAGGAAAACCTGATCTCACCAGTGTGGCCAGTGACGCTTATTTGAATCCTCCAAAGTGCGGAATGGGGCCGTCATCTACACTGCTTATCGTTGCTTTTTTGGGCTGGGCTGAAGGTGGTTCATCTCTTCACTACTCAGATGGTCGATCCAGCCGTCTCTCTCTGGAGAAAACCTTTGGCCGGTCGCTCAAAGACTCCCAGTGCCAACACATGTTGAAGCACCTTCACAATGGAGCCCGAATCGCTGTGCAGATGCCTCCCAACGTAGAGGGTCACTGGGTGTCCACCAGCTGTGAGGTGAGACCAGGCCCGGAGTTCCTGACACGCTCCTACAGTTTCTACTCCAACAACAGCTTTGAAGCTCACCAGTTCTACTACGAGGACAACCACTGCACCAAACCCACCTACACTCTGGTGATCCGGGGTCGTCTGCGCTTACGCCAGGCCTCCTGGATCATCCGCGGCGGTACAGAGGCGGAGTACCACCTCCACCGGGTCCAGATGGTTTGTCACACAGCCACTGTGGCCAAAGAGCTCAGCCAGAGGCTCAACCGCAGCTGCAGAGGGGCCGTTAAGGGCCCCTGGGAGCCCAGTGTGATCTACTCGCTGTGGAGTGAGGAGGGCGGCTACGACTGCTCCAGGGAGCTTAACTTTGCCATGCATGAGCTGCAGCTGCTGAGGGTGGAGAAGCAGTACCTGCATCACAACCTGGATCACCTGGTGGAGGAGCTGTTTCTAGGAGACATCCACACGGAGCCATCCCAGAGGCTGTACTACAAGCCGTCCAGCTACCAAACCGCCCTGCAAAACGCCAAGAACCATGACCACGGCTGCATCGCCTGTCGTATCATCTACCGCTCAGATGAGTTCCACCCTCCCATCCTGCCGCCGCGGGCTGACCTGACCGTCGGCCTGTACGGTCAGTGGGTGAGCCAGCGCTGCGAAGTTCGTCCTGAGGTCCTCTTCCTCACCCGTCACTTCACCTTCCACGACAACAACCACACCTGGGAGGGCAACTACTACCACTACTCTGACCCCGTCTGTAAACACCCCACCTTCACCATCTACGCCCGCGGACGCTACAGCAGAGGGCTACACTCCACCCGCGTCATGGGTGGGACAGACTTTGTCTTCAAGGTGAACCACATGAGAGTAACTCCCATGGACTTTGCCACCACCTCCCTACTCAACGTCTTCAATGGTAACGAGTGTGGAGTGCAGGGGTCCTGGCAGGTCGGGGTGGAGCAGGACGTCACCTTAACCAACGGCTGCGTGGCATTGGGCATCCGTCTCCCCCACACAGAGTACGAGCTTTTCCGCATGGAGCAGGACGCCCACGGCCGCTACCTGCTCTACAACGGCCAGCGTCCCAGCGACGGCTCCAGCCCAGACCGGCCGGAGAAGCGGGCCACCTCCTACCAGATGCCCCTGGTGCAGTGCTCGGCAAGCAGCCAGCCGTCCGAGTACAGCAGAACGGACGACATCGACAGGCCTCTACTGCACCACAACGACTGCACAGGATGGCACAGAGGCAGCCAGCAACACGTCACAGTGGCTCTCATTGCATTCATCACGTCTCTGCTTCTCAGATGGCAAAGCTAGAGAgcagttttctttgtttttacaaaaagacaaaagtgtGGATTAAAAGAACAGACAGCAAAGTAAACTTTCTACTTGTCTGATGAGAAAAGATGAAAACTGGTGTCCCTGATCCTCTGAACTCCCACCCAGCTCCCAAAGACTCGACACTGCTGCACCACAGAAACTTTAGCACTTTAGAGTGGAACCAAAGACCAACCTGTCTGTGTTTCCACAAGTATACAAAGATGTCTATATAGCCACACAGACCTAAGAGTATGTTTTATACAGTGTATTTACAGTAAGTACCTACACCTATCAAGTCATTTTCAACTGCAGAAAGACTATTTGATGTGTGGAAACTTTTGACCGTACGCTCCCTGTCTCGAGAAGATGTACTTGGGGATAGTCTCCGTTTGCAGTAAAAGGGAACGACACTACTTATATTACAGCAGTTTCTTTACATGTTAAAAATCAATTGCTGACATTAGGAGAAACTCATAAGAGGTCAAACCAGGAGGATATACATCATGTTAGAATAAAGTAAATTCCATGCATTCTAAagagacatttttttattcactAACTGGTCAGAGAACTCAATTTCCTTTGGGGCTATTTTGAAATTATAATCATACTCAGATTGGGAAATTGCACCTGGAAACTTGGCATATAAACTCTGTCTCAATAACTGAATACTTCAGAAACACTGtaaaatttgaaataagactGACTAAATTCAATAGAATTGTTTGTTGTAAATGTATGAAAATCACAATCAAATTAATGCATTGAACGGTGTTCCATTGTTGTGCTTACATGCACAAAATGCCTCACGTGTGTAGTAATTTGTGTGTTCAATTTGTTTGGAATCAAACAGTTTTGCAAAAATTACTACAGTATGATCTCCTCGCAATATGATTCCAATACCTATACTgtaaatgaaaatatttaattgttgcCCAGTCAATTTACAGCTGTAActgtttattttataaaatatgtctGGGTCCTTTTTCGGGGAGAGTTGTAGCTTAACTCTACAATTAAAATGCAGATACTATCATTCATTTTCATAGTTAACTATGTTGGCAGTCCGTGCAAGAATTTACTATATGAAAATACTGTAGGTATTTGTGCTGACAGGAAGTGTAGCTTGGATTGCACCTTCGGACATATCAAACTGCAACTTTGGATTTACTACCAGTTTCAAACTGGAAATAGTAAGATATTTTGTtcctcaatttaaaaaataattactgCATTACCATCTgccctttttatcacttttttcctaAGCATATATAGGCCCTTGTTTTTGTAAACTGTTGATTATCTGTCAAGACCTTACATAAAAATATCTAAACTATTCAAGATCGTGCTTGTAAGTAAAGTTTGTTGTAACAACAAATGTAGAAGACCGAGGTTTTTGGGGTAAATATTCCCTCCACTTTCTAAAACTGTGGTCTAACATAAATAACTGGGCATGTCTGTAATTGTAACAAGAATAGTTTCTGGTTACGAAGCCCTGAATAGTAATTCATGTCTTACCTGTCCAGATTGTGAAGCTCCTTGAAAAGTCTTCCAGTAAGGAATCTTTGAAATGACAGAAAACTAGATTAGTGCTCTTTGCTCCTCAAGGTTGTTTCTAATTTTGTGAGTCAAACAATTTCAGAATACCTTTTAAATAGGATTAAGGTCATCAGGTGTGGCACTGTATCAGCAACCCTTTAGTGGTCCACTGGGATCTcgtttttaatattaatgaagGTCACCGCAATCGTCACCCTCTGGATGGGAGACTAGTACCCGTTTGCTCCTACACCCAATAACTTTCAGATTGTTGAAGGACAAATGCATCACAGCATACTCCATTTCTGGAATAGAAAACTTAAAcagccagtttttttttcagactgaAGAACCTGTGTTAAACTCCAAGAAATGTCTTTTTGTAACTGGATACATGTATAAGATTAAAGGTTTGATACTCTTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU155540 lncRNA downstream 70555 16613028 ~ 16614925 (-) True G115323
TU155522 lncRNA downstream 125007 16558268 ~ 16560473 (-) False G115309
TU155520 lncRNA downstream 127282 16543613 ~ 16558198 (-) True G115309
TU155482 lncRNA downstream 172585 16508577 ~ 16512895 (-) True G115278
TU155431 lncRNA downstream 365510 16317421 ~ 16319970 (-) False mppe1
TU155549 lncRNA upstream 38636 16750900 ~ 16751275 (-) True G115331
XR_005640831.1 lncRNA upstream 111038 16823302 ~ 16824660 (-) True LOC120569046
TU155651 lncRNA upstream 324602 17036866 ~ 17039107 (-) True G115391
TU155697 lncRNA upstream 400452 17112716 ~ 17114744 (-) True G115428
TU155698 lncRNA upstream 407657 17119921 ~ 17121046 (-) True G115429
XM_039815831.1 mRNA downstream 123317 16541130 ~ 16562163 (-) True acss2l
XM_039815832.1 mRNA downstream 123440 16541130 ~ 16562040 (-) False acss2l
XM_039815933.1 mRNA downstream 249239 16430142 ~ 16436241 (-) True napgb
XM_039816418.1 mRNA downstream 349524 16330952 ~ 16335956 (-) False LOC120568735
XM_039816416.1 mRNA downstream 358054 16317418 ~ 16327426 (-) True mppe1
XM_039816723.1 mRNA upstream 39729 16751993 ~ 16754766 (-) True LOC120568957
XM_039814995.1 mRNA upstream 44067 16756331 ~ 16811918 (-) False epb41l3b
XM_039814986.1 mRNA upstream 44067 16756331 ~ 16811701 (-) False epb41l3b
XM_039814994.1 mRNA upstream 44067 16756331 ~ 16802265 (-) False epb41l3b
XM_039814988.1 mRNA upstream 44067 16756331 ~ 16802263 (-) False epb41l3b
TU155525 other downstream 45668 16637108 ~ 16639812 (-) True G115312
TU155443 other downstream 349548 16330953 ~ 16335932 (-) True LOC120568735
XR_005640638.1 other downstream 483782 16182654 ~ 16201698 (-) True cc2d1b
XR_005640639.1 other downstream 484223 16182654 ~ 16201257 (-) False cc2d1b
XR_005640637.1 other downstream 484223 16182654 ~ 16201257 (-) False cc2d1b
XR_005640632.1 other upstream 44067 16756331 ~ 16802264 (-) False epb41l3b
TU155670 other upstream 327536 17039800 ~ 17041476 (-) True ly97.3
TU155671 other upstream 327536 17039800 ~ 17108904 (-) False ly97.3
TU155672 other upstream 330862 17043126 ~ 17045062 (-) True G115406
XR_005640621.1 other upstream 1770892 18483156 ~ 18494488 (-) False sppl2

Expression Profile