RNA id: XM_039816680.1


Basic Information

Item Value
RNA id XM_039816680.1
length 2296
RNA type mRNA
GC content 0.54
exon number 6
gene id LOC120568925
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 31040284 ~ 31155725 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGTCTTCACTTCAGGGTGGGAGAGTCTTCTAGCACTCAGCAGTGGAGCGACAATGGCAGCCGTGGCGGCCGCCTCTCACCCTCCCACGTCCCGTTTTCAGTAATCGACACTGATGCGCCCAGCCGCCATCAGTCCCCGTTCCCTCACAGCTCCGCTGAGAGCTGGCATTTTCACCGGGGTTCCCTGTCATCATTACCGCGCATTTTATAACAACTCACACACTCTGGACTTCATAATAAGCCACCGAGTAGTACTTTAACCCTCCGTTTCTGAATGACGGGCGGTCGGTTCGACTTTGACGATGGTGGCACCTACTGCGGAGGCTGGGAGGATGGCAAAGCCCACGGCCAGGGTGTGTGCACCGGGCCCAAGGGCCAGGGCGAGTACTCGGGCTCGTGGTCCAACGGTTTCGAGGTGGTCGGTGTCTACACCTGGCCCAGCGGGAACGTGTATCAGGGCTACTGGGCGCAAGGGAAACGTCACGGACTCGGCGTAGAAACCAAGGGGAGGTGGATTTACCGGGGAGAGTGGACTCACGGGTTCAAGGGCCGCTATGGAGTCCGTCAGAGCCTTAATACACCGGCCAGGTACGAGGGCACCTGGAGTAACGGACTGCAGGACGGATATGGCGTGGAAACGTATGGTGATGGAGGTACCTACCAGGGTCAGTGGACTGGTGGGATGCGTCATGGCTACGGCGTGCGTCAAAGTGTTCCGTACGGTATGGCCTCTGTCATCCGCTCACCCCTACGCACCTCACTGTCTTCCCTCCGCAGTGAGCAGAGTAATGGTACAGTACTGCGTGACAGCCTGTCTGACAGCCCTGCTGGTACACGCGGTGGCTTTGTACTCAACTTCCACTCAGACGGAGAAGGTTCAGAGAAAAAGAAGGGTCTTTTTCGCCGTGGCTCCCTCTTCGGCAGCCTTCAGCGATTGCGCAAATCAGACTCTCGCTCATCCATTTCCAGTAAGCGCAGCTCAGCACACAGTGACACCACTATGAGCCGCATCAGTTCAAGTGACGCCAACTCCACTATTAGCTTTGGAGACGGAGACCCAGGCGATGACTACTTGCCTCTGGAGGACAATGTGGATGCCACCACCACCGAGTCATACATGGGGGAGTGGAAGAATGACAAGCGCAGTGGCTTTGGTGTCTCAGAGCGCTCCAACGGCATGAAGTACGAAGGTGAGTGGTTGAACAATAAGCGCCATGGCTACGGCTGCACCATCTTTCCTGATGGCACCAAGGAAGAAGGCAAGTACAAGAACAACGCGCTTGCCCGGGGCATCAGGAAGCAGCTGATCCTGCTGAAGAACACCAAGACCAAACAGAAGGTGGATCGAGCCATTGAGGGAGCAGTGAGAGCAGCAGCTATCGCCAGAACCAAAGTAGAGATTGCCATCTCCAGGACGTCCCATGCCCGGGCCAAAGCGGAGGCTGCAGACCAGGCTGCACAGTCAGCCAGTCAGGATTCAGATATTGCTAGAGCTGTGGCAAGAGAGCTCTCCCCGAGCTTCCATCAGCCAGGCCCTGACTACATACGGCAGAAGTATAATGAGCCAGTAGAGGTAAAGGAGGTTCCTGTggaggagaaaaaggagaagTCTTCATCAGGGAGCCCTCATTTCTACCGGAAAGGCACAACACCCAACCAGTCTCCATCTCAGAGCCCAGGTCCCAGCCCCACTCCTTCACCCACTGTTGTTAAAAAGACCTTTTTTAACAGTAAAGTTGATGCTGCCGTCACTCCTGGGAAAGAGAACAAAACCCCAACAGCTGAGTCTTTGACAGCAGGCATATCAAAAACAGCATCAAAACTTTCTCTCAGACAGGAAGTGAGGCAACAGGAGGACCCTCCAGCAGTCAAACCAGATGTTACCATGACAGTCAGCAGTTACCCCAGCAATGGGCAGATTCACTCCCAGTATCACGGTTACTATGTCAAGGCAGATGTCAAGATTCCGCCACCTGAAGAACCAACTGGTGGGGAGGATGACCTTCACCCATTAAGCCTTGCACGCTTGCCGCCACCTGCCAAACAGATTTGGACACCAGCACTAAAATCCCTGCCAACCCCTAGCCCTTCACCAGTCCCATCTAAAGAGGACACCAAAGCACCAGAACCTCCCAAGCCAAAACGGCAGGAATCAACCAAACCAAAGAGCCTAGCAGAAACCAAGAAAGCTAGTGTGGAAATAGCCCCTGAAATTGTAGAGGAGGAATCGATGCCAGACTATGTTTACCAGCCATTGAGCAACTTTGTTGGATTGGGTTAGTAGACTGAGTTTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640806.1 lncRNA downstream 173574 30864907 ~ 30876111 (-) False LOC120568929
TU160451 lncRNA downstream 253901 30794967 ~ 30795784 (-) True G119073
TU160405 lncRNA downstream 601524 30440889 ~ 30448161 (-) True LOC120568429
TU160366 lncRNA downstream 729847 30316096 ~ 30319838 (-) True G119014
TU160363 lncRNA downstream 774338 30274707 ~ 30275347 (-) True G119012
TU160580 lncRNA upstream 21662 31177387 ~ 31197976 (-) True G119171
TU160579 lncRNA upstream 27117 31182842 ~ 31197976 (-) False G119171
TU160589 lncRNA upstream 28862 31184587 ~ 31237816 (-) True G119180
TU160593 lncRNA upstream 29266 31184991 ~ 31244376 (-) True G119184
TU160585 lncRNA upstream 46817 31202542 ~ 31203107 (-) True G119176
XM_039814580.1 mRNA downstream 323605 30717405 ~ 30726080 (-) True LOC120567647
XM_039816281.1 mRNA downstream 524822 30486588 ~ 30524863 (-) False LOC120568640
XM_039816682.1 mRNA upstream 44816 31200541 ~ 31202192 (-) True LOC120568926
XM_039816425.1 mRNA upstream 299874 31455599 ~ 31457157 (-) True LOC120568745
XM_039815925.1 mRNA upstream 313870 31469595 ~ 31575193 (-) False zeb1a
XM_039815926.1 mRNA upstream 313870 31469595 ~ 31573690 (-) True zeb1a
XM_039816310.1 mRNA upstream 526475 31682200 ~ 31692546 (-) True LOC120568656
TU160545 other downstream 173605 30864246 ~ 30876080 (-) True LOC120568929
TU160542 other downstream 184191 30864246 ~ 30865494 (-) False LOC120568929
TU160248 other downstream 1399893 29644363 ~ 29649792 (-) False LOC120567741
TU160179 other downstream 1629033 29420379 ~ 29420652 (-) True G118856
TU160079 other downstream 2063366 28986091 ~ 28986319 (-) True G118764
TU160575 other upstream 14197 31169922 ~ 31171610 (-) True G119169
TU160576 other upstream 14657 31170382 ~ 31171610 (-) False G119169
TU160692 other upstream 334527 31490252 ~ 31575190 (-) False zeb1a
TU160835 other upstream 891752 32047477 ~ 32051439 (-) True G119379
TU160944 other upstream 1060777 32216502 ~ 32226360 (-) False G119465

Expression Profile