RNA id: XM_039816690.1


Basic Information

Item Value
RNA id XM_039816690.1
length 4582
RNA type mRNA
GC content 0.50
exon number 3
gene id LOC120568935
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 15170892 ~ 15194493 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGCACACTACCTACCCACGATGCAGCGCGGTTGCATACAACATAGCCATCTTGTCAAGAGTAACTGAGTGAGGGAGGTAACTGTTGGCGCTGTTTAGATTCTCATTTGTGTTAAAGCGTAAACAATTAAGAGCATTTTCTCTCTCGACCGCCGTTAGCTTCAAAGTAAGTGTCGCCCCCGAATGACTTTAAGCTGGTGCGGTGAGTGGATACAAAGGACTGCTTTCTGGAAGATGTCTCGCATACTTGTTCCGACGTAGGGGGAGTGTGCAGCAGCCAGTTGGCTTGACTTGCTAGCTAGCTCGGTGAGTGGAGGGCTGTGGGCCCTCCTCAGCCTAAAGTAGGTCCTGCAGCTGGGCAACACACTCTGCGACAACGGCCGTTTGGCAACTGCACAACCGCGACATTAGCAGGCCGGTCCGGACTGACAGAAAGCTCCGGATCAATCATCCTACGGGCTGCTGCTGGTATCTAAAGCCGCATTGCTGGACAAGACGACACGAAGTGTGGCGTTGCGTTATGAGCTCATGAAACGCAACAGGAGAtcgagagagaggaagagggatggCGTATATTCATCTTGATTACAGTTAGCTAGGCTAAGTAAAATCTATATGTAATCGTCCTGTTTAGTATGATTTAAGCTTTAAGAAGCCGCAACCAGCTCGTTTCTTTCTGACGGAGGATTAACATAGCCACACGGGACTTGGAATCAGGCTGTCAATATGTCGAAAATGCCGGCCAAGAAAAAGAGCTGTTTTCAGATCACAAGTGTGACTCAGGCCCAGGTGGCGGGTATAGGTGCCGCCGACGACACTGAGAGTCTGGACGACCCAGACGAGTCACGGACTGAAGATGTGTCGTCAGAGATTTACGACATGTCACGGGCTGAGTACGAGCCTGCATGTGACATTAGTTCATCTGAAGAAGCCCTGAATAATGTTGGAGAGCCAGAGGCAATCGGTGTTATGGCGCCATCACACATACCTCAAGCCGGTCAGTTGTCTGCCATGTCAGGCAATATCATGGGGGAGTTTCGGAAGGTGGGAGTGTCGGGCTCAACTCAAGGTGGTCAGCAGCCTCCGGGGCACGGCGCTACAACTGGTGTATCCCTCATCGCTCAGCCTGGGGCAATGCAGCAACAGCCTGCTCCAGCAGCCAGCGCTGGGCCAGCCAGCGGTCCAGTAAACTCATCCCAACCTGCTGCAGTGACCAGTTCAGCTCCTCCTCCTGCCACCTCCACGGTGAGTTGCACTTCACGCTTCAGGGTCATTAAACTCGATCATGGTACTGGAGAACCTTTTCGACGAGGCAGGTGGACGTGTACGGAGTTTTATGAGAAAGACTCTGAGGGCTCTGCTGTTAGTAGAACTGGGGATAGCATTAGGCATGCCAGTGCAACAACACTGGACCCTGCTGCAGACAGAGACAGTGGGCTCGGGCATACAGGAGGATCTGTGGTTGCCCCGGCAACACACTCAGGTCAGGGCTTGGGCTCTGTGGCGGATgcttctctctcttcatcccgCATGCATTTGGTGGAGATGCCACCGCAGCAGCAACAGATCCACCATCCAAACTACAGCGCCACACAGAGTGTTTTCTCCAGCAGCAAGCCAACAGTGGGAGGTCTCCAGCCTTCTGCTCCCCAGAGCGTGCTGCCTCTCGGACAAAACGGCCTGCCTCAATCTGTTGTCCACATACAAAAGTCCCCCATCATGCCTCTTTCAGCTCAGCCCATCGCTTACCCTCCCCTGCAACAGCAGGTTCCTATAGGCCACCAGCTGACCAGCGTGTCTTCTGGATTGCTACAGAACCAGACAGAGTACTATCAGCAGCAACAGCCCACTTCCATGCAGCCAGGGATATCCACTGGCCAGTCCCTTCCAGCGTCCAACCTCTCAGCAGGGCCACAGCCTGTGGGACAAGGACACACTTCGGTCTTGCCTCCAGCCTCTGGAGGGGCTTCTGTGCCAAGTCAGGTTGGAGATGTtgcaggagcaggaggagggtcTGTACCTACCGGACAGCCAGCTCCAGGCCTCTTGCAGCAGCAGACCGGAGGAATGGGAGGTGTCGGAGGCTCCATACTGGTTGGTGGATCTGCTTTGCATCAGCAGGCTGTGAGTCAGTATACAGCCACTGGACAGCCTCAACCCCACGGCCTCCACTCTACATCCTCCGGTGTACAAAATGTGCCTGCCGTCACAGTGAGCACCACTGTGCACACTCCTGTGCCCAGTGCCTCCAGTGCAGCCATGCCAAATGTGACAACCTCCAGTTTGCCTCCAGGTCAGATACCCCACAGCAGGACTCTAGTGGCTTTGGGGGTGCAGGGCCTCCCAGCTACTGGATTTGGACATGCAGAGGGTGGTGTTGGAGGGAAGTCAGAGGGCCTCGTCAATGCACAGTCTCCTGTTGTCTCTGGGAAGGAACCAGTGAAGTCCCTCATGCCTGAGAGCCTGCAGCTCGCCACTCCGACTGTCAACAGCCTGTTTGGAATCCACATACCTGATGACGGGGATGTGGACAGgACCTCGGGAACCAATGTTGCTGCCATTGATAATAAAATTGAACAGGCAATGGACCTAGTGAAAAGCCATCTGATGTATGCGGTGCGTGAAGAGGTGGAGGTCTTAAAGGAGCAGATCAAGGAGCTGTTTGAGAGGAACTCTGTGCTGGAGAGGGAGAACGCCGTGTTGAAATCGCTGGCCAACAGCGAGCAGCTGTCCCAGCTGCCCGCCCAGTCGGCCACCAGCTCCGGCACCACGCCCCCCCAGCAAGGACTCATCCAGCCTCCGCAACAGGCCCAGCCTCCGCTTCAAGTTCAGCCTCAGCCGCAGTCACACGGCCAGCTCCAGCACCACCCCAAACCCCAGCAGCTCCAGACTCAGCTCGATCCTGGCCAACAACAAATGCAACCCAACGTCACCTCCGCTTGAAGTGCATCAGCCATGCTTCGCAtagtgcaggaaaaaaaaagaaaagcatctTCTCTACAACTTATTACAGTTAgtttatgtgaaattaaaacgaagaaaaaaaaccttttgtCTTCTTAGCCACCAGCTTGACCACaaagtacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagaattgaTGTTGgaatgtgagtgtgtatgcATCTGTACTGTGGGCCTTTCCAGTGTTAATGCAATCatcgagagacagagagacttgGACAGAGAAAGTGTGTAGAGACAGAGTATCGGGGAAGGTCGGGGTGTTTGTTTTCATCTTGGCAATGTTCCCGGAGTGGTCGACTGCTGGGTCCAAGCTCATGGACAGGATGTTCTTCTCTTGGACCAGGCCCAAGCCAGACCGGTTGCGACCTGACCTGAAACCTCAAACCGTTGGTGTTGGAAAGGGAGGGCTTCACCCCCACATAAGGGACAAAAGGGCGTGATTGTCAGAACAgagtgattatttttttaaatgagataatTGAGTGGGTAAAGGGGTATTTTTAGCATTGCTGTTTCATGTTGTAAAGTAAGAAGTGAGAGAGTTTTCCGGAGCGCCACACCGCTGCCGTTACTTTTACATCAAATCCAACCCTTGCATCAGTCTTTTGAGTTCTACTgttaagtgttttatttattacaggGCTGCTATTCTCATAAATGAACAATTTCACAAAACCGGTTTAACAGTACCCCCGGTGACTTGTTTCCTCTTCTACAGTGTTTCAACAGATTGGCCATACTTCCCAATGCTTTAATTGTTAAAAGGGTAggtgaaaaagaaaatctgacaaATGTTTAACACTAACTAAAATTTTACGCTGCAATTGCCAATTCATAGCTCAAGTCAAGGTCCAGTATGAATGTACATTTGTGTATAGTATAAAGTATTAAGAGCCTTAATGGGTGACTCTTCGCCTGTTTACATCAAATCTTAACGAGAGCCTGCAGAAGGTATTTGATGAAGATTCAATTCTGTTGGTAGTTATATCTAAAAGTGAATTAGTATTGCCATCAACCCCCCCtccatgtttttttctccaaatgtctttcctgagggggggaggggggggaagcTGTGAAATCATTCAACATACTTTGTAACCAAAGATGCAAAGCTGTGTAAATTGATTTTTAAATGCACACATGTATTtctttcatgtatttttttttcttttgttacttcctccttcacaaaatattttgttgCTGTTCAGCATGTTCTGCATGATCTGTAATCTTCAAACCACTTTCTTACCTCATTTTTATTCAGCACTCTTATTGTAAGATAGTCTGTGAACAGTGTaaatgggggggaggggggatgaTGTGGAGCAGAGAGGAAAAATAATCTAGTGTTACAGACACTAGTCCCAGAAAAATGAAGTGAGCCatgttttgttcatttaaatGGTGTTTGAATTTCATATGCCAATAGTTTTGTTACATTGCaaattttaatgtatttaaataaaagCAATACTCAGATTCCGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154771 lncRNA upstream 102444 15068149 ~ 15068451 (+) True G114747
TU154770 lncRNA upstream 104456 15066123 ~ 15066439 (+) True G114746
TU154769 lncRNA upstream 105502 15065090 ~ 15065393 (+) True G114745
TU154767 lncRNA upstream 145793 15022277 ~ 15025102 (+) False ro60
TU154747 lncRNA upstream 177812 14990988 ~ 14993083 (+) False rgs18
TU154948 lncRNA downstream 172464 15366957 ~ 15368773 (+) False LOC120568540
TU154979 lncRNA downstream 222239 15416732 ~ 15418048 (+) True G114889
TU154994 lncRNA downstream 238178 15432671 ~ 15432944 (+) True G114904
TU154995 lncRNA downstream 241611 15436104 ~ 15437753 (+) True G114905
TU155002 lncRNA downstream 249985 15444478 ~ 15455375 (+) True G114909
XM_039815298.1 mRNA upstream 19466 15148736 ~ 15151429 (+) True LOC120568090
XM_039815291.1 mRNA upstream 32873 15128822 ~ 15138022 (+) True LOC120568088
XM_039815292.1 mRNA upstream 32873 15129145 ~ 15138022 (+) False LOC120568088
XM_039815952.1 mRNA upstream 59465 15097577 ~ 15111430 (+) True LOC120568427
XM_039816693.1 mRNA downstream 4809 15199302 ~ 15205673 (+) False LOC120568936
XM_039816694.1 mRNA downstream 4814 15199307 ~ 15205673 (+) True LOC120568936
XM_039816695.1 mRNA downstream 4814 15199307 ~ 15205673 (+) False LOC120568936
XM_039816498.1 mRNA downstream 38389 15232882 ~ 15266224 (+) True ephb3a
XM_039816194.1 mRNA downstream 108933 15303426 ~ 15310540 (+) True LOC120568590
TU154847 other upstream 13696 15151796 ~ 15157199 (+) True G114789
TU154338 other upstream 874902 14289537 ~ 14295993 (+) False LOC120568245
TU154336 other upstream 875627 14287150 ~ 14295268 (+) False LOC120568245
TU155017 other downstream 278250 15472743 ~ 15478344 (+) False asip2b
TU155036 other downstream 326306 15520799 ~ 15528769 (+) False zgc:153115
XR_005640849.1 other downstream 527646 15722139 ~ 15722248 (+) True LOC120569147
XR_005640848.1 other downstream 528014 15722507 ~ 15722573 (+) True LOC120569146
XR_005640846.1 other downstream 528642 15723135 ~ 15723203 (+) True LOC120569144

Expression Profile