RNA id: XM_039816693.1


Basic Information

Item Value
RNA id XM_039816693.1
length 2244
RNA type mRNA
GC content 0.47
exon number 10
gene id LOC120568936
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 15199302 ~ 15205673 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACACCACCAGCGTGCTGGCTATGCGTGCTGGCTGCTTCTCGTAACTGGACTGCTAAACGAATAGCTACTTTGTCTGCCGTTTCTTTTGGTTAGCTTTAAATTACCTTTGCCAGAACTACTTCAGGTTTTATTCATGGCATGTTGCTCTGTCTTTGGAGAAGGCGACTCTTAGGCTTTGTTGCCCACAGTAATCATAGACCCACTTCAGCATTCTCCTCCCCGAGCAAGTCATTCACCAGTCAAACCATCATGTCAGACAAAAAACGCAAATCAACATCTTCAGCTGCTGCTGGTAAAGAGCCCAGTGCTAAGCAGCAGAAGTTGGCCCACAcgaaggagaagaaggagaatgAGAGAGCTGAGGGCTGGCTGCAGGACCTTGTGAAGcagcagaggacagagaagaagGAAATGAAATTCAACAAAAAGCGCCTCCGCTTTATGTCTGATACTGAGCAGGCAAAGCAGGGCTCAGAGGGTGTACTGTACTGGATGTTAAGAGACCACAGAGTACAAGATAATTGGGCGCTGGTCCAGGCCCAGCGGCTTGCTTTGGAGGAGAACCTTCCTCTGCACATCTGTGTCTGCCTGGTTGTCCCAAAATCAGAACTGTCTACTCTGAGACATTACAGCTTTATGCTAAAAGGTCTGAAAGAAGTTGCAAAGGAATGCAAAACCTTAGGCATCCAGTTCCACTTGCTGCATGGTTCGGCAGGCGACGTTCTCCCTGGCTTTGTGTCTGACTGCGGCCTGGGGGCAGTGGTGACAGACTTCTCCCCCCTCAGAGAGCCACTGCAGTGGTTGGAGGATGTTAAAAAGACTCTTCCAAAGGACATTCCCCTCATACAGGTTGATGCCCACAATATTGTTCCGTGCTGGGTAGCATCACCTAAACTTGAGTACGCCGCCAGGACGATCAGAGGAAAAATCACTAAGCTTTTGCCAGAGTTCCTCACAGAGTTTCCTCTGGTAGAGAAACACCCATACACAGCTACTAGAACAGCCAAACCAGTAGACTGGGACAAAATCCTGGCCTCCCTGCAGGTTGACCGAGCAGTTGGAGAGCCGGAGTGGGCAAAGCCAGGCACCAGTGGAGGGATGGCCATGTTGGAGTCCTTCATTGATGTACGCCTTAAACTGTTTGACACCCAACGCAATGacccaaacgctgctgccctcAGCCAGTTGTCCCCCTGGATCCGCTTTGGCCACCTGTCAGCCCAACGTGTGGCACTGCAGGTTCAGCACAGTGGGAAGTCTGCAGGACATTCTGTCTCCTCCTTCATTGAGGAGCTGGTGGTGCGCAGGGAGCTGACCGACAACTTTTGCTTCTACAACAAGAAATACGACTGCGTGGAGGgtgcgTATGAGTGGGCTCAGAAGACCTTGAAAGATCATGCCAAAGACAAGAGGCCGTATCTCTACACGCGTGAACAGCTGGAGAAAGCAAAGACACATGACAAGCTCTGGAACGCTGCTCAGTACCAGATGGTCACTGAGGGGAAGATGCATGGTTTCTTGAGGATGTACTGGGCCAAAAAGATTCTGGAGTGGACTTCTTCACCTGAGGAGGCGCTCTCAATCGCTCTATACCTAAATGATCGCTATGAGCTGGATGGCCAGGACCCCAATGGCTTTGTTGGTTGTATGTGGTCTATTTGTGGCATCCATGATCAGggctggaaagagagagacgtTTTCGGGAAGATTCGCTACATGAACTACAAAGGCTGCCTGCGGAAGTTTGACGTAGCCCGGTTTGAGAGAAAGTACTGTCCCAAAAACCTTTGAAGCGTAAAATGTTTTGAAGGATGGGAATAAAATGTCTGGCAGCCTATATCCTAGATCTTTACCTCAGGGGGCATTTATAAGCCTTTCTTGCAGAGGATGTTTTGTTCttcactgacttttttttttttttttagttcttttttttaaacattgggCAGATTCTTTTACtgaatattcagacattcataaTTTAACATTAGATTACCACAGTGCCAACTTAATAAGCATAAAAGCTTTTATgctacttttttattactttttttttattttttaaatgtttattaaattgtattttCCACAAAAGATGCCTTGTTTATCATAAATGTTTGAACAACTGATTCCAcaacaccagaggcctgtactacgaagcaagatttggcgttaacgaggtaacttcaggttcaacccagggttttgtgtaccacgacggtggatcacctgttaccgggttc

Function

GO:

id name namespace
GO:0006281 DNA repair biological_process
GO:0003904 deoxyribodipyrimidine photo-lyase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154771 lncRNA upstream 130851 15068149 ~ 15068451 (+) True G114747
TU154770 lncRNA upstream 132863 15066123 ~ 15066439 (+) True G114746
TU154769 lncRNA upstream 133909 15065090 ~ 15065393 (+) True G114745
TU154767 lncRNA upstream 174200 15022277 ~ 15025102 (+) False ro60
TU154747 lncRNA upstream 206219 14990988 ~ 14993083 (+) False rgs18
TU154948 lncRNA downstream 161284 15366957 ~ 15368773 (+) False LOC120568540
TU154979 lncRNA downstream 211059 15416732 ~ 15418048 (+) True G114889
TU154994 lncRNA downstream 226998 15432671 ~ 15432944 (+) True G114904
TU154995 lncRNA downstream 230431 15436104 ~ 15437753 (+) True G114905
TU155002 lncRNA downstream 238805 15444478 ~ 15455375 (+) True G114909
XM_039816690.1 mRNA upstream 4809 15170895 ~ 15194493 (+) True LOC120568935
XM_039816692.1 mRNA upstream 23358 15170892 ~ 15175944 (+) False LOC120568935
XM_039815298.1 mRNA upstream 47873 15148736 ~ 15151429 (+) True LOC120568090
XM_039815291.1 mRNA upstream 61280 15128822 ~ 15138022 (+) True LOC120568088
XM_039815292.1 mRNA upstream 61280 15129145 ~ 15138022 (+) False LOC120568088
XM_039816498.1 mRNA downstream 27209 15232882 ~ 15266224 (+) True ephb3a
XM_039816194.1 mRNA downstream 97753 15303426 ~ 15310540 (+) True LOC120568590
XM_039816111.1 mRNA downstream 132884 15338557 ~ 15368780 (+) False LOC120568540
XM_039816109.1 mRNA downstream 133317 15338990 ~ 15368780 (+) True LOC120568540
XM_039816110.1 mRNA downstream 133317 15338990 ~ 15368780 (+) False LOC120568540
TU154847 other upstream 42103 15151796 ~ 15157199 (+) True G114789
TU154338 other upstream 903309 14289537 ~ 14295993 (+) False LOC120568245
TU154336 other upstream 904034 14287150 ~ 14295268 (+) False LOC120568245
TU155017 other downstream 267070 15472743 ~ 15478344 (+) False asip2b
TU155036 other downstream 315126 15520799 ~ 15528769 (+) False zgc:153115
XR_005640849.1 other downstream 516466 15722139 ~ 15722248 (+) True LOC120569147
XR_005640848.1 other downstream 516834 15722507 ~ 15722573 (+) True LOC120569146
XR_005640846.1 other downstream 517462 15723135 ~ 15723203 (+) True LOC120569144

Expression Profile