RNA id: XM_039816700.1


Basic Information

Item Value
RNA id XM_039816700.1
length 2484
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC120568942
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 23134256 ~ 23147417 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCAGGAAGAGTGAGGGTGTtgtaaatgcagaaaaaaaaaaatctttattttattttataaaaacataaactcAACAACGACTAAGGCACTGCTGCTGTGATCTCTTCCTTTGCTGGGAGTTTTATTCTGCAGATTGGTTTAGACTGGGGCAGAGACATGAGCTAATTGTATCCTGATCTTTGCCTTGAGGGGTTTCGGAGCCCTGGAGCAAGTATTCTCTGTATTTTGTTCTGTCTACCTTAGCCAAGCTATTGCATTTCTCACTGGTGTAGGAAGAGAAGCAGATCGTGGGCCAAATCGGAGGGAAAAGGTGCATAAATAGATACTTTATGCCGCTCTATGTTTCAGGTTCGTTGGGGAAAAGCCGACCTCGTCCTATCTGTTAACCTCAACGTCTGCGCTGTAATGGACGAAACGGACATCATGGACTTAACGCATCAGAAAGCGAGAAAGCGACCGCGTCCAATCAGTTCTGTGGATGAGTCCGTGCACGCTTCCCTCAAACGGCTCCCGATGCGAGCGGCGGAGTGCAGGGAGCCCTCACTGATGTTCTCAGTCAGAGGAGAGCCGGTCCCCGCAGCATCTCTCAAGCAAAATGACCATTCGGTGACTTCCTCTCCAAACACAGTGATGCCGGCGCAGgATCATCGCTCCAGCATGTCCAGGCCCATGATCACACGGTCACCGGTGTCTCCCTTGAGCAACCAGGGCATCCCAGCACCTGCACAGCTCACCAAGTCCAACGCCCCTGTGCACATTGATGTGGGCGGACACATGTACACCAGCAGTCTGGCCACCTTAACAAAATTCCCAGAATCCCGAATTGGTCGTCTCTTTGATGGCACAGAGCCTATAGTCCTGGACAGCCTGAAGCAGCACTACTTCATTGACAGGGATGGACACATGTTCCGCTACATCCTCAACTTCCTCAGGACGTCCAAGCTTCTCATCCCAGAAGACTTCAAAGACTACAGTCTGCTGTACGAGGAGGCGCGGTACTTCCAGCTGCAGCCAATGCTTGCTGAGCTGGAGCGCTGGCGTCAGGACCAGGAGCTAGGCCGGGTGTCGCGCCCCTGCGAGTGCTTGGTGGTGCGCGTTGCACCTGACTTGGGCGAGAGGATCGCGCTCAGCGGTGACAAGGCCCTGATTGAAGACGTGTTTCCGGAAATCGGTGACGTCATGTGCAACTCTGTCAATGCCGGCTGGAACCATGACTCCACGCACGTCATCCGCTTCCCACTTAATGGATACTGCCACCTCAACTCTGTCCAGGTTCTAGAGCGCCTGCAACAACGTGGCTTCGAGATCGCCGGCTCCTGTGGTGGAGGCGTGGACTCATCCCAATTCAGCGAGTACGTCCTGAGGAGGGAACTGAGGAGGACGAGTCAGCGAGGATCCAATTCAAACAGGATAAAGCAGGAGCAGCTGGACTAGAAACCTCCCGAGCTGTAGGAGGTGCTAGACTTTTCTGTGGCGTCCAAACGCTCAATGCTGCAGAGCTCTGTGGACTCTGTTTTTCTCCGTTTTCCttgttaatgtttttgttttcttaaacTTGAGAACCATCTAGAGAATAAATATGAGGTGCAACAGGAGATTTTTTTGCCATAAGAAGATACAAGACATTTGAGATTGCACAGACATTTGTGAATGTCTAGCCCCCATAAACCAATTTAAAAAGGATTTATATACGCTGGATCCCCAAACAAAGTTTGTTTTAAAACTTGGAGCCTACATTAGGTTGACTATGATTTCTATTATACCCATATAAATTTAAAGGAAGGCTTTTATTGCTTACGTAGTATGTTGCATAGCTTGTCACCAATGACTTGATTTTGATGTCTCACTGGCAAATTGGCAAAGTCTGTTTTTATCCCTCGCTGTAAAAAGGTCACTAATGTGTTGCTTACAGTACAGAATGTCTCAGTTGTCATAAACCGTTAGTTTCAACAAAGCATCTTTTTTCACAACTAACATGATGTTGAATATTATGATACcaatgaagtgtttttttttactttaatgaaagttattttattggattatgCCATGAAATATAGTTGACATTAGTATCATCAAAATAAGACCCATCCATACgcagtacagaaaataattCAGTAAACTATTATGTCACAACATTTGCCTCTTTGCGTAGTATGAACTACTAACCCCCATGTGCTAACTTGGGAATTATTTAATTGGATCATAATATTCCCCTGAGTCATGACCTGTAAATTCCTTTcattgtatatgtgtttgtgttttttacatTGAATCTTTTTAAAGCGATTTGTTGCCTCTAACATGACTGAACAGATTAAAGCTTAACGTACAACCGACTCCAAGATCACTTTTACTTGTAGCACATATTGATATGAAGTTGGATATATAGTATTTCTAAGATGACTGACCCACCTACGCTCCCTAGATTTGAGTAaagaggaatgtagcacaaaatgtgaaataaatctCAACTTAAGTTGT

Function

GO:

id name namespace
GO:0051260 protein homooligomerization biological_process

KEGG:

id description
K21754 KCTD1_15; BTB/POZ domain-containing protein KCTD1/15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157860 lncRNA upstream 216150 22917876 ~ 22918106 (+) True G117128
TU157795 lncRNA upstream 379766 22752252 ~ 22754490 (+) True G117082
TU157787 lncRNA upstream 386524 22747120 ~ 22747732 (+) True G117077
TU157668 lncRNA upstream 661416 22465335 ~ 22472840 (+) True G116978
XR_005640771.1 lncRNA upstream 819309 22307767 ~ 22314947 (+) True LOC120568744
TU157944 lncRNA downstream 226293 23373710 ~ 23374199 (+) True G117187
TU157950 lncRNA downstream 229716 23377133 ~ 23378516 (+) True G117190
TU157982 lncRNA downstream 292154 23439571 ~ 23440835 (+) False kdsr
TU157984 lncRNA downstream 298934 23446351 ~ 23462300 (+) True G117219
TU157987 lncRNA downstream 321203 23468620 ~ 23514085 (+) True G117220
XM_039816970.1 mRNA upstream 5304 23122523 ~ 23128952 (+) False aqp4
XM_039816969.1 mRNA upstream 5304 23122656 ~ 23128952 (+) True aqp4
XM_039815631.1 mRNA upstream 107509 22964585 ~ 23026747 (+) True cdh2
XM_039814979.1 mRNA upstream 267755 22827876 ~ 22866501 (+) False dsc2l
XM_039815740.1 mRNA downstream 30324 23177741 ~ 23189571 (+) True ss18
XM_039815741.1 mRNA downstream 30324 23177741 ~ 23188138 (+) False ss18
XM_039815742.1 mRNA downstream 30326 23177743 ~ 23189571 (+) False ss18
XM_039815864.1 mRNA downstream 65081 23212498 ~ 23302789 (+) False LOC120568373
XM_039815865.1 mRNA downstream 65081 23212498 ~ 23302789 (+) False LOC120568373
XR_005640697.1 other upstream 455525 22641510 ~ 22678731 (+) False LOC120568311
TU157733 other upstream 521847 22608064 ~ 22612409 (+) False LOC120567968
XR_005640709.1 other upstream 1236865 21870953 ~ 21897391 (+) False LOC120568354
TU157037 other upstream 2218968 20882706 ~ 20915288 (+) False LOC120568904
XR_005640618.1 other upstream 2758623 20373235 ~ 20375633 (+) True LOC120567833
TU158062 other downstream 529662 23677079 ~ 23685804 (+) True LOC120567964
TU158130 other downstream 703462 23850879 ~ 23855157 (+) True G117319
unassigned_transcript_561 other downstream 720837 23868254 ~ 23868325 (+) True trnaw-cca_13
TU158168 other downstream 758453 23905870 ~ 23908401 (+) True G117353
TU158169 other downstream 765247 23912664 ~ 23914498 (+) True hes6

Expression Profile