RNA id: XM_039816709.1


Basic Information

Item Value
RNA id XM_039816709.1
length 3985
RNA type mRNA
GC content 0.61
exon number 3
gene id vcpip1
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 3936631 ~ 3949566 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCAGTTGCTAAAGGAAAAAACAGCCGCTTCCGTGTTGTTCTTGTATTATTGTGGCAAATAACTATCGCTAGCAGAGTCGAAGCTAACAGACAGCCTCGCCGGAGGGTAACTATCATGATTTAGTGAAGCTGACGCACAGTTTTTAAGCCTTTCCCGCCCGACATGTCGCTGCTACAGAGCtcaaagaaaaaagacaagCGTATTTTGTCCGGTACCTGCCCGGACCCGAAATGTCAGGCGAGGCTATTCTTCCCCGCTTACGGCTCCGTTAGCATCGAGTGCACCGAGTGTGGTCAACGCCACGAACAGAAGAACCTGTTAAATGTCGAAGAAGTCACGGATCCCGATGTTGTGCTCCACAATCTGCTCAGAAACGCCCTGCTCGGCGTCACCGGGGCCCCGAAGAAAGGCACGGAGCTGGTGAAAGTAATGGGGCTTTCTAATTACCACTGCAAGCTGCTGTCGCCGGTGCTCACCAGGTACGGCATGGATAAACAAACCGGCAAAGCCAAGCTGCTGAGGGACATGAACCAAGGTGAGATGTTTGACTGCTCTCTCCTGGGAGACAGAGCTTTTCTCATCGAGCCGGACCATGTTTCCACAATGGGCTACGGCAAAGACCGGTCAGGGAGCCTCATATACCTCCATGACACCCTGGAGGAGGTGAAGAAAGCCAACAGCAGCAGGGAATGTCTCATCCCCGTCCATGTAGACGGAGACGGGCACTGCCTGGTCCACGCCGTGTCCCGAGCGCTGGTGGGCAGGGAACTGTTCTGGCACGCCCTGAGGGAAAACCTGAAACAGAACTTCAAGCAGAACCTGGACCGCTACAAGGCTCTCTTTCAGGATTTTATCGACGCCGCAGAGTGGGAGGACATCATAAACGAGTGCGATCCGCTTTTCATCCCGCCTGAAGGCGTGCCGCTCGGACTTCGCAACATCCATATATTTGGTTTAGCCAACGTCCTGCACCGGCCCATAATCCTGCTGGACTCCCTGAGCGGGATGAGGAGCTCTGGGGATTATTCGGCCACCTTCCTGCCCGGGCTAGTAGCGGAGGAGCAGTGCAGCGGGAAAGACGGGAAGCTCAACAAACCGATCTGCATCGCGTGGAGCAGCTCCGGCAGGAACCACTACATCCCCTTGGTGGGAATCAAGAACACGGTGCTGCCCAAACTGCCGGCTCGCCTGCTGCCGAAAGCCTGGGGCGTCCCGCAGGAGCTCATCAGGAAGTACATCAAGCTGGAGCAAGACGGCAGCTGCGTGATCGGAGGCGACCGCAGCCTCCAGGATAAGTACCTGATGCGGCTGGTCAACGCCATGGAGGAGGTGTTCATGGAGAAGCACAGCATCCATCCCGCGCTGGTGGCGGACGTGCACCAGTACGTGTATAGGCGCACCGGCGTGATCGGCATCCAGCCCGAGGAGGTGACCGAGGCAGCTAAGAAGTCGGTGATGGAGAACCGGCTGCACCGCTGCCTGATATGCGGCGCTCTCTCCGAGCTGCACGTCCTGCCGGAGTGGCTGGCTCCTGGCGGGAAGCTCTACAACTTGGCCAAGTCCACTCACGGCCAGCTGCGGCCGGATAAGAACTACAGCTTCCCGCTGAACAACGTGGTGTGCTCCTACGACCCCCAGAGAGACGTGCTCGTCCCGGATTATAAACTGAGCTCCCTCAACACCTGCAACTGGTGTCACGGCACGTCGGTGCGCCACATCCGCGGCGACGGCTCCGTGGTTTATCTGGACGGAGACAGGACCAACACGCGCTCCCACGGCGGGAAATGCGGATGCGGCTTCAAACATTTCTGGGAGGAGAAGGAGTACGACAACCTCCCCGAGGCGTTCCCGATCACGCTGGAGTGGGGCGGCCGCGTGGTGAGAGAGACGGTGTACTGGTTCCAGTACGAGACCGAGCCGTCGCTGAACAGCAACGTGTACGACGTGGCCATGAAGCTCGTCACCAAGCACTTCCCGGGAGAGTTTGGCAGCGAGATCCTGGTGCAGAAAGTAGTCAACACCATCCTGCACCACACCGCCAAAAAGAACCCGGACGAGTACAACCCGGTGTCCATCGACGGGGCTCACGTGCCGCGTCTCACCGACGCCGCGGAGACTCCGACGCAGGCGGCGCCAGACCCGCAGCCGCCCACTAAGATCATCCTCACGGGTCAGAAAGGGAAGACGCTGCACAAGGAGGAGCTGACGATGAGCCGGGCGGAGCGCAGCATCCAGCAGAGCATCAGCGAGCAGGCCTTCGTCACGCAGAAGCGCCTCACGGACAAGCTGAAGCAGGAGCAGAAGGGCCACGCCCGCACGTCTTCCCCCGGAGGCTCACCGGAgacttcttcttcctcttcggCTCCGGCCACGCCGACTAAGTCCTCCCCGTTGTCGTCGTCCAATAAGGAGAAGAAGATCCGCGTGACGACCAGCGACGGCAGGCAGGCGATGCTGACCCTGCAGGCTCACACCACCTTCTCGGAGCTGCAGCGGAGCATCGCCAACCACTTCGGCGTGCCGCCGGCGCAGCAGTTCATCCGCTACGGCTTCCCGCCCAAAGAGCTGGTCCCCGCGAGGGACGGCGAGGAGAACGAGCCCGTGGCGCTGCAGCACGGCGACAGGGTGACGGTGGAGATACTGAGAGGCGGCAGCGGCGAGGAGAAAAACCCCGTGGCGTCCATACCGCGCGCCTCCAGCTCCCACTCCGGCCTGCACCACGCGGTGAAGAGCGAGGACGCCGTGACGACGAGCGGCAGGATGAGCAGCCGCGAACTCCAGGACAGCATCGACCTCGAGatgtcctccctctgtctcctaGCAACCTTGATGGGCGAGGACGTTTGGTCGTACGCAAAGAAGCTGCCGCACTTATTCCAGCAGGGCGGAGTCTTCTACAACATCGTCAAGAAGGACATGGGCCTGATGGACGGGAAGCACTGCACGCTGCCTCACCTGACGGGGAAAACCTTTGTCTACAACGCCGCCGAGGAGCGCCTGGAGCTGTGCGTGGACGCCGCGGGCCACTTCCCAGTCGGCCCCGATGTGGAGGATCTTGTGAAGGAGGCGGTGGCCCAGCTGCGCCCAGACGGCGCCGGCCGCGGCAGCCGAGAGGGCAGCCCGTCTCACGGCGGGCTGCGGCTCGGCAGCGGCGGCGTCGTGAGGAAGAAGGAGCAGCTGCAGAGCGTCACGGCCTTCCAGGGTAAAGGCCACTCGCTGGGCAGCGCCGGGAACTCCTCCCCTCCTGAGCACCGGCCTATCACGCGCCAACACAGCAGCGGCGTGGACCTGAGCGCCAGCGTGTCCCGGGGCCCACCGGACCTGTCGGACATCCCCGAGGACGCCACGCGGGAGCTGGTTCGCATGGCGCCGGGCTTCGTCACCATGAAGGACGGGCGCGGGCCGGACCCCGGCCTGATGGAGCAGCAGCGGAGGAAGCTACAGGAGATGGTGTCCTCCATCCAGGCCTCCATGGAGCGCCACCTCCGAGAGCAGCAGAGCGCCGGCGCCGGCCAGGAGCGGACAGACGGGACTAAGGCGGGCCAGCCGACGCCTAAGGTCGACCGCGAACCTGCGGCGGGCGCGGCCGGCAAACCGGACGGGAAGGCGGAGCAAACGGAGGAGATGGAGAGTCAGGACGGCGAGCAAAACAACGCCATGGAACCCATGGATCACTCCTGATCACTCCTGAccagggttgggcatcgtttagattttaatgattctgattccacttccgattcttcctttcgattccggttcttcgAGCGGTGGAgctgaaacgggtcacatgcttatttcacaaataagaggaacgttttattttgattcaaaggtggggttgcagtttgacgggggGCTTTTTTCAACGTATAATAAAGCCActctagagcgccgcttactgagCTCcgcggctgcaacacaacaagcgcccggtcgctacggaaacccaaaacttgcgcatgttaaatttagAACCcgttg

Function

GO: NA

KEGG:

id description
K11861 VCPIP1, VCIP135; deubiquitinating protein VCIP135

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150565 lncRNA upstream 84597 3850107 ~ 3852034 (+) False LOC120568521
TU150579 lncRNA upstream 85756 3850107 ~ 3850875 (+) False LOC120568521
TU150643 lncRNA upstream 94672 3791992 ~ 3841959 (+) True G111789
TU150638 lncRNA upstream 106772 3743977 ~ 3829859 (+) True G111785
TU150647 lncRNA upstream 135933 3799802 ~ 3800698 (+) True G111792
TU150674 lncRNA downstream 1378 3950944 ~ 3957274 (+) True G111819
TU150676 lncRNA downstream 4462 3954028 ~ 4018396 (+) True G111821
TU150690 lncRNA downstream 52448 4002014 ~ 4005335 (+) False G111832
TU150691 lncRNA downstream 52448 4002014 ~ 4003733 (+) True G111832
TU150692 lncRNA downstream 57850 4007416 ~ 4010693 (+) False G111832
XM_039815756.1 mRNA upstream 111197 3815820 ~ 3825434 (+) True LOC120568332
XM_039816100.1 mRNA upstream 128941 3803898 ~ 3807690 (+) True LOC120568529
XM_039815753.1 mRNA upstream 220676 3715566 ~ 3715955 (+) True LOC120568326
XM_039816096.1 mRNA upstream 336059 3596415 ~ 3600572 (+) True LOC120568524
XM_039816094.1 mRNA upstream 384614 3540987 ~ 3552017 (+) True LOC120568521
XM_039816475.1 mRNA downstream 10026 3959592 ~ 3964053 (+) True dusp28
XM_039816474.1 mRNA downstream 10027 3959593 ~ 3964053 (+) False dusp28
XM_039816102.1 mRNA downstream 36879 3986445 ~ 3992589 (+) True LOC120568531
XM_039816103.1 mRNA downstream 46051 3995617 ~ 3997859 (+) True LOC120568532
XM_039816306.1 mRNA downstream 101754 4051320 ~ 4065021 (+) True crfb16
TU150599 other upstream 411582 3500679 ~ 3525049 (+) False LOC120568327
TU150598 other upstream 411582 3511653 ~ 3525049 (+) True LOC120568327
TU150236 other upstream 537448 3388094 ~ 3399183 (+) False LOC120567769
TU150165 other upstream 860730 3016958 ~ 3075901 (+) True G111494
TU150715 other downstream 139078 4088644 ~ 4137543 (+) True G111848
TU150718 other downstream 140942 4090508 ~ 4138933 (+) True G111850
TU150765 other downstream 315936 4265502 ~ 4326186 (+) True tmeff1a
TU150809 other downstream 549428 4498994 ~ 4539205 (+) False dnaaf11
TU150808 other downstream 578349 4527915 ~ 4529749 (+) False dnaaf11

Expression Profile