RNA id: XM_039816728.1


Basic Information

Item Value
RNA id XM_039816728.1
length 2608
RNA type mRNA
GC content 0.52
exon number 15
gene id acsl3b
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 25931541 ~ 25944450 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACGTCATTCAGTAGCTTCCGGGCTGGCAGCACTGGCCCGGTGATGTTGAGATTTACAATTTGACCACATTTTATATACCTTTTGTAACAGACTAGCAGTCGTAATTTATAACCAAATACATCCTGTTAAtagattaaataaatataatgtcAGAGCTTTGGTTACAAGGATAAAGAGACTTAATCCAACCCCCCCCCAGCGACTCAGGCGTAGCGGTTGAGAAAAGAGGTCTGGTTGCCTTGCTGCAAGAACCACAGCAGTTCATCATTGCTTGTCTGGTGTGATTCATCTCCAGCCCTGACTTCATCCTCAAAGATGAAGTTGAAGGAGGATATGaaccccctgctgctgcaggtcttCCACTCGGTGGTCTGGGTCTACTCTGTCATCACCTTCATACCCTGGTACTTCTTTTCCGGAGCTGGCACCAACTTGGAACGGGCTCGCCGGATCAAGGCACGCTCAGTTAGTGGACACCCAGCAGGGCCTTACCGGGCCATCAACAGCCAAGACAAGCTGGTAGCCTGGCTGCACCCTAGGGTGGACACCCTGGACAAAATGTTTGAATACGCTGTGAGTCGGTTTCCGCAGAGAGACTGTCTGGGCACCAGGGAGGTGCTCAATGAGGAGGATGAGCCCCAGCCTAACGGCAAGGTCTTTAAGAAGGTAATTCTAGGGAACTATAACTGGCTGTCGTACGAGGAAACCTACAAGGCAGCGAGGTGTTTTGGCAGCGGTCTGGCAGCACTCGGCCAGAGACCTCAGTGTAATATCGCCATCTTCTGTGAGACCAGAGCAGAGTGGATCGTGGCAGCACAAGCCTGCTTTATGTACAATTTCCCACTTGTGACCCTGTACGTCACTCTTGGACCCACGGCCATCGCGCACGGCCTGAACGAGACCGGCATCACGCACATCATCACAAGCAAAGAACTGCTACAGAGCCGTCTCAAGGCCATACTGTGTGATGTGCCGAGGCTGCAGTACATCATCGTAGTAGACCCTAAACCCACAAGCTGGCCAGACATCCCCAGAGGCATCATGGTCTACAACATGGACGCTGTGAAGGAGATGGGATCCAAGCCTGACAATTTAGCAGTAGACCGCAGACAGCCAGAGCCCTCGGACATCGCGGTCATCATGTACACCAGCGGCTCCACTGGCATCCCCAAGGGTGTCATGATCTCCCATGGCAACATCATTGCTGGCATCACTGGCATGGCTGAGCGAATCCCTAACCTCAATGAAACCGACACCTATATTGGCTACCTGCCATTGGCCCACGTTTTGGAGCTCAGCGCCGAAATGGTGTGCATCTCTCACGGCTGTCGCATCGGCTACTCCTCCCCTCAGACTCTAGCCGACCAGTCCACAAAGATAAAGAAGGGCAGTAAAGGGGATACCAGTGTGCTGAAACCTACTCTCATGGCTGCTGTACCAGAGATCATGGACCGAATCTACAAGAATGTGATGACCAAAGTGGAGAAAATGAGCAAACTCCAAAAGACGCTGTTTGTGCTGGCTTACAACTACAAGATGGAGCAGATCTCCAAAGGCTACAGCACGCCTCTCTGTGACAGGCTGGTGTTCAAACGAGTGCGTGCGCTCTTGGGAGGAAACATACGGGTGCTGCTGTCTGGCGGAGCTCCGCTCTCCGCTGCCACACAGCGCTTCATGAACATCTGCCTGTGCTGCCCTGTGGGCCAGGGCTACGGCCTGACAGAGACCTGTGGAGCTGGCACCATCAGTGAGAtgtgGGACTACAGCACAGGACGCGTTGGCGCTCCATTGGTTTGTTCAGAGATCACGCTGAAAGACTGGGAGGAGGGTTGTTACTACAGCACGGACAAGCCCAACCCACGGGGGGAGATTTTGATTGGCGGCCCCAACGTAACGATGGGTTACTACAAAAATGAAGCCAGGAACCGCGAGGACTTTTTTGTGGATGAGCACGGCCAGAGATGGTTCTGTACAGGAGACATCGGAGAGGTCCACACTGACGGATGCCTTAAGATCATCGACCGTAAAAAGGACCTGGTGAAATTGCAGGCAGGCGAGTACGTCTCTCTAGGAAAAGTGGAGGCCGTTTTGAAGAACTGCCCACTCGTAGACAACATCTGTGCCTATGCTAACAGTGACCAGTCGTACGTGATCAGCTTTGTGGTGCCTAACCACAAGCATCTAACGGTGCTGGCGGAGCAGTTGCATGTGAGTGGCACATGGGAGGAAATGTGCAACAACTCGCAGATTGAGAAAGAGGCCCTCCGCATCATTACTGAAGCTGCTCTCTCAgCGAAAATGGAGCGATTTGAGATCCCCAAGAAGATCCGTCTGAGCGCCGAGCCCTGGACACCAGAGACCGGGTTGGTCACTGACGCATTCAAACTGAAACGCAAGGAGCTCAAAACACACTACCAGGAAGACATTGAGAGAATGTATGGAGGAAaataacacatacaaacacactccaaacaacaaatacacataGATATacttgcacacatacacagggagCTCAGAAGCCACTACCGGGGAACACTTGGGAGAGGAGTTTTACTTAGATACaggtacaaacaaacaaacacacacacacacacacacacacaca

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K01897 ACSL, fadD; long-chain acyl-CoA synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158843 lncRNA upstream 14819 25916500 ~ 25916722 (+) True G117847
TU158842 lncRNA upstream 25225 25906115 ~ 25906316 (+) True G117846
TU158841 lncRNA upstream 26410 25904913 ~ 25905131 (+) True G117845
TU158831 lncRNA upstream 42700 25880504 ~ 25888841 (+) True LOC120568898
XR_005640801.1 lncRNA upstream 42709 25880587 ~ 25888832 (+) False LOC120568898
TU158861 lncRNA downstream 105685 26050135 ~ 26050878 (+) False LOC120567655
TU158959 lncRNA downstream 113804 26058254 ~ 26065839 (+) True G117917
TU158981 lncRNA downstream 260161 26204611 ~ 26204830 (+) True G117933
TU158986 lncRNA downstream 263906 26208356 ~ 26208871 (+) True G117938
TU158990 lncRNA downstream 362239 26306689 ~ 26307634 (+) False ece2a
XM_039816643.1 mRNA upstream 120261 25808021 ~ 25811280 (+) True LOC120568896
XM_039816642.1 mRNA upstream 153864 25773777 ~ 25777677 (+) True LOC120568895
XM_039816641.1 mRNA upstream 158073 25743327 ~ 25773468 (+) True LOC120568894
XM_039815789.1 mRNA upstream 373909 25376185 ~ 25557632 (+) False LOC120568352
XM_039816730.1 mRNA downstream 15356 25959806 ~ 25963171 (+) True scg2b
XM_039816731.1 mRNA downstream 24160 25968610 ~ 25972306 (+) True LOC120568964
XM_039816732.1 mRNA downstream 24160 25968610 ~ 25972306 (+) False LOC120568964
XM_039816734.1 mRNA downstream 24455 25968905 ~ 25972306 (+) False LOC120568964
XM_039814591.1 mRNA downstream 55772 26000222 ~ 26046169 (+) False LOC120567653
TU158825 other upstream 100846 25830055 ~ 25830695 (+) True G117829
TU158814 other upstream 137587 25775891 ~ 25793954 (+) False LOC120568895
TU158802 other upstream 175651 25755093 ~ 25755890 (+) False LOC120568894
TU158583 other upstream 977294 24950568 ~ 24954247 (+) True G117664
TU158470 other upstream 1255788 24667893 ~ 24675753 (+) False LOC120569045
TU158989 other downstream 271277 26215727 ~ 26217041 (+) True LOC120568800
TU159070 other downstream 450976 26395426 ~ 26402078 (+) True G118011
TU159071 other downstream 454970 26399420 ~ 26402078 (+) False G118011
TU159113 other downstream 472058 26416508 ~ 26418008 (+) True ccl20a.3
TU159178 other downstream 646380 26590830 ~ 26600072 (+) True prkab2

Expression Profile